Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ATHB12                                                            <---------AHL20(2)                                                           <---------AHL20(2)                                                           <---------AHL20(1)                                   <----------DOF2         --------->AHL20(2)        <---------AHL20(2)      ---------->ID1             --------->AHL20(1)       <-------GAMYB --------YAB1              --------->TOE2(3)    <---------ALFIN1                ------------>MYB.PH3(2) --------ANAC46           <---------HSFB2a(1)  <---------ZAT18    <-----------RAV1(1)            ---- -----RAV1(1)            ------->TEIL          --------->ZAT18   <---------TOE2(3) --------->MYB52(2)   tgtgtttgttttaattctctgtttaagaacctttgtacttttgtagtagcccactcttgaatttattgatgttgttgttttgagttagttgtataatcca  25237000                        <------MYB83                       --------->MYB59                     <---------ARR14(2)                     --------->ARR14(2)                     <---------MYB52(1)                                                      --------                  --------->LBD16                                                          <------ZmHOX2a(1)                <-----------------AGL1          --------->YAB1                  <---------YAB1    <--            <------MYB46(1)                    <---------AHL20(2)          --------->ANAC58==========           <---------AtMYB61<---------------AtSPL8 ---------->DOF2         --------->ANAC58==========           --------->MYB59<---------MYB52(1)  --------->AHL20(2)     <-------TEIL       <---------LBD16  <----------DOF2<---------LBD16         <------ZmHOX2a(1)       <---------TOE2(3)      <-----------RAV1(2) ------>DOF2<------MYB83<------MYB46(1)<---------TOE1(2)  <---------At4g35610 <-----------GT1========   aaagctttctggtttggttcccggttcggttttgtacatagtaggatttttaataaagcctgctaatgaggttcagcaagttaccattgctcaggaaact  25237100           ------>ZmHOX2a(1)         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       --------->ARR14(2)       <---------ARR14(2)       --------->ARR14(3)       <---------ARR11(3)       --------->ARR11(3)       <---------ARR14(3)                            <------ZmHOX2a(2)      <------ZmHOX2a(1)                       <---------HSFB2a(2) ---->MYB.PH3(1)--------->O2           ----------------->AGL1 -------MYB52(1)--------->TGA1a   --------------->AtSPL3 ==============HOX2a_HOX2a     <---------GLK1(1)   <------ZmHOX2a(1)   --------->YAB1 ===============HOX2a_HOX2a <---------TOE2(3) --------->HSFB2a(2)--------->ANAC58 =========================MYC_MYB --------------->AtSPL8         --------->ANAC58          --------->TOE2(3)   gttatggaggatcctccaacgtctctgtttaagaattcagtaccaattcgagaggatcaaattcagaacgctatcacaaattccattcgctaatcttaga  25237200                                                                              --------->ANAC58                                                                              --------->ANAC58                 <---------ATHB51                                    --------->YAB1                 --------->ICU4                                    --------->AHL20(2)            <---------HSFB2a(2)                                 <---------AHL20(2)                <--            --------->HSFB2a(2)        <---------ANAC58         --------->AHL20(1)                <--           <---------LBD16     <------MYB83  --------->AtLEC2   <---------AHL20(1)               ----          xxxxxxxxxxxxxxxx>smallRNA(i) <---------ANAC58         --------->AHL20(2)             ------         --------->GLK1(2)     <------MYB46(1)                 <---------ATHB12             ---------   attgggcataaattctggaataatgggctcatttggtattagcgtccatacacattgtaggcccaataaaataatagaccaagaaaaaactaaaaaccgg  25237300      <---------MYB52(1)       <---------ALFIN1      --------->DOF5.7(2)    --------->AtMYB61     <-------GAMYB           <---------ALFIN1  ------->GAMYB              ----------->RAV1(1)                                                  <-- --------->ANAC46           --------->ANAC46            --------->SPL7    ------>MYB83            --- --------->DEAR3(1)       --------->AtMYB61           <---------SPL7      xxxxxxxxxxxxxxxxx>smallRNA(si3) -------WRKY12           --------->MYB46(3)        <---------At5g28300   ----------->RAV1(1)      <-- -------WRKY38(1)     ----------->HVH21          <---------MYB55(2)      *TSS                     --- ----->SPL7       <---------ANAC58         --------->ANAC46  ---------->DOF2                 <------ZmHOX2a(1) --->LBD16        <---------ANAC46      <-------TEIL--------------->AtSPL8------>MYB46(1)   <-------- >MYB52(1)        <---------ANAC58  <-------TEIL --------->MYB46(3)     --------->AtMYB61---------->DOF2   acaacgccgttatctcttcttcgtgtgaccaccacacatacatacataccactcaccgtaccaaaaagattagaccaacaaaaaaaaaaaaaaaaggacc  25237400   <---------At4g35610                                         <-----------GT1   --------->At4g35610                                       <---------WOX13(1) <-----------RAV1(2)                                      <---------YAB1               <---------YAB1 -------ZAT2                                          --------->ARR14(2)             --------->YAB1 ------>ZAT2                                          <---------ARR14(2)        --------->At4g35610 -------At4g35610                                    <---------GLK1(1)    ------>ZmHOX2a(1) ------>At4g35610                       --------->TOE2(3) ------>ZmHOX2a(1)   <---------ICU4      --- --ID1                       <-----------GT1         --------->GLK1(1)   --------->TOE2(3)       <---   agctcagatgagtctggagtttccaagtttaaaacctctctacctcgatttgagcaaatcctgatttactctcatcctcatcatctctcatcatcgagat  25237500                                       --------->At4g35610                                       --------->ZAT2                                       <---------ZAT2                                       <---------At4g35610                                     <---------ZAT14                             <---------TOE2(3)                            ------>ZmHOX2a(1)                             <---------TOE1(2)                       --------->MYB46(3)                             <---------TOE2(2)                     <xxxxxxxxxxxxxxxxsmallRNA(s)                      --------->HSFC1(2)                        --------->ANAC58                      <---------HSFB2a(1)                       --------->ANAC58    <<<<<<<<<<E2Fc                      <---------HSFC1(2)                        --------->ANAC46    <<<<<<<<<<E2Fe                    <---------GLK1(2)--------->ZAT18          --------->MYB52(1)    <<<<<<<<<<E2Fa               <---------ANAC46   --------->MYB52(2)       --------->At4g35610      <<<<<<<<<<E2Fd       <----------DOF2--------->HSFB2a(1)                  <---------At4g35610    <-----------GT1 ------>YAB1  ------>NtERF2  <---------TOE1(3)          --------->At4g35610    <---------GLK1(2) ----TEIL   <---------RAP2.6(2) <--------P         <---------At4g35610------->GAMYB<-----------GT1 --   tcatagtctcttttgccgcttggattcttccaaggttagtgagctgctatggcaactcatcagcaaacgcaacctccttccgattttcccgctcttgccg  25237600                                          --------->ATHB51                <---------TOE1(2)         <---------ICU4                --------->LBD16          --------->ICU4            --------->GLK1(2)          <--------HAHB4           <---------GLK1(2)           --------->YAB1                           --------->GLK1(2)           <---------ARR14(2)          <---------ICU4                          --------->ARR14(2)           --------->ARR14(2)         <---------YAB1                    --------->AtLEC2         <---------TOE1(2)  <-----------GT1    --------->TOE2(3)  <---------ARR14(2)       <---------LBD16    <-----------GT1<---------YAB1      <---------ANAC46  <---------ARR14(2)   --------->KAN4(2)<-------TEIL      --------->ICU4        <---------AtMYB61  <---------GLK1(2) ------->YAB1  <-----------RAV1(2)    <---------ATHB12    <----------DOF2    ----------->ARR10-------   atgaaaattcccagattccaggttcaatttacaccttctaatcattatttcttaatttttctttggtggattccatgaacagattctcagtatttcgcct  25237700                                                    ------->TEIL                                                 <---------YAB1                                               <---------ICU4                                               -------->HAHB4                                               --------->YAB1                                              --------->ICU4                                             <---------TOE2(3)                                            --------->YAB1                                        <--------HAHB4                                             --                                       <---------YAB1                     ------>MYB46(1)     <------                            <---------YAB1<---------YAB1                  ------>MYB83     --------->ICU4                            <---------AHL20(2)<---------ATHB12          <---------MYB59  ---------->DOF2 ---->RAV1(2)          <------ZmHOX2a(1)--------->YAB1            --------->AtMYB61 --------->TOE1(2)   ggtgatgaactactgcgattgcataggatttttattgaactattattaatgatgaatgttcaattacaccaataccaaattttaaacctagaaaagattg  25237800                                                                       --------->ATHB12                       --------->AHL20(2)                              --------->ATHB51              --------->ARR11(3)                                <---------TOE2(3)              <---------ARR11(3)--------->ARR11(3)         --------------->AGL15 ------>ZmHOX2a(1)     <---------AHL20(2)              <---------GLK1(1)        ------->TEIL ======================HOX2a_HOX2a                     --------->GLK1(1)     <---------YAB1 ---->ZmHOX2a(2)------>ZmHOX2a(2)     ----------->GT1<------ZmHOX2a(1)<---------YAB1   <---------MYB46(3) ---WOX13(1)<---------YAB1    <---------YAB1       <---------TOE1(2)  --------->ICU4   --------->MYB52(2)   atccttatgaagttatgatctatatttatttgatgatatagagtaatacatagtaggatttctactaatgttattattgatgaatgtgtttgttacagag  25237900  Previous    Next  AGI:  At5g62800.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINA-like 11 [Arabidopsis Thaliana] (GB:Q9FM14); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT5G37890.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); similar to SIAH1 protein [Brassica napus] (GB:CAC80703.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 25235889    to: 25237193    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g62810.1    Description:  PEX14 (PEROXISOME DEFECTIVE 2). similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT5G62800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67215.1); contains InterPro domain Peroxisome membrane anchor protein Pex14p, N-terminal; (InterPro:IPR006785) Range:  from: 25237373    to: 25241015    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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