Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          --------->MYB52(1)                                 ------>ZmHOX2a(2)                     <---------GLK1(1)                                 ==================HOX2a_HOX2a         --------->CCA1(2)                           <---------ANAC58                            --------->GLK1(1)                           --------->TOE2(3)                          <---------ARR11(3)   --------->At4g35610                      ==================HOX2a_HOX2a                   <---------ARR14(2)   --------->ZAT2                      ------>ZmHOX2a(1)                   --------->ANAC58      --------->HSFB2a(2)                <---------At4g35610                       --------->ANAC58      >>>>>>>ZML2<---------At4g35610               ------->TEIL<---------ANAC58 <------ZmHOX2a(1) --------->GLK1(1) <---------HSFB2a(2)          --------->At4g35610  <---------ARR11(3)  <---------ARR11(3) --------->ARR11(3)   <---------ZAT2   accaagagccgatgctgcatcttcctcttccttgatctcttccctaggaacaatatcaacaaggaaatcgaagatatcggttctagtaatcgcagcagcg  25433900                           ---------->ID1          ------>ZmHOX2a(2)                         <---------MYB46(3)       <------ZmHOX2a(2)                         --------->MYB52(2)       --------->CCA1(2)                       <---------MYB52(1)        --------->AGP1  --------->HSFB2a(2)                  <---------TOE2(1)              <-----------ARR10                  <---------TOE1(1)              <---------ARR14(2)                 --------->SPL7                  --------->ARR11(3)                       --------->HSFB2a(2)               --------->ZAT18                   <---------AGP1  <---------HSFB2a(2)      <---------HSFB2a(2)               --------->TOE1(2)                 <---------ARR11(3)                   <----------DOF2               <---------SPL7                    --------->ARR14(2)                --------->ANAC58--              <---------ANAC58            --------->ANAC58       --------->HSFC1(1)--------->ANAC58<-              <---------ANAC58            --------->ANAC58 <---------TOE1(2)  --------->ZAT18      --             <---------------AtSPL8     --------->REM1(2) <---------MYB52(1)--------->At4g35610   <--             --------------->AtSPL3  <---------ANAC46   --------->YAB1   ---------->DOF2 <---------ANAC46   atatcgtttttctgaagcgtacgacgtttgttctcttcagcgtgaagccaagatctaatcgtaagttcgagaatgaaaagctcacaagctttcgcgaaga  25434000                       --------->ANAC58                  <------ZmHOX2a(2)              <------NtERF2             --------->LBD16<---------ARR11(3)            <---------DEAR3(1)            <---------ANAC46--------->ARR11(3)           <---------LBD16------->TEIL            <---------AHL20(2)           <---------At4g35610                 <---------ARR11(3)       <---------ZAT2         <---------DEAR3(1)<---------CCA1(2) <---------YAB1             --------->ZAT2     <---------MYB46(3)--------->ANAC46      --------->ICU4             --------->At4g35610     --------->ABI4(2) --------->ANAC58    --------->YAB1               <---------At4g35610 ------->GLK1(2)<---------GLK1(1)       <----------DOF2               --------->ZAT18 --------ARR14(2)<---------ARR11(3)   <---------At4g35610     <---------STY1(2) ------->ARR14(2)--------->ARR11(3)   --------->At4g35610     --------->STY1(2)              -------- -------GLK1(2) --------->GLK1(1)  <---------At4g35610   --------->CCA1(2)----------->HVH21 ---------   gaatcggtgcttcggcggagatcatacgcacatcttcatcagctttcatgatttttttgatacgagctagagggagctgatggtttttgaaatcgtttac  25434100                                                                                         ----------->HVH21                                                                --------->ALFIN1         --------->WRKY38(1)                                                                <---------AtMYB61       <---------MYB52(1)                                                      <---------ANAC58                 --------->LBD16                                                      <---------ANAC58                 --------->At4g35610                                                      <---------ANAC46                 <---------At4g35610                                                 <---------MYB46(3)<---------AtMYB61 <---------LBD16                                                 <-----------RAV1(1)    <-----------RAV1(1) <--------                                        <---------MYB46(3)      <---------DEAR3(1)  =================                                        <-----------RAV1(1)  <---------AtMYB61   ------>ZmHOX2a(1)      ------>ZmHOX2a(2)  <---------HSFB2a(2)   <-------GAMYB --------->ALFIN1    ==================== ->WRKY12                --------->HSFB2a(2)  <-----------RAV1(1)<---------MYB46(3) ------>ZmHOX2a(1) >DOF5.7(2)       <---------MYB52(1)  <---------At4g35610   <------ZmHOX2a(1)   <---------ALFIN1   ctgttcgatctcttgtctctggtatgtccagaacatttgaagctgttgctgttgttgctggaggaggtggtggtatgtcgctcctcctccggtgactatt  