Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     ----------->GT1                                                   --------->LBD16                                                  <---------DEAR3(1)                                              <-------TEIL                                              --------->SPL7                                           <---------ANAC58                                   <------ZmHOX2a(2)                                   --------->ARR14(1)                                   --------->CCA1(2)                                  --------->AGP1 <---------LBD16                                  <---------ARR14(2)                          ---------->DOF2                                  --------->ARR14(2)                   <---------ETT(2) ----->ZAT18                     <---------At4g35610                   --------->ETT(2) ----->ZAT14           --------->DEAR3(1)  <---------ANAC58           <------ZmHOX2a(2)          <--- ------ZAT14        <---------ALFIN1------>ZmHOX2a(2)        --------->MYB46(3)         ---------->DOF2   tcactgacttcgacttgatgactcacctccgattcagatccgattgggttcgccggtgaaacaacaacaccgatcgacatcaaagctaagtaaagcactg  25406900                                                                  --------->LBD16                               ----------->RAV1(1)      --------->GLK1(1) <-------TEIL                          ---------->DOF2   <------NtERF2        --------->HSFB2a(2)                      <------ZmHOX2a(1)--------->HSFB2a(2)       --------->LBD16                     ----------->GT1   <---------HSFB2a(2)      <---------LBD16 ------MYB52(1)<------ZmHOX2a(1)      <---------LBD16   <---------GLK1(1)--------->CCA1(2)--------->ZAT6   gtatgtccaacgaagaaggagagaggataaaagcgacatttctggaggcaagagaaggaaatcgctcccggagagatacagcaagagaacgaactctacg  25407000                                                                                    --------->ALFIN1                                                                                   <-------PIF5                                                                                   ------->PIF5                                                                                  <---------At4g35610                                                                                  <---------ZAT2                                                                                  <------MYB46(1)                                                                                 --------->MYB55(2)                                                                                 --------->MYB111(1)                                                                                 <---------MYB46(3)                                                                                <---------ANAC46                                                                                <-----------RAV1(2)                                                                               <------NtERF2                                                                              ------>NtERF2                                                                             ----------->HVH21                                                                             --------->ALFIN1                                                                            --------->ATERF1(1)                                                                            <-------GAMYB                                                                            <------NtERF2                                                                           <---------MYB46(3)                                                                           <---------ATERF1(1)                                                                           <---------DEAR4(2)                                                                           <---------DEAR3(2)                                                                          <---------DEAR3(1)                                                                          --------->ALFIN1                                                                          <---------DREB2C(2)                                                                         <------NtERF2                                                     <---------TOE2(3)   <---------ABI4(1)                                                     <---------TOE1(3)  --------->LBD16     <--------                                                <------MYB46(1)         ------>NtERF2       ---------                <---------TOE2(3)               <------MYB83           --------->ANAC46    <------ZmHOX2a(1)   --------->ARR11(3)         --------->ZAT2   --------->MYB46(2)      <---------LBD16 <---------ANAC46   <---------ARR11(3)         <---------ZAT2   --------->MYB59        <---------LBD16<---------MYB46(3)  --------->At4g35610  <-----------GT1        <--------P           <-----------GT1<------MYB83   aagaagctctccataagtgaggttatcaccagagctcgagttaactaggtaggttaaggcttcaatgtttttcccggcggtggcaggtggtgaggatttg  25407100                           <------NtERF2                         <---------DEAR3(1)                         <---------ANAC46                        <---------LBD16                        <---------At4g35610                        <------NtERF2                        <---------ABI4(1)                        --------->ATERF1(1)                        --------->At4g35610                       <---------ERF1                       ------>NtERF2                       <---------ORA47(2)                       <---------DEAR4(2)                       <---------ATERF1(1)                       <---------RAP2.6(1)                       <---------RRTF1(1)                       <---------RAP2.3(1)                      <---------RAP2.3(3)                      <---------ATERF1(2)                      --------->ATERF1(2)                      <---------RAP2.3(2)                      <---------RRTF1(3)                      --------->DEAR3(1)                      <---------DEAR3(1)                                                     --------                     <---------At4g35610                                                     --------                     <---------ABI4(1)                                                      <--------                     <---------LBD16                                                       <---------At4g35610                     --------->ATERF1(1)                                                   <-------GAMYB                    <---------RAP2.3(1)                                                <-----------HVH21        --------->DAG2<---------RRTF1(2)------>ZmHOX2a(2)                             ===============       ---------->DOF2<---------RAP2.6(2)                                             ------>ZmHOX2a(1)  <------ZmHOX2a(1)<---------DEAR3(1)   =============HOX2a_HOX2a                 <---------GLK1(2) -ARR14(2)      --------->ARR14(2)  <-------TEIL       ---------->DOF2     <---------YAB1 <---------MYB46(3) >ARR14(2)      <---------ARR14(2) <--------P <------ZmHOX2a(1)<----------ID1 <---------WOX13(1) ----   agtaggagagaaagcgcgaattcggcggcggagagaggttgatctataggaggtagagaaagagagggacgaagactgtgatagattcctgtccgttgat  25407200                                                                                          --------->At5g28300                                                                                          <------NtERF2                                                                                         <---------MYB46(3)                                                                                         *TSS                                                                                        <---------DEAR3(1)                                                                                       <---------ABI4(1)       <---------At4g35610                                                             <------NtERF2       <---------GLK1(1)                                                               --------->ATERF1(1)       <---------ZAT2               <<<<<<<<<MYB2                                     <---------ERF1       --------->ZAT2             <------MYB46(1)                                     ------>NtERF2<-       --------->At4g35610      <---------MYB52(1)                                    <---------DEAR3(2)       --------->GLK1(1)       <-------GAMYB --------->At4g35610                      <---------ORA47(2)     <------NtERF2   --------->MYB52(1)  <-----------TGA1                             <---------RAP2.3(1)    --------->LBD16--------->YAB1<---------TOE2(2)                                   <---------DEAR3(1)  <---------LBD16 <---------ATHB12<---------MYB46(3)                                 <---------At1g77200 ->WRKY38(1) <-----------HVH21<---------MYB46(3)                                     <---------RAP2.3(3) ->WRKY12   --------->LBD16   <---------ANAC46     --------->HSFB2a(2)        <----------DOF2      <- -MYB52(1)<---------LBD16--------->At4g35610 <---------At4g35610    --------->CCA1(2)<---------DREB2C(2) ===HOX2a_HOX2a --------->WOX13(1)<------MYB83     <---------HSFB2a(2)       <---------ICU4     ----- -->ZmHOX2a(2)--------->WRKY18(1)<---------TOE1(2) <---------HSFC1(1)<-------TEIL  <-----------HVH21   cgaagccggagctccggtcaatcaaacggctgtcgttggttttcgtcagcattctggaagacgattagagatacagtaatcttttcgtcggcggtgaaca  25407300              --------->ARR11(3)              <---------ARR11(3)              --------->ARR11(1)              <---------ARR14(2)            ----------->ARR10                  --------->WOX13(1)        --------->HSFB2a(2)                  ------------>CBF        <---------HSFB2a(2)              <---------ANAC58    --------->DEAR3(1)                   <---------ANAC55(2)   --------->ATERF1(1)                   <---------ANAC58   <------NtERF2                         --------->ANAC55(2)   ----------->RAV1(2)                   <---------O2  <---------ATERF1(1)                    --------->TGA1a     ------------>CBF  ------>NtERF2                <---------AHL20(2)            <---------ATHB12                     <-- --------->ANAC58              --------->AHL20(2)           ------>MYB46(1)            --------->At5g28300 --------->ANAC58           --------->AHL20(2) <---------GLK1(1)                      ------->GAMYB --------ANAC58     ------->TEIL         <---------TGA1a    ------>MYB83            --------->RAP2.6(3) --------ANAC58--------->CCA1(2)         --------->O2      --------->WOX13(1)      <-----------GT1--- ---->TOE1(2) --------->ARR14(2)<---------AHL20(2)       ------------>CBF          --------->MYB52(1)   tgcgcgcctgcgagaagatatgaactcacataaattaatgcatacgtggcaatccctaaaccaatcaatgttttttttttttttttaacggcaaatcgat  25407400                                                                                        <---------PCF2                                                                                       ----------->TCP11(1)                                                                                   <-----------RAV1(1)                                                                                  ------>ZmHOX2a(2)                                                                                 --------->CCA1(2)                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR14(2)                                                                                <---------AGP1                                                                                <---------ARR14(2)   <---------AHL20(2)                                                           --------->ARR11(3)   <---------AHL20(1)                                                           <---------ARR11(3)   --------->AHL20(1)                                                           --------->AGP1  --------->YAB1                                        --------->ANAC55(2) ---------->DOF2    ------  --------->AHL20(2)                                    <---------ANAC55(2) ========================= <---------YAB1                                     <-----------HVH21    --------->TOE2(3)     <----- -------AHL20(2)                               --------->DAG2        ================================ ------>AHL20(2)                             ---------->DOF2         <----------DOF2 --------->ALFIN1   tttattatattgttttttgtttacaaaactactaaacaaaataactaaaaaggctgtcaagtatcaacgttctttcgtcaaagatctgtgggccataaat  25407500       <-------MYC4       <-------MYC2       ------->MYC2       -------->ABF1       ------->MYC4       <-------MYC3       ------->MYC3      --------->ANAC46      --------->O2      --------->ANAC55(2)                                                     --------->ANAC58      --------->TGA1a                                                         --------->ANAC58      <---------TGA1a                                                       =========================      <---------ANAC55(2)                                  <---------------AtSPL8      <---------O2                      <---------------AtSPL3  --------->ANAC46               ------  <-----------GT1                      <---------ANAC46    <---------------AtSPL3   --------------->AtSPL8 --->ARR11(3)                        --------->ATHB12      --------------->AtSPL8   --------------->AtSPL3 ===============bZIP_DOF      --------->At4g35610 --------->YAB1--------->ANAC58  --------->GLK1(2) ----ARR11(3)     <---------YAB1<---------ZAT14  --------->ICU4 --------->ANAC58 <---------GLK1(2) ===============bZIP_DOF      <---------At4g35610<---------ATHB12           ---------->DOF2   <------   ctttttacacgtgtctcattcttattagttagagctcagtgatttgtacgaatgatgaaattttgtacgcaaaacatggaaaggaatctgtacatttaca  25407600               -------->ABF1               <-------MYC2               <-------MYC3               ------->MYC3               ------->MYC4           <---------At4g35610               ------->MYC2           --------->ZAT2               <-------MYC4           ----------->RAV1(2)              <---------ANAC55(2)     --------->At4g35610              --------->ANAC46        <---------ZAT2              --------->TGA1a   <---------ANAC58                 --------->ANAC58              <---------TGA1a  <------MYB46(1)                   --------->ANAC58              --------->ANAC55(2)   <-----------RAV1(2)     <------ZmHOX2a(1)              <---------O2     <------MYB83           --------------->AGL15    <---------AHL20(2)         <---------MYB46(3)     <----------DOF2    --------->AHL20(2)        <---------AtMYB61      <---------ANAC58   ------->GAMYB =======================bZIP_DOF<---------ANAC58     <---------ANAC46  --------->MYB46(3) --->ZAT6     ===================================================bZIP_DOF ---At5g28300 --------->O2  <---------MYB52(1)       <---------ANAC58--------->MYB52(1)          ----   gtagatttatatgtacacgtgtctaacgccgattggttgcagctggactagtattgctttgaggagcaaggcaaccgagctataccaatagaccagcgtt  25407700                                                                                   --------->LBD16                                                                                  <---------LBD16                                                                               --------->ANAC46                                                                             <---------ALFIN1 -------                                                                            <-------TEIL      -------                   --------->ANAC58<---------HSFB2a(2)              --------->bZIP60(1)   ===========            <---------ANAC58  ----------->HVH21                     >>>>>>>>>>bZIP19      <------ZmHOX2a(1)            <---------ANAC58----------->RAV1(2)                     --------->ETT(2)      ===========          ------>NtERF2 <---------ATHB12       ------>MYB83         >>>>>>>>>>bZIP23   <-----------RAV1(2)       --------->At4g35610 ------->TEIL        ------>MYB46(1)      <---------ETT(2)----------->HVH21 ----->MYB52(2)    --------->ANAC58--------->HSFB2a(2)             --------->DDF1<---------LBD16  <--   tgtgacaatcgctgccttgagaagcaatgagcctgacctagaagaaacctacagacctgtgttttctatgtcgacacatacactccgggacaggataagc  25407800  Previous    Next  AGI:  At5g63380.1    Description:  4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein. Identical to 4-coumarate--CoA ligase-like 9 (4CLL9) [Arabidopsis Thaliana] (GB:Q84P23;GB:Q9FGW4); similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75661.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 25404637    to: 25407289    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63390.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68265.1); contains InterPro domain Protein of unknown function DUF246, plant (InterPro:IPR004348) Range:  from: 25407738    to: 25409817    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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