Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------ANAC58                                                       <---------ANAC55(2)                                                       --------->ANAC55(2)                                                      <-------TEIL                               --------->ANAC58     <---------ARR14(2)                             --------->MYB52(1)     --------->ARR14(2)                            ----------->HVH21  --------->TOE2(3)                           --------->DEAR3(2)  ----------->RAV1(1)                  ----------->RAV1(2)        -------->P<---------ANAC58                            --             <---------KAN4(2) --------->ANAC58------->GAMYB                                       --           <------ZmHOX2a(1)--------->DEAR3(1)--------->MYB46(3)                                   --          ----------->GT1<---------WRKY18(1)------->GAMYB               <-----------GT1           <--   <---------At4g35610  --------->ETT(2)   <---------MYB111(2)     <---------YAB1   --------->ANAC58   ----------->RAV1(2)  --------->WRKY38(1)<---------MYB55(2)    --------->YAB1     --------->ANAC46   --------->At4g35610  --------->WRKY12   --------->MYB46(3)    ----------->GT1    --------->ANAC58-   tcatcacctgagaggaataaacctggtggaccgacggaaacaacaacaaccacaaatacgtggtctatggtgattaaccttcttgcaagtcatcgaaaac  25316500                 <---------ICU4       <---------ICU4     <---------ARR11(3)<---------TOE2(2)     --------->ARR11(3)<---------TOE1(2)                            ------>NtERF2   --------->ANAC58   <-----------RAV1(2)                    <---------ZAT18            <---------LBD16   --------->ANAC58--------->At4g35610                       --------->ZAT14         --------->At4g35610 ------->ANAC58  --------->YAB1              <-----------GT1 --------->ZAT18       --------->YAB1  <- ------->ANAC58 <---------ATHB12         --------->TOE2(3)   <---------ZAT14    --------->WOX13(1) -- ------->ANAC46------>MYB83       <---------YAB1        --------------------->WRI1<---------ATHB12--- -------LBD16 --------->WOX13(1)<-----------GT1      >>>>>>>>>>>>>>>>>LFY<---------ALFIN1        <--- -------->LBD16------>MYB46(1)  --------->YAB1     <----------DOF2 <---------ETT(1)<---------ICU4----   tccgcaagataatgaccaatcatctcaggtttaatcacgatttcattaaacttctttccattgtgcactccgacaacacttccaatcatctcagggacaa  25316600         ------>ZmHOX2a(1)        <---------ANAC46        --------->TOE2(3)                                <---------ANAC58 --------ARR11(3)                       --------------------->WRI1                          --------- ------->ARR11(3)            --------->ZAT14         <---------ANAC58                   --------->YAB1 ------>YAB1             <---------ALFIN1            <---------ANAC58         <---------HSFC1(2) ------ATHB12         <-----------GT1--------->REM1(1)   <---------ANAC58     --------->HSFC1(2)    < ----->ICU4        xxxxxxxxxxxxxxxx>smallRNA(s)<---------YAB1<----------DOF2 <---------TOE1(2)    <--   tgatcatgttccttagatgtgttttcaccacttcaggcttcatcttgttctcatcgcttgcttctttcttcgcccttcgtagcttcttgatcagaatcag  25316700                           --------->At4g35610                        --------->HSFB2a(1)                        <---------HSFB2a(1)                        --------->HSFC1(2)       --------->TOE2(3)<---------HSFC1(2)       <----------DOF2 <---------ARR14(2)                                                         ---   <---------ANAC58    <-----------ARR10                        <---------TOE2(3)                <---   <---------ANAC46    --------->GLK1(2)                     <------ZmHOX2a(2)                 ------   <---------ANAC58    --------->ARR14(2)        <---------ARR11(3)                          -------- >GLK1(2)              --------->ARR11(3)        --------->ARR11(3)             --------->At4g35610 --------P     ------>ZmHOX2a(1)                 <-----------ARR10   ----------->HVH21     <---------TOE2(3) -------MYB46(3)      <---------GLK1(2)   <-------GAMYB     <---------ARR11(3)  <---------At4g35610   aggttgcttctttaatcctctgtagaatcttctgcgaacacgagcgttgaagagcttagcgagatcaacgtttgacattttgagcagagcatcaacgttg  25316800                                                     <---------MYB46(3)                                                     <---------ANAC58                                                     <---------ANAC58                                                    <---------DEAR3(1)                                                  --------->DEAR3(1)                