Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC46                  <------ZmHOX2a(2)              <------NtERF2             --------->LBD16--------->ARR11(3)            <---------ANAC46<---------ARR11(3)            <---------DEAR3(1)           <---------LBD16------->TEIL            <---------AHL20(2)           <---------At4g35610                 <---------ARR11(3)       <---------ZAT2         <---------DEAR3(1)<---------CCA1(2) <---------YAB1             --------->At4g35610     <---------MYB46(3)--------->ANAC58      --------->ICU4             --------->ZAT2     --------->ABI4(2) --------->ANAC58    --------->YAB1               <---------At4g35610 ------->GLK1(2)--------->GLK1(1)       <----------DOF2               --------->ZAT18 ------->ARR14(2)<---------ARR11(3)   --------->At4g35610     --------->STY1(2) --------ARR14(2)--------->ARR11(3)   <---------At4g35610     <---------STY1(2)              -------- -------GLK1(2) <---------GLK1(1)  <---------At4g35610   --------->CCA1(2)----------->HVH21 ---------   gaatcggtgcttcggcggagatcatacgcacatcttcatcagctttcatgatttttttgatacgagctagagggagctgatggtttttgaaatcgtttac  25434100                                                                                         ----------->HVH21                                                                <---------DEAR3(1)       --------->WRKY38(1)                                                                --------->ALFIN1        <---------MYB52(1)                                                      <---------ANAC58                 <---------At4g35610                                                      <---------ANAC58                 --------->At4g35610                                                      <---------ANAC46                 --------->LBD16                                                 <-----------RAV1(1)    <-----------RAV1(1) <--------                                                 <---------MYB46(3)<---------AtMYB61 <---------LBD16                                        <---------MYB46(3)      <---------AtMYB61   ------>ZmHOX2a(1)                                        <-----------RAV1(1)  <---------AtMYB61   ====================      ------>ZmHOX2a(2)  --------->HSFB2a(2)   <-------GAMYB --------->ALFIN1    ------>ZmHOX2a(1) ->WRKY12                <---------HSFB2a(2)  <-----------RAV1(1)<---------MYB46(3) ================= >DOF5.7(2)       <---------MYB52(1)  <---------At4g35610   <------ZmHOX2a(1)   <---------ALFIN1   ctgttcgatctcttgtctctggtatgtccagaacatttgaagctgttgctgttgttgctggaggaggtggtggtatgtcgctcctcctccggtgactatt  25434200                                                <---------ZAT2                                                --------->ZAT2                                                --------->O2                                                <---------O2                                            ------>NtERF2                                           --------->ARR14(2)                                          --------->RAP2.3(1)                <---------ANAC46                                          --------->ATERF1(1)                <---------ANAC58                                         <---------ATERF1(1)                 <---------ANAC58                                         <---------RAP2.3(1)               --------->MYB111(2)                                        <---------DEAR3(1)                 <---------MYB46(3)                                        --------->ALFIN1                 <-------GAMYB                                       <---------LBD16                  --------->MYB55(2)                                       --------->ATERF1(1)              <---------MYB46(3)                                       <------NtERF2                   <---------AtMYB61                                      <---------ERF1                --------->ALFIN1                                      <---------RAP2.3(1)           <---------AtMYB61                                      ------>NtERF2               <---------MYB46(3)                                      <---------RRTF1(1)          <------MYB46(1)                                     --------->ATERF1(2)         <---------DEAR3(1)                                     <---------ANAC46            --------->ALFIN1                                     <---------ATERF1(2)         --------->MYB55(2)              --------->ALFIN1       <---------RAP2.3(2)         --------->MYB111(2)           <---------AtMYB61         <---------RAP2.6(2)         --------->MYB111(1)       <---------HSFB2a(2)           <---------RRTF1(3)          --------->MYB46(2)     =====================HOX2a_HOX2a<---------bZIP60(1)         <---------MYB46(3)     <------ZmHOX2a(2)               <---------DEAR3(1)         <---------MYB55(1) <-------GAMYB    <---------ARR14(2)               <---------RRTF1(2)         <--------P<--------P    --------->ARR14(2)               <---------RAP2.3(3)       <-------GAMYB<---------At4g35610    --------->ARR11(3)            ----------->HVH21           <---------MYB46(3)  <---------MYB46(3)    --------->AGP1 <------ZmHOX2a(1) <---------O2             ------------>AtMYB84--------->MYB55(2)   --------->At4g35610            ----------->TGA1 <---------MYB46(3)<---------MYB46(3)   <---------At4g35610          <---------MYB46(3)--------->ALFIN1<------MYB83   <--------P -YAB1 <-----------RAV1(2)    <-------GAMYB<---------ARR14(2) --------->MYB55(2)<-------GAMYB   <---- ===========HOX2a_HOX2a     <---------YAB1<------NtERF2      <---------TOE2(2) <---------MYB46(3) ===========HOX2a_HOX2a     <---------TOE2(3) <-----------RAV1(2)<---------AtMYB61--------->MYB111(2)   gatgcagatccagatggtggaggagggattacggttgtgacggcggagccaggtggatagacggaggttggtggtggttgctggttgttgttgttgttgt  25434300                         <---------WOX13(1)                        <------------CBF                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58             <----------DOF2            ------>ZmHOX2a(2)                 <---------TOE2(3)          --------->ARR11(3)                  <---------TOE1(3)          <---------ARR14(2)                 --------->MYB52(1)          <---------AGP1*TSS          <------ZmHOX2a(2)          <---------ARR11(3)         <---------ARR11(3)                                         -----         <---------CCA1(2)       ---------->DOF2                                                <----  <<<<<<<<<<<<<<<<<LFY --------->ATHB12    <---------MYB52(2)                               <--------  >>>>>>>>>>>>>>>>>LFY<---------YAB1 --------->ARR11(3)                  <------------CBF   --------- -----YAB1--------->ARR14(2)  <------ZmHOX2a(2)                         --------->ATHB12    <--------   tattgtccattggatctttgccttgtgattggatcaaaagatcaaactaacgttttagatagtttttgtcatatggattggagtaatagtggataaggta  25434400                                                             <---------AHL20(1)                           <---------YAB1                    --------->AHL20(1)     <---------REM1(1)    <---------AHL20(2)       <------------CBF ---->ETT(2)      <----------DOF2      --------->YAB1       <---------AHL20(2)     --------->ANAC58 -----ETT(2)  --------->GLK1(1)       ----------->TBP     <-----------TBP          --------->ANAC46 -TOE2(3)<---------At4g35610      <<<<<<<<<GATA-1 --------->ATHB12<---------AHL20(2) >DAG2  ------->TEIL  --------------->AGL15      <---------AHL20(2)       <---------YAB1   *TSS------ -TOE1(3)--------->At4g35610<---------AHL20(2)   <---------YAB1  --------->AHL20(2)--------->ANAC58   gacagcgatgtagctgatttctttctatttttatttatctataaaaactatattattgatatatatattatatagtttgattaaaacgacatcgtattaa  25434500                 --------->At5g28300                 --------->LBD16               <------NtERF2              ------>NtERF2             --------->DEAR3(1)             <---------DEAR3(1)             --------->ANAC46           <---------ATERF1(1)          --------->At1g77200          ------->GAMYB--------->DAG2                                       --------->TGA2(1)          ----------->HVH21                                                 --------->bZIP60(1)          --------->DEAR3(1)                                                <---------TGA2(1)         --------->MYB46(3)                                              ----------->TGA1         <---------MYB55(2)                                          <---------------------WRI1        <---------At4g35610                 <---------At4g35610     ------>NtERF2        --------->At4g35610                 --------->At4g35610    --------->DEAR3(1) --------->ZAT2      <---------WRKY12---------->DOF2--------->ALFIN1            ------>NtERF2        --------->At4g35610      <---------WRKY38(1)           --------->At5g28300         --------->DEAR3(1)  <------ZmHOX2a(1)     --------->WRKY18(1)       <---------ZAT14                ------>NtERF2 --------->ANAC46 --------->ZAT14<---------ANAC46 <---------At5g28300         --------->DEAR3(1)  <-----------RAV1(2) --->YAB1--------->DEAR3(2)    <---------REM1(2)         <---------HSFB2a(2)<---------bZIP60(1)     <   tagtttagtcaaccgacgccgtgataaagtgtgttcacggtgatgctgcagaaacaggtctcgacgacgacgacgatgacgacacaggagctagcgatgg  25434600                                        <---------At4g35610                                 <---------ANAC58                                 <---------ANAC58                                 <---------ANAC46                 <----------DOF2                                <------NtERF2              --------->ATHB12                       ---      --------->ANAC58        <---------DEAR3(1)           --------->YAB1                      ------      --------->ANAC58       <---------At4g35610          --------->ICU4                       <----- ------ZmHOX2a(1)         ---------->DOF2             <---------YAB1           <----------DOF2 ------   