Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               <-----                                                                                             --------                                                                                           ------>ZmHOX2a(1)                                                                                          --------->TOE1(3)                                                                                          --------->TOE2(3)                                         --------->At4g35610                          <---------CCA1(2)           --------->ANAC58              <---------At4g35610                      <---------ANAC58           --------->ANAC46         --------->ZAT6   --------------->AtSPL8       <---------ANAC58 -->RAV1(1)--------->ANAC58 <----------DOF2   --------->GLK1(1)                   <---------ANAC46<--   agacaacaacaacaaggaatcgtttcttctctttagaaacactagctgatttcttcttgtactccaaactaaaatccaaacaaggcttgtatccttcacc  25409400                                                                                          --------->CCA1(2)                                                                --------->MYB52(1)     --------->LBD16                                                                <---------DOF5.7(2)   <---------ANAC46                                                               ----------->HVH21     <---------LBD16                                            <---------GLK1(2) <---------MYB52(1)   --------->ARR14(2)                                          --------->LBD16    <---------DEAR3(2)    <---------ARR14(2)                                         --------->ANAC46    --------->LBD16      --------->HSFB2a(1)                                         --------->LBD16   <-----------------AGL1 --------->ZAT2                                         <---------HSFB2a(2)<---------ATERF1(2)   <---------At4g35610                                         --------->HSFB2a(2)--------->ATERF1(2)   --------->At4g35610                                        <---------LBD16    ----------------->AGL1 <---------HSFC1(2)    <---------MYB46(3)                  <---------HSFB2a(2)<---------LBD16   --------->ALFIN1   <--------P                   <---------MYB52(1)         <-----------------AG   <---------HSFB2a(1)  <-------GAMYB                <-----------HVH21   ------>ZmHOX2a(1)        ------->MYC3 --------->ARR14(2) ---->ATHB12                ------>ZmHOX2a(1)<---------KAN4(2)--------->DOF5.7(2) <---------ZAT2 ----YAB1 --------->HSFB2a(2)  --------->LBD16--------->HSFB2a(1)           <-------MYC3 <---------ARR14(2) ->REM1(1)<---------HSFB2a(2) --------->ANAC46<---------HSFB2a(1)  ------->GAMYB  --------->HSFC1(2) -------MYB52(1)  <----------DOF2  <----------TaMYB80 ------>ZmHOX2a(1)    <---------ANAC46<-------TEIL   attgggttgtttccaaaactctttctcttcctccgtcatattcccggaatgtcctcctctcgccggtaacggaaacaacgtggaagctccggatacagca  25409500                      ====================================HOX2a_HOX2a             --------->MYB52(1)            ----------->HVH21            ----------->TGA1           ------>ZmHOX2a(2)          --------->At4g35610          <------ZmHOX2a(2)          --------->CCA1(2)         --------->AGP1         --------->ARR11(3)         <---------ARR14(2)                                                        >>>>>>>>>>>>>>>>>LFY         --------->ARR14(2)                                                        <------ZmHOX2a(2)         <---------ARR11(3)                                           --------->ANAC58         <---------AGP1                                               --------->ANAC46       ----------->ARR10        --------->At4g35610             --------->ALFIN1  <---------ARR14(2)  <------MYB83 <---------DEAR3(1)                     <---------At4g35610     <---------DOF5.7(2)  <---------MYB46(3)  --------->ETT(2)                --------->At4g35610    --------->WRKY12  ----------->GT1     ------>ZmHOX2a(2)            <------ZmHOX2a(1)  --------->ANAC58       --------  <------MYB46(1)--------->At5g28300    --------->GLK1(2)    --------->ARR11(3)   --------->ARR14(2)   agggaggttaagatctgacggtgatcgacatcggagatgaagaatttgagagaggaagcggaagatgtggagacgcaagttgacgatccagtgtctaaag  25409600                                                                                               ------                                                                                               <-----                                                                                 <------MYB46(1)-----                                                                                --------->MYB111(2)                                                                                <XXXXXXXXXXXXXXXXXXXXMIR827                                 ---------->DOF2   <----------ID1        <------NtERF2    <---------MYB46(3)                    --------->LBD16                ----------->GT1 --------->ALFIN1   <---------AtMYB61                   --------->LBD16      --------->CCA1(2)    --------->ALFIN1   --------->MYB46(2) <- -->DOF2          <---------HSFB2a(2) <---------------------WRI1<---------AtMYB61<------MYB83  <-----   aaaatgtgagaaatgaaattcccgagaaaacgagagaaagagagatgagaagaaggaaaaactgtggaggtgggcatcgagtttggtgatggtggtttag  25409700                                                                           ---------->DOF2                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                                 <-------GAMYB     ------>NtERF2                                               <------NtERF2   --------->LBD16                                               --------->ATERF1(1) <---------LBD16                                                <---------MYB46(3) <---------ANAC46                                              <---------ANAC46 --->MYB59                                                     <---------RAP2.6(2) ----TOE1(3)                        <------ZmHOX2a(1)          <---------ANAC58 ---->ANAC55(2)            <---------ZAT14                     <---------ANAC58                   <-- --------ARR14(2)       <---------ANAC46                    --------->ALFIN1               ---------- ----TOE2(3)      <-----------RAV1(2)       --------->CCA1(2) <---------LBD16            <---------YAB1   gtatcggggacttgatttcttcaggggagtgaagaagaggagagagagatggaagaatggagatggcggatgcgaagtaaagaatggatttttgatagtt  25409800                                  <-------GAMYB                                 ------>ZmHOX2a(2)                          <----------DOF2                      <---------GLK1(2)                     --------->HSFC1(2)                     <---------HSFC1(2)                                                 <-------TEIL                     --------->At4g35610               <------MYB46(1)        --------->CCA1(2)                     <---------At4g35610               <---------MYB46(3)    --------->ARR11(3) -------YAB1   ---------->DOF2   <---------MYB46(3)    <------MYB83---------->DOF2     --------->GLK1(2) ----------->WRI1 <---------At4g35610                <---------MYB52(1)      <---------ARR11(3)   ctcatcgatttcgccattgaagcagcttctttcgatcgttgaagaaagtttctcagttggttctctgtgcaaagagagagatatgtgagattcagttaca  25409900                       --------->LBD16                      <---------LBD16                     ------->TEIL                     --------->ARR11(3)                      --------->LBD16                    --------->MYB52(1)                <---------ARR11(3)                     <---------LBD16                    ------->GAMYB                 <-----------TBP                    <---------LBD16--------->ANAC58    --------->MYB46(3)       ----------->RAV1(2)          --------->GLK1(2)        --------->ANAC58    <---------MYB52(2)      ------>NtERF2        <          <---------YAB1--------->LBD16              --------->MYB52(1)  <------------CBF <---------CCA1(2)   gagacttctgatattcttgttttcccgggaaaataagaagccaagtacgaagtactaacgaaccgagaaacttcaaattgccccctggttttatatcttc  25410000                       <---------AHL20(2)                       --------->AHL20(2)                       --------->AHL20(1)                      --------->AHL20(2)                  <---------AHL20(2)                  --------->AHL20(2)                 <---------AHL20(2)                 <---------AHL20(1)             <---------MYB52(1)                   --------->ATHB12            --------->At5g28300                   <---------MYB46(3)           ----------->GT1 --------->YAB1      ----------->GT1        <------ZmHOX2a(1) <---------YAB1    --------->ARR14(2)                    <-----------GT1     <---------ICU4   <---------AHL20(2)    --------->GLK1(2)               <-------TEIL            -   <xxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------ARR14(2)          ----------->GT1           <-- ---------YAB1   --------->AHL20(2)        <---------GLK1(2)        ---------->DOF2      <---------ANAC55(2)   ttatgaataaggaccgtaatttaattttattataagtttagccccgaatcggtgattagatgtttagaataaaagagttacatttaacatcacgtttaca  25410100                                                    <---------ANAC58                                                    <---------ANAC46                                                    <---------ANAC58                                         <---------ANAC58                                         <---------ANAC58   --------->ATHB12                                      <---------TOE2(3)    <-------TEIL                                      <---------TOE1(3)<---------TOE1(2)                    <--------          <-----------RAV1(1)      <---------MYB52(1)  <---------TOE2(2)                    <--------      <----------DOF2      <---------ANAC58   <---------LBD16                               ---------      <---------DAG2       <---------ANAC58 <---------WRKY18(1)                    ---------->DOF2 <- ---------->GT1<---------ANAC58   <-------GAMYB    <-------TEIL  --------->At4g35610        --------- ----------CBF <---------ANAC58 <---------ANAC46 <---------MYB52(1)            ---------->DOF2 ------   aattgtgactttatgttgcgaaccagttgtcgtttcggttaaggcttgcccggttcgtatgttcattagcttagctctgtataaagaaagagactacact  25410200                                                                                        <------MYB46(1)                                                                                        ----------->GT1                                                                                        <------MYB83                                                                                  --------------->AGL15                                                                                 --------->ANAC55(2)                                                   --------->GLK1(2)             <---------------AGL15                                                  <---------ARR14(2)             <---------ANAC55(2)                                                  --------->ARR14(2)            =====================     --------->ARR14(2)                    <---------YAB1                       <--------------------    <---------CCA1(2)                    --------->YAB1                         <-----------------AGL1    ------>ZmHOX2a(1)                    <---------ICU4 ----------->GT1         <-----------------AG -ZAT14                        <---------At5g28300<---------GLK1(2)            <-----------GT1 -ZAT18                       <-----------GT1    --------->At4g35610        ----------->GT1---------- >ZAT14                   --------->AHL20(2)   --------->YAB1               --------->ANAC58 --------At4g35610        <---------AHL20(2)--------->YAB1      --------->MYB52(1)=================== >ZAT18               ----------->GT1   --------->ICU4 --------->LBD16      --------->ANAC58 --->ANAC46      <-----------GT1        <---------YAB1<---------ANAC46 <----------ID1  --------->MYB59   catctcctatcttctgtttaaaccttgttaaattaccctcttattattatcagattccgagtaaaaaaacgatgagacaagttacttatttggtaaagag  25410300  Previous    Next  AGI:  At5g63390.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68265.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) Range:  from: 25407738    to: 25409817    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63400.1    Description:  ADK1 (ADENYLATE KINASE 1); adenylate kinase. Identical to Adenylate kinase 1 (ADK1) [Arabidopsis Thaliana] (GB:O82514;GB:Q9FMW2); similar to adenylate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G50370.1); similar to Os11g0312400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067759.1); similar to unknown [Populus trichocarpa] (GB:ABK93572.1); contains InterPro domain Adenylate kinase; (InterPro:IPR000850); contains InterPro domain Adenylate kinase, subfamily; (InterPro:IPR006259); contains InterPro domain Adenylate kinase, zinc-finger lid region; (InterPro:IPR007862); contains InterPro domain Adenylate/cytidine kinase, N-terminal; Range:  from: 25410227    to: 25412133    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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