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->MYB46(3)                                               <---------ALFIN1                                               --------->DEAR3(1)                                             <-----------HVH21                                             ------>NtERF2                                             --------->ABI4(1)                                            --------->ANAC46                                            --------->DREB2C(2)                                            ------->GAMYB                                            --------->RAP2.6(2)                                            --------->DEAR4(1)                                            --------->DEAR3(1)                                            --------->ANAC58                                            --------->ANAC58                                           <------NtERF2                                           --------->ATERF1(1)                        --------->KAN4(2)  --------->MYB46(3)                ------>ZmHOX2a(2)                      ------->TEIL         --------->RAP2.3(1)           --------->WRKY38(1)         --------->YAB1--------->HSFB2a(1)------>NtERF2                  --------->WRKY12 ---->TEIL       <---------ANAC58         <---------ATERF1(1)          <-------GAMYB --------GT1     <---------ANAC58        <---------ALFIN1             --------->MYB52(2) --->WRKY12      <---------ANAC46  <-----------RAV1(1)                <---------MYB46(3) ->TOE2(3)     --------->ARR11(3)<----------DOF2------>NtERF2        <-------TEIL   aaccctctgaatgagaatttcttgaacgttctcttctttgttgccaccgccacggccgtggcaaactctggttcgttgatcgccattgttggaatttgag  25316900                  --------->KAN4(1)                  <---------KAN4(1)                  <----------TaMYB80                                                              <--                 <---------ARR14(2)      <---------ZAT6                <---------AHL20(2)      ------                 ---------->TaMYB80  --------->ZAT14                 <-----------TBP       <---------GLK1(1)                 <---------KAN4(2)   <---------ZAT14               --------------->AGL15   --------->GLK1(1)                 --------->ARR14(2) <---------REM1(1)     <---------ANAC58                --------->ARR11(3)           <------ZmHOX2a(1)      <------MYB83--------->GLK1(1)    <---------------AGL15  <---------ARR11(3)       ---------->DOF2            <------MYB46(1)         <---------ANAC58       <-----------RAV1(1)   ================================================================================MADS_MADS  -------   <---------------AGL15       <------------CBF   <----------DOF2  ==================================   tttttctgcaaaaggatagaatatgccattagagattggtgtagtgagaattctttgtttgcttcactactatttatacaaaaatgttgggagatatcgt  25317000                                                                                             <-------                                                                                           <---------AHL20(2)                                                                                          --------->AHL20(2)                                                                                       -------->ATHB1                                                                                       --------->ATHB51                                               <---------WOX13(1)                      <--------HAHB4        <---------ARR14(2)                    <------------CBF     --------->ARR11(3)  --------->AHL20(2)        --------->ARR11(3)                   --------->ATHB12      --------->AHL20(1)  <---------AHL20(2)        --------->ARR14(2)             --------->TOE2(3)           <---------ARR11(3) <---------ATHB51        >>>>>>>>>ARR2            --------->TOE2(3) -------->ZAP1   <---------AHL20(1) <---------ATHB12        >>>>>>>>>ARR1            <---------MYB59 <---------WRKY18(1)<---------YAB1    --------->ICU4       <------ZmHOX2a(1)        ===================================================================== -------CCA1(2)                 ----------------->AG              <---------AHL20(2)--------->WOX13(1) --->TOE2(3)                    ----------------->AGL1           --------->ICU4   <---------YAB1 <--- ---->GT1 ------>ZmHOX2a(2)    -------->P ---------->DOF2     --------->AHL20(2)  ------------>CBF =================================================MADS_MADS ----------->GT1    <---------YAB1<-------   aaatctctaggatcgtcggaaatatcgaaaacttacctaaatgttaaagattgaccgagtaaatgtaaatatttttgaaatattatcaattatttaatgt  