Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------>ZmHOX2a(2)                                <---------GLK1(1)                                <---------At4g35610                               --------->ARR11(3)                               <---------AGP1                               --------->ARR14(2)                               <---------ARR14(2)                               <---------ARR11(3)                               <-----------ARR10                              <---------CCA1(2)                             ----------->ARR10                          <---------ANAC46                          <---------ANAC58                          <---------ANAC58                       <---------MYB52(1)   ------->TEIL                               --------->YAB1                  --------->ARR14(2)       <---------AtLEC2            --------->MYB46(3)                  <---------ARR14(2)     --------->AtLEC2       <-------TEIL           --------->ATHB12                 --------->GLK1(1)   ------>NtERF2              --------->ZAT18       <---------ATHB12 -------At4g35610<---------GLK1(1)  --------->ANAC46    <---------ARR11(3) --------->YAB1     -------   tgctccctcgacgatatcgatatccgttgtgtggatctgcgccatgcatgtcgaacatgatatatgtgcattaacaaacatagcaccattcattagtcat  25073100                                    <---------At4g35610                                ----------->HVH21                    <---------AHL20(2)                   --------->AHL20(2)              ------->TEIL  <---------ANAC58      --------->ANAC58      <---------ANAC58                --------->TOE2(2)                   -----      --------->ANAC58    <---------ANAC46--------->ALFIN1 <---------------AGL15   <---------------AtSPL8      --------->ANAC46  <-----------RAV1(1)    --------->GLK1(1)                <---------AHL20(2) -->YAB1  <---------KAN4(2)<---------MYB46(3)  <---------GLK1(1)               --------->AHL20(2)   attcaaacaaggaatgaaccattaatttgtgggtgtgaagcagagtgggatatcgttgttaacatatgaagtatacatgtataaaattgtacagaatgta  25073200                                    <---------HSFB2a(2)                                    --------->HSFB2a(2)          <---------ALFIN1                               <---------HSFB2a(1)             --------->ANAC46                               <------MYB46(1)            <----------DOF2                          --------->ALFIN1                <---------DAG2                        <---------ANAC58              --------->ZAT14                        <---------ANAC46              <---------ZAT14                        --------->ALFIN1              <---------ZAT18                        <---------ANAC58         ---------->DOF2<---------At4g35610                 <---------YAB1--------->HSFB2a(1)    --------->ZAT18 -->TEIL    --------->HSFB2a(1)<------MYB83    <---------HSFB2a(2)  <---------ANAC46   tttgataccatcaaaccttctgaatggtgtggaaggtttcagaactgttcccaaagttcactttcccgctccttgtgttcccaaatcgaaatgcccttgt  25073300                                                                    <<<<<<<<<TBF1                                                           <-------TEIL                                                          --------->ARR14(1)                         <---------ARR11(3)              <---------ARR14(2)                         --------->ARR11(3)              <---------GLK1(2)                        --------->YAB1                   --------->ARR11(1)                      ----                     <---------ICU4                      --------->ARR14(2)                    ------                    ------>ZmHOX2a(1)                  ----------->ARR10                       <-----   tttcaaaatcccaaatcgactcctaattatcttcaactaaaaaaccaaaattgacttcagattcgccttcttcttctcttgcaacgtttcaatttcatgt  25073400                                                                                          <---------ANAC46                                                                                        *TSS  <------                                                                                      --------->At4g35610                                                                                     <-----------RAV1(1)                                                                                    <-------MYC3                                                                                    <-------MYC2                                                                                    ------->MYC3                                                                                    ------->MYC2      --------->TOE2(3)                      <------------CBF<---------DAG2        <----------TaMYB80 --->TEIL                                  <---------YAB1    <----------DOF2      ---------->TaMYB80 ->MYC3                             --------->LBD16      ---------->ID1       ---------->ID1  ------- --MYC3       ------------>CBF    <---------LBD16 <---------At4g35610       <-----------RAV1(1)   gccttcgaccttagattccaattttgaattcgaatttctggggtttcgattgagctcttctcgcttttttctagggttttgtcgcatatgctgcgagtgt  25073500                                                                                      --------->MYB55(2)                                                                                      <---------MYB46(3)                                                                                      --------->ABI4(2)                                                  <---------ANAC58                   <---------AtMYB61                                                  <---------ANAC58              =====================                                                  <---------AtLEC2              <------ZmHOX2a(1)                                              --------->CCA1(2)             <---------ANAC46                                              --------->GLK1(1)             <---------O2                                             <---------ARR11(3)        --------->ANAC46                                             --------->ARR11(3)        <---------ANAC55(2)                                             --------->ARR14(2)        --------->ANAC58      >>>>>>>>>SARD1                       ----------->ARR10           --------->ANAC55(2)      >>>>>>>>>CBP60g        --------->At4g35610<---------YAB1         --------->ANAC58 ----------->GT1    >>>>>>>>>TBF1     ---------->DOF2              --------->YAB1<---------ORA47(1) ---ZAT6 <---------LBD16   <---------------------WRI1    ----------->GT1 ----------->HVH21 -->ALFIN1       >>>>>>>>>TBF1  <-------TEIL <---------ARR14(2)   <---------ATHB12<---------DEAR3(1)-   gagtggaaatttgggggaagaagaagaaggaagatgcatataaaggagatatgcttggagggttttaaatcatacgcgacgaggacggtggtttctggtt  25073600                                     <---------HSFB2a(2)                                     --------->HSFB2a(2)                                 --------->YAB1                        <---------ARR14(2) --------->GLK1(2)                      <-----------GT1             --------->ANAC46   <---------MYB46(3)<---------ARR11(3)           <---------GLK1(1)   <---------ALFIN1     --------->ARR14(2)--------->GLK1(1)           <---------ANAC58  <---------ATHB12 <------ZmHOX2a(2) --------->MYB52(1)----------->GT1                  <---------ANAC58 ------>MYB83 =======HOX2a_HOX2a<---------DOF5.7(2)--------->LBD16              <---------MYB52(1)  ------>MYB46(1) -------->ARR14(2)----------->HVH21 <---------LBD16   ------>ZmHOX2a(1)    <---------ANAC46   tcgatccacatttcaacgcgataacgggtctgaatggttcgggaaaatccaacatcctcgattccatctgtttcgttctgggtatcaccaatcttcagca  25073700                <---------LBD16            <---------ZAT2                     ----------->HVH21    <---------ZAT2              --------->ANAC58                            <----------DOF2    <---------At4g35610         --------->ANAC58                       <---------MYB52(1)    --------->At4g35610         --------->ANAC46                      <-------GAMYB     --------->LBD16    --------->ZAT2 <------ZmHOX2a(1)       --------->ZAT2   ------>NtERF2  --------->TOE2(3)      ---   agttcgagctgctaatcttcaggaactcgtctataagcaaggccaagctgggattactaaggcgactgtctcggttacctttgacaattccgagagacac  25073800                                                                                            <--------                                                                                            <--------                                                                       --------------->AtSPL8                                                           <------------------------ANAC81  <--------                                                        <----------DOF2<---------------AtSPL8<-------                                               --------->ANAC58      <-----------RAV1(1) <-------MYC3 ------->DOF2             --------->LBD16      --------->ANAC58   <----------DOF2        ------->MYC3   agaagccctctcggctacgaagaacatccagagattactgtgactagacaagtatgttctttgtttctcttttgttgtactcatcaattcatgtgcttga  25073900                                     ----------->GT1                                     <---------ZAT6                                  <---------AtMYB61                            ------->TEIL                <---------MYB46(3)                            --------->ARR14(2)          <------MYB46(1)                            --                            <---------ARR14(2)          <------MYB83                             ----                            <---------ARR11(3)         --------->MYB111(1)                       ---- -ANAC58                   <---------CCA1(2)           --------->MYB111(2)              --------->At4g35610 -AtLEC2                 <---------ANAC58              --------->MYB55(2)               <---------At4g35610 -ANAC58  <----------DOF2<---------ANAC58              <---------MYB46(3)              --------->ANAC58 --WOX13(1)--------->DOF5.7(2) <----------DOF2         <---------AtMYB61               --------->ANAC58   caaaatttgagactttaacttggaattgtgtatcttttggtgttaaaaagattgtagttggtggaaggaacaagtatttgataaatgggaagctagcaca  25074000  Previous    Next  AGI:  At5g62410.1    Description:  SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2). Identical to Structural maintenance of chromosomes protein 2-1 (SMC2-1) [Arabidopsis Thaliana] (GB:Q9C5Y4;GB:Q9FJK1;GB:Q9FUY9); similar to ATSMC2 (Arabidopsis thaliana structural maintenance of chromosome 2) [Arabidopsis thaliana] (TAIR:AT3G47460.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68529.1); similar to SMC2 protein [Oryza sativa] (GB:CAD59410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42737.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395); conta Range:  from: 25073488    to: 25079851    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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