Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------ARR11(3)                                                                                       --------->ARR11(3)                                                                                     <---------YAB1                                                                                  --------->ICU4                                                                             --------->ANAC55(2)                                                                             --------->ANAC46                                                                             --------->ANAC58                                                                             --------->bZIP60(1)                                                                             <---------bZIP60(1)                                                           --------->ANAC46  --------->ANAC58                                              <---------WOX13(1)             --------->O2      <---------LBD16                       --------->ATHB12             <-----------HVH21    --------->WRKY12                     <---------At4g35610 --------->ANAC46--------->ANAC55(1)    ----------->HVH21                  --------->ZAT18     --------->ANAC58  <---------ANAC55(2)  <----------DOF2                    --------->ZAT2        --------->ANAC58  ----------->GT1 ->AtSPL8     <------ZmHOX2a(1)      --------->At4g35610  ------->GAMYB  <-----------TGA1 --------->WOX13(1) --AtSPL8    --------->ICU4  --------->HSFB2a(2)        --------->ZAT14 --------->ANAC46<------ZmHOX2a(2) ->AtSPL3 ---------->DOF2    <---------HSFB2a(2)      --------->ANAC46  --------->bZIP60(2)   tcttctttgacggaaaggattagttcaaatactagaagtagctcgctgattgactcacaacacacaaaatatcaacgtcacgtaattaagatcaattact  25280700                                                                                            ---------                                                                                            <--------                                                                                      ------>MYB83                                  <------ZmHOX2a(2)                                   ------>MYB46(1)                                 --------->ARR11(3)              <---------ARR11(3)  --------->ANAC46                          <---------ICU4          --------->GLK1(2)          --------->ANAC58                         --------->ICU4     <-------TEIL   ----------->GT1   --------->ANAC58     ---                 ---------->DOF2 <---------ARR11(3)      ---------->DOF2    ------->TEIL--------->AtMYB61             <-----------GT1   <---------YAB1     ------->TEIL   --------->ARR11(3) --------->MYB46(3)   agttggatttgagtattaccaaagctactaattaagatcaaacacatacatgaatctgtaaaagtaaaatctaatacgaacccaaacccaccaaaatcta  25280800                                                                    ------>ZmHOX2a(2)                                        --------->GLK1(2)          <------ZmHOX2a(2)                                  ------>MYB46(1)                 <---------ARR14(2)                                  ------>MYB83                    --------->ARR14(2)                           --------->ANAC58                 ------>MYB46(1)                           --------->ANAC58                 ------>MYB83               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        -------->P             ------>MYB83  --------->ANAC46   <---------ETT(2)------->GAMYB   ------>MYB46(1)       --------->ZAT6 <---------ARR14(2)  --------->ANAC58   ------>MYB83--------->AtMYB61 --------->ANAC46           --------->ANAC58 --------->MYB46(3)--------->GLK1(2)--------->AtMYB61  --------->ANAC46 --------->AtMYB61 <---------ARR11(3)   --------->ARR14(2)--------->DEAR3(1)        <----------ID1 >GLK1(2)    ------>MYB46(1)    --------->MYB46(3)     --------->ANAC58           --------->YAB1 -ARR11(3) --------->MYB46(3)  --------->DEAR3(2)      --------->ANAC58<----------DOF2       -------- ------>ZAT6--------->ANAC46  ------->TEIL  --------->LBD16------>NtERF2          ----------->GT1----   acaccaactcaaacccaccaaaatctaacacgaacccaccaaaatccgtcgataaaaacgccaacccagatcgctatttcgctatggtgacaaaaaaaag  25280900                                                                    --------->REM1(1)                                                                  ------>ZmHOX2a(1)                                                             <---------ZAT2                                                            <---------ATERF1(1)                                                           <---------RAP2.3(3)                                                          <---------At4g35610          <-------------                                                          <------NtERF2            --------->HSFC1(2)                                                          --------->ATERF1(1)      <---------HSFB2a(1)                                                         <---------ATERF1(1)  <---------HSFB2a(2)                                                         <---------MYB46(3)   --------->HSFB2a(2)                                                        --------->ALFIN1  --------->ZAT2            <                                                        <---------DEAR3(1)<---------ZAT2-------------                                                        <---------RAP2.6(2)  <---------LBD16        -                                                      <---------ANAC58   ------>MYB83--------->GLK1(2)      ---------->DOF2                         ---------->DOF2<---------At4g35610   <---------HSFC1(2) -->DOF2          <----------ID1  <----------DOF2     <---------ANAC58   ------>MYB46(1)<------------ ------->GT1---------->DOF2      <---------DAG2--------->DAG2--------->At4g35610   --------->HSFB2a(1)   agtagaatcaaagaaaaagaagaacaaaaacttcacctttagggattgaaaagttagggtggctgctccttcaccaagctctggaagtttctgtttatag  25281000    --------->WOX13(1)  ==============HOX2a_HOX2a  <------ZmHOX2a(2) --------->AGP1                                --------->YAB1 ----AGL2                                      --------->AHL20(2) ---------At4g35610                      ------------------------>ANAC81>>>>>>>>>TBF1        *TSS   - -->AGL15                                ----------->GT1             <xxxxxxxxxxxxxxxxsmallRNA(i)---- -------->At4g35610             <---------ANAC58                  <------ZmHOX2a(2)       ---------->DOF2 ---AGL15------>ZmHOX2a(1)      <---------ANAC58           ---------->DOF2       <----------DOF2 >>>>   tcagatcaatcctttgaattcttcaactcttatggcttcagagaagtaataaaaaaaaaaaaaaagagatcgaagaagaagagcgtttgggagaaagaag  25281100                                      ---------->DOF2                               --------->ATHB51                               <---------ICU4                        --------->ANAC58                               <--------HAHB4                        --------->ANAC58                               --------->YAB1                        ----------->GT1---------->DOF2       ----------->GT1        --------->AHL20(2)                     --------->ANAC46               <      ----------->GT1         --------->ICU4             ------->GAMYB   ------------>CBF           -    ---------->DOF2     ---------->DOF2--------->DAG2  xxxxxxxxxxxxxxxxx>smallRNA(se3)              - --------->DOF2    ----------->GT1<---------AHL20(2)   ------>MYB83  --------->ANAC55(2)      ------- -------------------->ANAC81--------->YAB1             -------->P    <---------ANAC55(2)      ------- >>>>>TBF1    --------->AHL20(2)  --------->AHL20(2)   ------>MYB46(1)--------->LBD16      <---------CCA1(2)   aagaaagaaagataaaaaaaatggaataaagaataattaaaaaagtgtaatagggccaaccctattttagcccgtaacaatttaagtatagccctatctt  25281200                                                             --------->YAB1                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                  <---------RAP2.6(2)                                                  --------->RAP2.6(2)                                                  --------->DEAR3(1)          <---------AHL20(2)                      <---------DEAR3(1)          --------->AHL20(2)                      <---------ATERF1(2)                         <------     <---------ARR11(3)                           --------->ATERF1(2)                         -------     --------->ARR11(3)       <---------ARR11(3) --------->SPL7                               ------- ---------MYB59 <---------TOE1(3)       ------->GAMYB       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->TOE1(3)             --------->ARR11(3) --------->DEAR3(2)                           <------ -------->TOE2(3)<---------ZAT6      <-----------GT1<------NtERF2                  --------------->AGL15 -->TOE2(3)     <---------TOE2(3)<----------DOF2 --------->ATERF1(1)             --------->TOE2(3) -- -->YAB1<----------DOF2      <---------CCA1(2)   --------->RAP2.6(3)       <-----------GT1  <------ZmHOX2a(1)   aacctaaaatcttttattagggttagggcttatatcttttaacagactcgggccggccctaaattataagcccatattaacatccctaattagaggagct  25281300                                                      <------NtERF2                                                      --------->At5g28300                                                     <---------MYB46(3)                                                    <---------DEAR3(1)                                                   <---------ABI4(1)                                                   --------->ATERF1(1)                                                   <------NtERF2                                                  ------>NtERF2                                                 <---------DEAR3(1)                                                 --------->ALFIN1               <---------YAB1        <---------YAB1                        <---------DEAR3(1)                --------->ICU4 ---GLK1(1)                               --------->HSFB2a(2)                   <---------MYB52(1) -->At4g35610                             <---------HSFB2a(2)              --------->bZIP60(1) -->GLK1(1)                               <-----------RAV1(2) ------->TEIL --------->O2    ---------- ---At4g35610                     --------->ARR14(2)<---------ANAC46       <---------bZIP60(1) ---->ZmHOX2a(1)                  <---------ARR14(2)<---------DREB2C(2)    <---------O2  ---------->DOF2   ccttcgaggtatgattcagacggagattgagaccacgatttgctccagacggtggcggtgaatgaatcggtagaacgacgtcgttattgtcaaaagtaaa  25281400                                                                                    --------->At4g35610                                                                                    <---------At4g35610                        --------->At4g35610                              --------->DEAR3(1)                        --------->ZAT2                                  --------->ANAC58                        ----------->RAV1(2)                             --------->ANAC58                        <---------At4g35610                             --------->ANAC46    ---------                        <---------ZAT2                                <---------ALFIN1<----------DOF2 ->GT1     --------->AHL20(2)               ---------->DOF2          --------->MYB46(3) --------->ATHB12   accctagagaccaaaaaataaacttaagctgggcctgtttatcccataaagaacatttatgtgttattgcatccacggccctcttcagcttgatgggtta  25281500                                                <---------ANAC58                                                <---------ANAC58                                 <---------ANAC58                                             <------                                 <---------ANAC46                                             <------                                 <---------ANAC58       <---------YAB1           <---------ANAC58                     <---------ANAC58     <---------ANAC58                       <---------ANAC58 -->GT1 <-------TEIL <---------ANAC58     <---------ANAC58    <-----------GT1  <---------WRKY18(1)   taagcccaaatacatgtcccaatgcttgaattgttgtgtgtttagcgtttgcttagttatttttaaactatgccaaacgcttgacttgttgtctgtgcgt  25281600  Previous    Next  AGI:  At5g62950.1    Description:  catalytic/ nucleotide binding. similar to catalytic/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G28956.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42808.1); contains InterPro domain HRDC-like; (InterPro:IPR010997); contains InterPro domain RNA polymerase II, Rpb4, core (InterPro:IPR006590) Range:  from: 25279451    to: 25281093    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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