25434200                                                --------->ZAT2                                                --------->O2                                                <---------ZAT2                                                <---------O2                                            ------>NtERF2                                           --------->ARR14(2)                                          --------->RAP2.3(1)                <---------ANAC58                                          --------->ATERF1(1)                <---------ANAC58                                         <---------ATERF1(1)                 <---------ANAC46                                         <---------RAP2.3(1)               <---------MYB46(3)                                        <---------DEAR3(1)                 --------->MYB111(2)                                        --------->ALFIN1                 <-------GAMYB                                       --------->ATERF1(1)              <---------MYB46(3)                                       <---------LBD16                  --------->MYB55(2)                                       <------NtERF2                   <---------AtMYB61                                      ------>NtERF2                 --------->ALFIN1                                      <---------RAP2.3(1)           <---------AtMYB61                                      <---------ERF1              <---------MYB46(3)                                      <---------RRTF1(1)          <------MYB83                                     <---------RRTF1(3)          --------->MYB55(2)                                     <---------bZIP60(1)         <---------DEAR3(1)                                     <---------RAP2.3(3)         --------->MYB46(2)              --------->ALFIN1       <---------RAP2.3(2)         --------->MYB111(2)           <---------AtMYB61         <---------O2                --------->MYB111(1)       <-----------RAV1(2)           <---------ANAC46            --------->ALFIN1     =====================HOX2a_HOX2a<---------DEAR3(1)          <---------MYB46(3)     <------ZmHOX2a(2)               <---------RRTF1(2)         <---------MYB55(1) <-------GAMYB    <---------ARR14(2)               --------->ATERF1(2)        <--------P<--------P    --------->AGP1 <------ZmHOX2a(1) <---------RAP2.6(2)       <-------GAMYB<---------At4g35610    --------->ARR14(2)               <---------ATERF1(2)      --------->MYB55(2)  <---------MYB46(3)    --------->ARR11(3)            ----------->HVH21           <---------MYB46(3)<-------GAMYB   <---------At4g35610            ----------->TGA1 <---------MYB46(3)<---------MYB46(3)   --------->At4g35610          <---------MYB46(3)--------->ALFIN1<------MYB46(1)<--------P     <---- -YAB1 <---------HSFB2a(2)    <-------GAMYB<---------ARR14(2) ------------>AtMYB84--------->MYB55(2) ===========HOX2a_HOX2a     <---------YAB1<------NtERF2      <---------TOE2(2) <---------MYB46(3) ===========HOX2a_HOX2a     <---------TOE2(3) <-----------RAV1(2)<---------AtMYB61--------->MYB111(2)   gatgcagatccagatggtggaggagggattacggttgtgacggcggagccaggtggatagacggaggttggtggtggttgctggttgttgttgttgttgt  25434300                         <---------WOX13(1)                        *TSS                  <---------ANAC58                  <---------ANAC58                  <---------ANAC46             <----------DOF2            ------>ZmHOX2a(2)                 <---------TOE1(3)          <---------ARR11(3)                  <---------TOE2(3)          --------->ARR11(3)          <------ZmHOX2a(2)          <---------ARR14(2)         --------->ARR11(3)          --------->ARR14(2)     ---------->DOF2                                                -----         <---------CCA1(2)    <------ZmHOX2a(2)                                                 <----  <<<<<<<<<<<<<<<<<LFY --------->ATHB12      --------->MYB52(1)                             ---------  >>>>>>>>>>>>>>>>>LFY<---------YAB1 <---------ARR11(3)                  <------------CBF   <-------- -----YAB1<---------AGP1<------------CBF   <---------MYB52(2)           --------->ATHB12    <--------   tattgtccattggatctttgccttgtgattggatcaaaagatcaaactaacgttttagatagtttttgtcatatggattggagtaatagtggataaggta  25434400                                                             <---------AHL20(1)                           <---------YAB1                    --------->AHL20(1)     <---------REM1(1)    <---------AHL20(2)       <------------CBF ---->ETT(2)      <----------DOF2      --------->YAB1       <---------AHL20(2)     --------->ANAC58 -----ETT(2)  --------->GLK1(1)       ----------->TBP     <-----------TBP          --------->ANAC46 >DAG2  ------->TEIL  --------------->AGL15       --------->ATHB12<---------AHL20(2) -TOE1(3)--------->At4g35610      <<<<<<<<<GATA-1<---------YAB1  --------->AHL20(2)--------->ANAC58 -TOE2(3)<---------At4g35610<---------AHL20(2)   <---------AHL20(2)       <---------YAB1   *TSS------   