Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ----------->GT1                                                                           --------------->AtSPL8                                                                           <---------------AtSPL8                                                                     --------->YAB1                                                                    ----------->GT1                                                                  -------->HAHB4                                                                  <---------ICU4                                             --------->AHL20(2)   --------->YAB1           ------>ZmHOX2a(1)              ----------->GT1        <---------ATHB51     <---------ARR11(3)                 --------->ICU4           --------->ICU4     --------->ARR11(3)    --------->MYB52(1)<---------AHL20(2)  <---------ATHB12 ---------->DOF2 <---------ICU4    --------->YAB1              --------->YAB1                       < -------DOF2    <---------ATHB12   ----------->GT1--------->ARR11(3)<---------YAB1       ---------->DOF2   ttttaaagacctcctctaatcaattcgactaatggaatagtaattagttaaatatcaagggaaactaataatgaaaattggtacaaaaaaaaaaagagat  25120800                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                         --------->TOE1(2)                                                                                         ------->GAMYB                                                                                        --------->MYB46(3)                                                                                       -------->P                                                                                      --------->WOX13(1)      <---------YAB1                               --------->YAB1                   <------ZmHOX2a(2)    <---------ICU4                      ----------->GT1                        --------->LBD16   <---------YAB1                  <---------AHL20(2)                          <---------LBD16   --------->ICU4                 <---------AHL20(2)       <---------ZAT6     <---------LBD16 --------->YAB1         <----------DOF2----------->GT1 <---------YAB1      <---------ARR14(2) ---------YAB1     <-----------GT1--------->AHL20(2) <---------ZAT6        --------->ARR14(2)   ttatgattattatctactgttttactcttttgaaatttaaattggaaaatcaatagtattagtgatatttgacatcaaatccagggatcaaccaaggaat  25120900                                                                                          <---------SPL7                                                                                         --------->ANAC58                                                                                         --------->O2                                                                                         <---------ANAC55(2)                                                                                         <---------O2                                                                                         --------->bZIP60(2)                                             <---------YAB1                              <---------TGA1a                                         <---------ARR11(3)     --------->AHL20(2)       --------->TGA1a                                         --------->ARR11(3)     <---------AHL20(2)       --------->ANAC58                    --------->WOX13(1) <---------AHL20(2)  --------->ICU4       <---------ZAT2              <---------At4g35610     --------->AHL20(2)  --------->ANAC55(2)   <---------At4g35610              --------->At4g35610>>>>>>>>>GATA-1   >>>>>>>>>GATA-1           <---------ANAC58       >    --------->At4g35610        ----------->GT1  <---------WOX13(1)     <---------YAB1<-----------HVH21    <---------At4g35610--------->YAB1 <---------AHL20(2)  <---------ANAC55(2)<---------ANAC58 <------NtERF2   tttgtaagatgaacacagatgtcaattacaaaatagataaataaatcttgatagataaataagtattaaaatggtgatagcttgctgagtcacgtccgct  25121000                                                          --------->AHL20(2)                                                   ----------->RAV1(1)                                                  <---------ETT(1)                                                  --------->DREB2C(2)     <---------AHL20(2)                                                 --------->DEAR3(2)       --------->AHL20(2)---------                                                 --------->MYB46(3)  --------->AHL20(1)     <--------                                                ------->TEIL        --------->AHL20(2)    --------->YAB1                                             --------->ANAC58  --------->AHL20(1)     <---------YAB1<                                      <----------DOF2    --------->AHL20(2)<---------YAB1 --------->AHL20(2)                                    ---------->ID1--------->DEAR3(1)--------->YAB1   --------->AHL20(2)                                <---------MYB52(1)<----------ID1 --------->YAB1----------->GT1      x                           --------->ARR14(2)--------->ANAC58  --------->AHL20(2)    <---------AHL20(2) >>>>>>>>>>>>>>>>LFY       <---------ARR14(2)--------->ANAC46 --------->YAB1 <------------CBF -------   tgggccattggcccattgagtaatagacgtatacgtttgtcttttacacgaaccgacaaataaaaaataataatattaaaattgtattaaaattataaaa  25121100                                                                     --------->AHL20(2)                                                                   ==================================     ---------->ID1     --------->AHL20(2)                         --------------->AGL15    <-----------GT1     ----------->TBP                     *TSS   <---------------AGL15 -->TBP                <---------AHL20(1)                  <---------AHL20(2) -YAB1                 --------->AHL20(1)                  <---------AHL20(1)                      <- ----------DOF2       --------->AHL20(2)   <---------HSFB2a(2)    --------->TOE2(3)             <---- xxxxxxxxxxxxxxx>smallRNA(i)               --------->HSFB2a(2)  <---------AHL20(2)     <-----------GT1 --->DOF2 <----------DOF2 <---------AHL20(2)               --------->AHL20(2)   <---------YAB1 <-----   gtcttttttcgtctttggaagaaaatatatatatgtttttttcttctggcaagttttgtattttattttcttaaaatagtatatgattttttcattttaa  25121200                           <---------MYB52(1)                          <---------------AGL15                          --------------->AGL15                          <----------DOF2  --------->DAG2   <----------DOF2       <-----------------AGL2                    <---------GLK1(2)  <------------------------ANAC81<------MYB46(1)       --------->ARR11(3)                           < =========================================MADS_MADS    <---------ARR11(3)                       <---- ---------DOF2           --------->TOE2(3)---------->DOF2--------->TOE2(3)                <---------DAG2 -------GT1              <-----------------AGL3  ----------->GT1 <---------YAB1           <----------DOF2 ------GT1     <<<<<<<<<TBF1     <------MYB83  ---------->DOF2 <----------DOF2         <-----------GT1   actttctttgtgttttcttcttctcttcctttatttggtgaagaaaaaggaaagaaaaatctcaactttgattctctctccctctatatatactttattt  25121300                                                                                 <----------DOF2          --------->YAB1                                                         <---------DAG2         <---------YAB1                                                       <-----------GT1 <------       --------->YAB1      <----------DOF2                          <-----------RAV1(1)     <--------      <---------ATHB12 <---------CCA1(2)                            <---------ZAT6   --------->ATHB12   <---------ALFIN1  <---------ICU4                     --------->TOE1(3)<---------ANAC58   --------- -----------GT1   --------->YAB1            --------->ATHB12     ------>ZmHOX2a(1)  <---------YAB1 -----AHL20(2)   <-------TEIL         --------->YAB1    --------->TOE2(3)<---------ANAC58   <--------   attctccactcataatagtttcatcatctctttcggtctatgaaaaacattggaaaaaccctaattcctagtgttgcgaatcacttttcattgcagcttt  25121400                                                            --------->ARR11(3)     ----------->GT1                                    <------ZmHOX2a(2)     --------->ANAC55(2)   <----------DOF2             <---------ARR11(3)   <-----------RAV1(2)     <---------DAG2              --------->ARR11(3) ----DOF2      ----------->GT1                <---------bZIP60(1)                                  <- -At4g35610   <---------TOE1(3)               --------->bZIP60(1) --------->YAB1                 <--- >At4g35610   --------->MYB59              ----------->HVH21<---------ARR11(1)             ------>ZmHOX2a(1) -ZAT2        <---------TOE2(3)          <---------AtLEC2  <---------CCA1(2)             --------->YAB1   gaacttcaggtaattttaggttaatcgagctttttcatttgatgcatgacatcggaagatcaaatctttcataggtgattgtataatctaatcctaaggc  25121500           <---------ICU4                                                  <---------MYB52(1)          <---------ATHB51                                              <---------YAB1       ----------->GT1                                       --------->ANAC46 <---------ANAC46 ------GAMYB              ------>ZmHOX2a(2) --------->AHL20(2)   <---------At4g35610 ----TEIL <---------YAB1<---------ARR11(3)  <---------AHL20(2)   <---------ZAT2   tcgttgaaatcgataattgtactcttgatctacttaaattcagaatttaaattcagaatttatacacagctactatcgttgagtcgaacttaatttgcta  25121600                                       <------MYB83                                       <------MYB46(1)                                       ----------->GT1                                      --------->MYB111(2)                      <---------REM1(1)                              --------->HSFB2a(2)                            <-------GAMYB                              <---------HSFB2a(2)                           <---------MYB46(3)                              <---------HSFC1(1)                    <----------DOF2                        <---------ANAC58               ----------->HVH21    --------->MYB55(2)                        <---------ANAC58    <---------YAB1  <----------DOF2 --------->MYB111(2)                     <----------DOF2  --------->MYB46(2)   <---------DAG2  <--------P       <--------   gttgaaataatccaagcttcaagctttcttgtctagaagtttggtgattcttgttctctgaccttttgggctatatggttgttgaagcttaagtctttgt  25121700  Previous    Next  AGI:  At5g62540.1    Description:  UBC3 (UBIQUITIN-CONJUGATING ENZYME 3); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-17 kDa 3 (UBC3) [Arabidopsis Thaliana] (GB:P42746); similar to ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G02760.1); similar to ubiquitin carrier protein [Populus tomentosa] (GB:AAV84587.1); similar to Os03g0791800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051522.1); similar to ubiquitin conjugating protein [Avicennia marina] (GB:AAF73016.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating e Range:  from: 25121160    to: 25122845    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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