aaggagagaagcaattggaagaaactattgaagcggcgtttcagataatttcagccatgaatgatgagctttgtaatccgtctttgtggtctacttcagc  25434700                     ------>NtERF2                    --------->DEAR3(1)                          <------NtERF2                    ----------->HVH21                         <---------DEAR3(1)                  ------>NtERF2                              --------->ATERF1(1)               <---------ATERF1(1)                           <---------At4g35610             ------>NtERF2                                   <---------ZAT2             --------->LBD16                                 --------->ZAT2             <------NtERF2                                   --------->At4g35610            --------->DEAR3(1)                              <---------RAP2.3(1)            --------->RAP2.6(2)                             <---------ATERF1(1)          ------>NtERF2                                    <---------RAP2.6(2)                     <-      --------->ARR14(2)                              --------->DEAR3(1)                         <---      <---------ARR14(2)                            --------->LBD16                              ----     --------->GLK1(1)                              <---------At4g35610                         <----     <---------GLK1(1) <---------ANAC46           <---------LBD16                             <------  --------->LBD16--------->DEAR3(1)             --------->ARR14(2)                           -------- ----->P  --------->LBD16                       <---------ARR14(2)    --------->ATHB12       -------- --->ZAT2 <---------At4g35610           <---------At4g35610<---------RAP2.3(2)               <------- ----At4g35610 ------>NtERF2          <---------DEAR3(1)<---------ARR14(2)           --------->ATHB12 --->At4g35610----------->HVH21   <---------MYB46(3)------>NtERF2   <---------WOX13(1)      <--------   taccccgagttccgccgcgacgacgacgggttctaatggttcggctctcgtttccgccgatgcggctgcgattgatggaacatcgcatcattcggaatct  25434800              <---------ANAC46              <---------DEAR3(1)              --------->ALFIN1             <---------ABI4(1)             <------NtERF2            <---------ATERF1(1)            ------>NtERF2           <---------RAP2.3(3)           <---------PCF2          <------NtERF2         <---------RAP2.3(1)         <---------ATERF1(1)         <---------MYB46(3)        <---------ANAC58        <---------ANAC58        <---------DEAR3(1)        <---------ANAC46       --------->ATERF1(1)       <------NtERF2       <---------LBD16     <---------DEAR3(1)     --------->ALFIN1    --------->ATERF1(1)   <---------MYB46(3)  <---------AtMYB61  --------->ALFIN1 ----------RAV1(1) ------At4g35610 ----->At4g35610   <------ZmHOX2a(1) -------RAV1(1) <------NtERF2 ---At4g35610--------->ATERF1(1) ->ARR14(2)<---------DEAR3(1)                                                    <---------ANAC58 ->GLK1(2)--------->ATERF1(1)                               --------->YAB1       <---------ANAC58 --ARR14(2)--------->ALFIN1                   <---------ANAC58                   <---------ANAC46 -GLK1(2)--------->LBD16        <---------ZAT6<---------ANAC58           <---------bZIP60(2)   gctggtggtggcgggggcggaggaagtggaaatagtgttttggatgaggcgagtcttcggtataagaactcagtgacttcgcttcgtgctgttcttgctg  25434900                                                   <---------HSFB2a(2)                                                   <---------HSFC1(1)                                                   --------->HSFB2a(2)                                             <---------------AGL15                     ==============                                      <-----------GT1                                  <------ZmHOX2a(1)                 --------->ARR11(3)----------->GT1 --------->HSFC1(1)                <---------TOE2(3)      --------->ARR14(2)           --------->bZIP60(1)                         <---------ZAT14      <---------ARR14(2)           <---------bZIP60(1)                        <---------HSFB2a(2)      <---------GLK1(2)  --------->YAB1      --------------->AGL15            --------->HSFB2a(2)<---   cgattccaaattcgcagaaggtattgaacataatgtgatgttactaactatttcgagaagtgttttgttctgagttgtttctggactgaggaaattttga  25435000  Previous    Next  AGI:  At5g63470.1    Description:  CCAAT-box binding transcription factor Hap5a, putative. Identical to Nuclear transcription factor Y subunit C-4 (NFYC4) [Arabidopsis Thaliana] (GB:Q9FMV5); similar to HAP5A (Heme activator protein (yeast) homolog 5A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G48590.1); similar to unknown [Populus trichocarpa] (GB:ABK95059.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 25432927    to: 25434324    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63480.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK95190.1) Range:  from: 25434491    to: 25435861    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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