gacagcgatgtagctgatttctttctatttttatttatctataaaaactatattattgatatatatattatatagtttgattaaaacgacatcgtattaa  25434500                 --------->LBD16                 --------->At5g28300               <------NtERF2              ------>NtERF2             <---------DEAR3(1)             --------->ANAC46             --------->DEAR3(1)           <---------ATERF1(1)          --------->At1g77200          --------->DEAR3(1)                                                --------->bZIP60(1)          ----------->HVH21                                                 <---------TGA2(1)          ------->GAMYB--------->DAG2                                       <---------bZIP60(1)         <---------MYB55(2)                                              ----------->TGA1         --------->MYB46(3)                                          <---------------------WRI1        <---------At4g35610                 <---------At4g35610     ------>NtERF2        --------->At4g35610                 --------->At4g35610    --------->DEAR3(1) --------->At4g35610      <---------WRKY38(1)           --------->At5g28300          ------>NtERF2        --------->ZAT2      <---------WRKY12---------->DOF2--------->ALFIN1           --------->DEAR3(1)  <------ZmHOX2a(1)     --------->WRKY18(1)       <---------REM1(2)              ------>NtERF2 --------->ANAC46 --------->ZAT14<---------ANAC46 <---------At5g28300         --------->DEAR3(1)  <-----------RAV1(2) --->YAB1--------->DEAR3(2)    <---------ZAT14           <---------HSFB2a(2)--------->TGA2(1)       <   tagtttagtcaaccgacgccgtgataaagtgtgttcacggtgatgctgcagaaacaggtctcgacgacgacgacgatgacgacacaggagctagcgatgg  25434600                                        <---------At4g35610                                 <---------ANAC46                                 <---------ANAC58                                 <---------ANAC58                 <----------DOF2                                <------NtERF2              --------->YAB1                         ---      --------->ANAC58        <---------DEAR3(1)           --------->ATHB12                    ------      --------->ANAC58       <---------At4g35610          --------->ICU4                       ------ ------ZmHOX2a(1)         ---------->DOF2             <---------YAB1           <----------DOF2 <-----   aaggagagaagcaattggaagaaactattgaagcggcgtttcagataatttcagccatgaatgatgagctttgtaatccgtctttgtggtctacttcagc  25434700                     ------>NtERF2                    --------->DEAR3(1)                          <------NtERF2                    ----------->HVH21                         <---------DEAR3(1)                  ------>NtERF2                              <---------ZAT2               ------>NtERF2                                 --------->ATERF1(1)             <------NtERF2                                   --------->At4g35610             ------>NtERF2                                   <---------At4g35610             --------->LBD16                                 --------->ZAT2            --------->RAP2.6(2)                             <---------RAP2.3(1)            --------->DEAR3(1)                              <---------ATERF1(1)          <---------At4g35610                              <---------RAP2.3(2)                     <-      <---------ARR14(2)                              --------->DEAR3(1)                         ----      --------->ARR14(2)                            --------->LBD16                              <---     <---------GLK1(1)                              <---------At4g35610                         <----     --------->GLK1(1)                            <---------LBD16                             <------  --------->LBD16--------->DEAR3(1)             --------->ARR14(2)                           -------- ----->P  ------>NtERF2<---------ANAC46         <---------ARR14(2)    --------->ATHB12       -------- --->ZAT2 --------->LBD16               <---------At4g35610<---------RAP2.6(2)               <------- --->At4g35610 <---------ATERF1(1)    <---------DEAR3(1)<---------ARR14(2)           --------->ATHB12 ----At4g35610----------->HVH21   <---------MYB46(3)------>NtERF2   <---------WOX13(1)      <--------   taccccgagttccgccgcgacgacgacgggttctaatggttcggctctcgtttccgccgatgcggctgcgattgatggaacatcgcatcattcggaatct  25434800  Previous    Next  AGI:  At5g63470.1    Description:  CCAAT-box binding transcription factor Hap5a, putative. Identical to Nuclear transcription factor Y subunit C-4 (NFYC4) [Arabidopsis Thaliana] (GB:Q9FMV5); similar to HAP5A (Heme activator protein (yeast) homolog 5A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G48590.1); similar to unknown [Populus trichocarpa] (GB:ABK95059.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 25432927    to: 25434324    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63480.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK95190.1) Range:  from: 25434491    to: 25435861    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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