25317100                             <---------MYB46(2)                             <---------MYB111(2)                             --------->MYB46(3)                   <---------CCA1(1)                             <---------MYB111(1)                  <---------RVE1(1)                        <-------GAMYB                            <---------ARR11(3)                       <---------MYB46(3)                        --------->ARR11(3)                   <---------YAB1                               <------ZmHOX2a(1)                 -------->HAHB4-------->P                     <---------TOE2(3)                 <---------ICU4------>MYB83           <------------CBF                 --------->YAB1------>MYB46(1)      <---------ARR11(3) --TOE2(3)      --------->ICU4--------->MYB55(1)    --------->ARR11(3)    --------->TOE2(3) =============================MADS_MADS             --------->ARR14(2)  <---------YAB1 --------GT1    <---------ATHB51<---------ATHB12    <---------ARR14(2)<---------AHL20(2) --TOE1(3)  <-----------------AGL3         --------->CCA1(2)  <---------TOE1(3)   tactaatcttgtaatctaattatggctgttaccaaccatgtcaagataagaacagatattggtttaggatatttattcttaacatagcatacagtagttt  25317200                                  <---------ICU4                                  --------->ATHB51                               <---------ICU4                               --------->YAB1                              --------->AHL20(2)                              <---------AHL20(2)                          <---------AHL20(2)                          <---------YAB1                      <---------RVE1(1)                     <---------GLK1(2)<---------AHL20(2)              <------ZmHOX2a(1)                     --------->ARR11(3)                       --------->CCA1(2)              <-------                     <---------ARR11(3)                      --------->ARR11(1)      <---------AtMYB61              --------->AHL20(2)  --------->AHL20(2)  --------->AHL20(1)          <---------YAB1              --------->AHL20(1)  <---------AHL20(2)  <---------AHL20(2)  --------->DAG2    <--------              <---------AHL20(2) --------->ICU4       --------->AHL20(2) ---------->DOF2   <---------   ttaaaagtttactaaataaaatagattttttattaattatttcatttacatctaaataaaatagatttgggaggaaaaagtattgtgatggtttatcatt  25317300                     --------->ARR14(2)                     <---------ARR14(2)         ------>ZmHOX2a(1)     --------->ARR11(3)     <---------ARR14(3)                                        -------->HAHB4     --------->ARR14(3)                                        --------->YAB1     <---------ARR11(3)                                        <---------ICU4                   -----     --------->ARR14(2)                                        <--------ATHB1             ------>ZmHOX2a(1)     <---------ARR14(2)                                       <---------YAB1            =============     <---------GLK1(2)                                        <---------ATHB51          ------>ZmHOX2a(2) --ICU4  <----------DOF2                     --------->ZAT18  --------->ICU4          <---------ARR14(2) -YAB1 ------>ZmHOX2a(2)     --------->ARR14(2)             --------->YAB1            --------->ARR14(2) --GT1<------ZmHOX2a(2)      <---------ARR14(2)       <----------DOF2       ---------->DOF2    XXXXXX   tcaacaagatcctttggagaacatatttgcatatttggacctgcaagaccactgagcttttgtaataattctttcgaagaaagaaactgatcctcttcct  25317400  Previous    Next  AGI:  At5g63070.1    Description:  40S ribosomal protein S15, putative. Identical to 40S ribosomal protein S15-6 (RPS15F) [Arabidopsis Thaliana] (GB:Q9FML6;GB:Q4PSA0); similar to RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G04270.1); similar to ribosomal S15 protein [Retama raetam] (GB:AAL32040.1); contains InterPro domain Ribosomal protein S15, eukaryotic/archaeal; (InterPro:IPR005713); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222) Range:  from: 25316404    to: 25316886    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63080.1    Description:  transcription factor jumonji (jmjC) domain-containing protein. similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78280.1); similar to hypothetical protein OsI_002311 [Oryza sativa (indica cultivar-group)] (GB:EAY74464.1); similar to hypothetical protein OsJ_002098 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12273.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347) Range:  from: 25317161    to: 25319670    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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