Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <-----------GT1                                     <---------WOX13(1)     <----------DOF2                                   --------->ATHB12      <-----------GT1                                 <---------WOX13(1)      <---------AHL20(2)               --------->DAG2                               <------ZmHOX2a(1)     --------->AHL20(2)                  ---------->DOF2                         <----------DOF2             <---------AHL20(2)               <------ZmHOX2a(1) >ZAT14      ----------->RAV1(1) xxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------TOE2(3) -ZAT14    --------->LBD16   <---------TOE2(3)      --------->AHL20(2)           <----------DOF2    -   gaaatacaaattccccaacatgcctagctttgaggattgattgtttctaagctatttattttctttaccaattcacataaatactttaggataaagtgga  25201200                                                                      <---------MYB52(1)                                                             <---------ZAT18                            <---------MYB52(1)             ------->MYC2                            <----------DOF2    <---------YAB1--------->ZAT18                 ------->MYC3           --------->YAB1     <-------MYC2            <-----------GT1                 <-------MYC3         --------->ANAC58     ------->MYC3    <---------AHL20(2)                 ------->MYC2         --------->ANAC58     ------->MYC4--------->ATHB51 ---------->GT1  <-------MYC2         --------->ANAC46     <-------MYC3<---------ICU4         <------   aattgtcaatattcaaacacgttctcttccctttgttaacaagcaaaatatgaaaataacatgtgctcttccattatttcattttttgcaacccttatga  25201300                         <---------ZAT14                         --------->ZAT18                         <---------ZAT18                         --------->ZAT14                       ------->MYC2                                                           <------                       ------->MYC4                                                           -------                       <-------MYC3                                                           <------                       <-------MYC2                                       --------------->AGL15              ----------->RAV1(1)                                         <---------------AGL15<-----         =================RAV                                             <----------DOF2     -------     ---------->DOF2   ------->MYC3                                   --------->KAN4(2)      -------- <---------PCF2 <---------MYB52(2)        <---------GLK1(2)          <---------KAN4(1)      <-------- ---YAB1 ----------->RAV1(2)          ---------->DOF2               ------->TEIL <-----------GT1-----   atgggcccaaagcctgccacaaacatgtgcacaatattagaaaagaaactctaaaaacaaaaacaaaatgaacattcttttttttgcaatttgtattata  25201400          <---------AHL20(1)          <---------AHL20(2)     --------->AHL20(2) --------->YAB1                         <---------AHL20(2) ---AHL20(2)              <---------AHL20(2) -->AHL20(1)             --------->AHL20(1)   <---------AHL20(2) ---AHL20(1)             <---------AHL20(1)  <---------AHL20(2) ----YAB1 --------->AHL20(2)            --------->AHL20(1)                       --------->MYB52(1) -->AHL20(2) <---------AHL20(2)         --------->AHL20(2)                      --------->ARR11(1) ->YAB1--------->YAB1    --------->AHL20(2)  --------->AHL20(2)             ---------->DOF2    <----- -YAB1 --------->AHL20(2)<---------AHL20(2)  --------->AHL20(1)      --------->TOE2(3)        ------- ---->YAB1--------->AHL20(1)<---------YAB1   <---------AHL20(1)     <---------YAB1            <------   atatcaaaataatattttaaaactcaatttaatattggaaaataaaataaaatttggaaactaaacagttaccatagagaaagaaacggaccatttttaa  25201500                                   <---------YAB1                           <---------RAP2.3(1)                           --------->ABI4(2)                          <---------DEAR3(1)                          --------->DEAR3(1)                         --------->ATERF1(1)                         --------->RAP2.3(1)                        <---------ATERF1(1)       ----------->GT1                        <---------RAP2.3(1)      <---------------------WRI1         <---------HSFB2a(2)<------NtERF2   <------------CBF         --------->HSFC1(1)<---------ATERF1(1)  <---------ANAC46                     --------->YAB1         --------->HSFB2a(2)--------->ATERF1(1)<---------LBD16                      <---------ATHB12         <---------HSFC1(1)------>NtERF2   --------->ATHB12                         --------->ICU4 ----AHL20(2)          <---------DEAR3(1) --------->ICU4                            <---------ATHB51 -->AHL20(2)         <---------ARR14(2)   <---------YAB1------------------------>ANAC81 --------->YAB1 ---AHL20(2)         --------->ARR14(2)<---------ZAT6   <----------ID1          ------------>CBF   attttgaatttcgagaaaaacaaaatcggcgcctcttattagagataattgggggaaaaaaacaaaaaacaaacacagagagagcaataataaaaactca  25201600                                                                      --------->LBD16                                                                     --------->LBD16                                                                    <---------HSFB2a(2)    <---------CCA1(2)                                                           --------->GLK1(1)              ---------->DOF2                                                          <---------GLK1(2)             --------->At5g28300            <-----------GT1                   <----------DOF2       --------->HSFB2a(2)----------->GT1        <----------DOF2              ---------->DOF2      --------->ARR14(2)           --------->TOE1(3)        <---------DAG2 *TSS        --------->TOE2(3)      <---------ARR14(2)           --------->TOE2(3)   ctcactctcacttttttcatttcttcaacaaaaaaaacctaaagctctcttttctctccagatttcgattcccgaggctcgagagaaaaccgtaaatctc  25201700                   ---------->DOF2                  ------->GAMYB                 --------->MYB46(3)                -------->P<---------ANAC58           <---------WRKY38(1)                            -               --------->WOX13(1)--------->GLK1(2)   <---------WRKY12              --------->HSFB2a(2)             <---------ATHB12   <---------GLK1(2)    <---------WRKY45              <---------HSFB2a(2)           --------->WOX13(1) ----------->ARR10     --------->WRKY18(1)           <---------LBD16  --        --------->ANAC46  <---------ANAC55(2)     <---------MYB46(3)            --------->ARR14(2) <-        --------->ANAC58  --------->ANAC55(2)     <------MYB46(1)         ------>NtERF2            <-        --------->ANAC58  <---------ANAC58        <------MYB83        ------>ZmHOX2a(2)           <--     --------->ZAT14      <---------ANAC46       <---------AtMYB61   <------ZmHOX2a(2)       <-------     <---------ZAT18      <---------ANAC55(1)    --------->ALFIN1   --------->ARR14(2)       <-------     <---------ZAT14     <-------TEIL        --------->LBD16        <---------ARR14(2)     <---------MYB46(3)    <---------MYB52(1)   <-----------------------TaNAC69(2) --------->At5g28300 <---------ARR14(2)---   ttctccgttcactcaatcaaccaaagatgcgtgagattcttcacatccagggtggtcaatgcggtaaccagatcggagccaagttctgggaagtggtttg  25201800                                                                                                   <-                                                                                                   <-      --------->ANAC58                       --------->CCA1(2)                                    <--      --------->ANAC46                       <------ZmHOX2a(2)                                   ----      --------->ANAC58                      --------->ARR14(2)                                  <----   --------->ZAT2             <---------ALFIN1------>ZmHOX2a(2)                                 -----   <---------ZAT2         <------MYB46(1)   --------->ARR11(3)                                  <---- ------>NtERF2         <---------MYB52(1)   <---------ARR14(2)                               <------- -------->DEAR3(1)    --------->LBD16       --------->AGP1                                  --------- ------->ATERF1(1)   ------->GAMYB          <---------AGP1                                <---------ANAC58 ---------CDC5     -------->P<-------TEIL   <---------ARR11(3)      --------->DOF5.7(2)   <---------ANAC46 -----NtERF2       ------>MYB83     --------->ARR14(2)             --------->TOE2(3)      <---------ANAC58 -------RAP2.3(1)  ------>MYB46(1)--------->LBD16        <---------At4g35610             <---------LBD16 --ANAC58          --------->MYB52(1)      <---------CCA1(2)     <---------TOE2(3)    <---------ZAT2 --ANAC58      <------ZmHOX2a(2)<---------LBD16     --------------------->WRI1 ---------->DOF2  ----- --->NtERF2<------NtERF2  <------MYB83    ----------->ARR10--------->ZAT18    <---------ATHB12-------   cgccgagcacggcatcgatccaaccggaaggtacaccggagactcagatctgcaacttgagcgcatcaacgtttactacaatgaagcgagttgcggtaga  25201900                                                                --------->SPL1(2)                                                                --------->SPL7                                                               --------->SPL1(1)                                                               <---------SPL1(1)         --------->ZAT18                                      <---------SPL1(2)         --------->ZAT14                                      <---------SPL7         <---------ZAT14                                    <---------------AtSPL3       <-------PIF5                                         --------------->AtSPL3       ------->PIF5                                        <------------------SPL14 --------ANAC58                                        ------>ZmHOX2a(2) --------ANAC58                                       <------ZmHOX2a(2) -----TEIL                                            --------->CCA1(2) ----->ARR14(1)                                      --------->ARR14(2) -----GLK1(2)                                        <---------ARR11(3) ---->ARR11(1)                                       --------->ARR11(3) -----ARR14(2)        <---------ARR14(2)             --------->AGP1 -P  ------>ZmHOX2a(1)--------->ARR14(2)<---------TOE2(3) ------------------>SPL14 >At5g28300   --------->ZAT14  --------->TOE1(2)     <---------ARR14(2) ---->ARR14(2)<---------ZAT18 --------->ATERF1(1)    <---------AGP1<-----------HVH21 ---->ARR10   <---------ZAT14 ----------->RAV1(2)   <---------CCA1(2)   --------->ARR11(3)      <----   ttcgttcctcgtgcagtgctcatggatttggagcctgggactatggatagtctcagatctggaccgtacggtcagacctttcgacctgataacttcgtct  25202000                   --------->MYB46(3)              ----------->GT1             --------->LBD16            <---------ANAC46            <---------ANAC58            <---------ANAC58           <---------LBD16          --------->ALFIN1         <---------MYB52(1)                       <---------At4g35610        --------->LBD16                           --------->At4g35610      <---------LBD16                     XXXXXXXXXXXXXXXXXXXXX>MIR840                      <--------    --------->ARR14(2)                 <---------REM1(2)                                    ---------    <---------ARR14(2)                 <---------ZAT14                  --------->HSFB2a(2) ---------   --------->WOX13(1)                  --------->ZAT14                  <---------HSFB2a(2) <--------  <---------WRKY38(1)              --------->ZAT6 --------->ZAT2     <---------MYB52(1)  <------ZmHOX2a(1) --------->WRKY18(1) ----------->RAV1(2)  --------->ANAC46         <---------ANAC58    --------->ANAC58 ------DOF2--------->ABI4(2) --------->MYB52(1) <------ZmHOX2a(1)  <---------ANAC58    --------->ANAC58   ttggtcaatccggtgcgggtaacaactgggccaagggacactacactgaaggagctgaactaatcgattccgttctcgatgttgttcgtaaggaagctga  25202100  Previous    Next  AGI:  At5g62700.1    Description:  TUB3 (TUBULIN BETA-3); structural molecule. Identical to Tubulin beta-2/beta-3 chain (TUBB3) [Arabidopsis Thaliana] (GB:P29512); similar to TUB7 (tubulin beta-7 chain) [Arabidopsis thaliana] (TAIR:AT2G29550.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB8 (tubulin beta-8) [Arabidopsis thaliana] (TAIR:AT5G23860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62796.1); similar to beta tubulin 8 [Hordeum vulgare subsp. vulgare] (GB:CAM58986.1); similar to beta-tubulin [Eucalyptus grandis] (GB:ABS50666.1); contains InterPro domain Beta tubulin, autoregulation bindi Range:  from: 25201623    to: 25203937    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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