Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ARR14(2)                                      <---------ARR14(2)                                     <------ZmHOX2a(1)                                 <---------TOE1(1)                              --------->TOE1(2)                 <---------RVE1(1)                              --------->TOE2(2)     ----------->RAV1(1)                          <---------AHL20(2)       <----------ID1                              ------                         <---------AHL20(2)      --------->ANAC58                              ------  <----------DOF2        --------->AHL20(2)      --------->ANAC58    <---------HSFB2a(2)       <-----   aacgcttttgtctcttgtctatctaaattaaatctacgaggaaacgaagagaagcaacaaaattcgatattttagaagtcttgcataaataagaagaagg  25067500                                                                                   <---------YAB1                                                          ----------->GT1        --------->YAB1                                                         <---------ARR11(3)     --------->ICU4                                                 <---------WOX13(1)             <---------YAB1  --------->ANAC58                              >>>>>>>>>ARR1                 --------->YAB1  --------->ANAC58                             --------->ATHB12              --------->AHL20(2) ----->GT1  <----------DOF2                   <---------YAB1                 <---------YAB1 --->HSFB2a(1)                         <---------YAB1    --------->ARR11(3)  <---------AHL20(2)   --- ----HSFB2a(1)                      ------->TEIL>>>>>>>>>ARR2        <---------ANAC46           -----   tttcaagtaagtttctttcagtacatagagaaaccatgtatatgatttatgattgtcaagatgttacacagtcgtatatataattataagtatttcataa  25067600                                                                              --------->AHL20(2)                                                                              <---------AHL20(2)                                                                            --------->ICU4                             <----------DOF2                                <---------YAB1                        <------------MYB.PH3(2)                           --------->YAB1           <-                   --------->ANAC46                                      <---------YAB1        <-----       <---------YAB1   <---------MYB52(2)                              <-----------GT1        <-----    <---------AHL20(2)  <---------MYB59                                --------->YAB1          <----- -------->GT1     ------->TEIL                   <------------CBF     <---------YAB1      <---------YAB1 ----->DOF2    --------->AtLEC2             ----------->GT1        <---------YAB1     <-----------TBP   aagtaatttatgaaaccatgcacataactaacttttgtttttgattttgtaaattgagtagtttttgtttttattatcatttttatgtgtttatagttgg  25067700                                <----------DOF2                               <---------DAG2                         --------->ANAC58                         --------->YAB1                         --------->ANAC55(1)        <---------CCA1(1)<---------ANAC55(2)        <---------RVE1(1)--------->ANAC58       <---------ARR11(3)--------->ANAC46     ----------->ARR10 --------->MYB52(1)                                                  <---------ANAC58 <---------At4g35610   ------>MYB83                                                        <---------ANAC46 --------->At4g35610   ------>MYB46(1)  <---------ICU4       --------->TOE2(3)             <---------ANAC55(2) ----------RAV1(2)  --------->MYB46(3) --------->ICU4        <----------DOF2          --------->MYB52(2) -MYB83--------->ARR11(3)--------->ANAC55(2) --------->MYB52(1)            ------>ZmHOX2a(1) -MYB46(1)        <-----------GT1    --------->YAB1===============================HOX2a_HOX2a ----MYB46(3)<---------YAB1    --------->TOE2(3)   <------ZmHOX2a(2)    <-----------GT1    <---------ANAC58   ttcagccgagatattatgagtaaccaaacgtaacctttttcataatgaaacggatcaaatatactttaatctttttcctacatatgcttagttacttgaa  25067800                                      ------->TEIL                                      <---------At5g28300                            <----------DOF2                         <---------ARR14(2)                         --------->ARR11(3)                         <-----------ARR10          --------->DAG2                               ----                         <---------ARR11(1)        ---------->DOF2                            <------                         --------->ARR14(2)     --------->YAB1                            --------->AHL20(2)                         <---------ARR11(3)    <---------YAB1              <------------CBF   -------                        <---------CCA1(2) --------->ANAC46         <------------CBF       <---------AHL20(2)       <-----------GT1  <---------GLK1(1)<---------LBD16      <-----------GT1            --------->AHL20(2)   aacttgatttcacattacttctatgcatatcttttctatgtaccgcgcgatgataaagtatgtgttacaaattgccacattgcagaaaatataaaattaa  25067900          ---------->DOF2        --------->LBD16  ==================================HOX2a_HOX2a              --------->ARR11(3)  <------ZmHOX2a(2)             --------->LBD16              <---------ARR11(3)                     < --------->ARR11(3)            <---------LBD16   ------->GAMYB                                      - <---------ARR11(3)          ------>ZmHOX2a(1)   ----------->HVH21    >>>>>>>>>WRKY6               <- ------>DOF2         --------->ANAC58           --------->SPL7      --------->WRKY38(1)       <------ ---AHL20(2)         <---------ALFIN1           --------->DEAR3(2)  --------->WRKY12          <------ -->AHL20(2)         --------->ANAC58           --------->MYB46(3)  --------->WRKY45   ---------->DOF2   aaagatcaaatggaaagtctcgcacacattcctcccggttatcgattccatccgaccgatgaagaactcgttgactattatctcaagaacaaagttgcat  25068000                                                                                              -------                                                                                             <-------                                                                                           --------->YAB1                                                                                           <---------ICU4 --------->LBD16                 --------->ARR11(3)                                       --------->ICU4 ---------LBD16            <---------ARR11(3)                                           --------->YAB1 -------->LBD16            --------->ARR11(3)                                      ------>MYB83 --------LBD16         ---------->DOF2                                  ------->TEIL   <-------TEIL ---ANAC58           <---------YAB1------>ZmHOX2a(2)            <---------TOE1(2)  ------>MYB46(1) ---ANAC58     <---------TOE2(3) <---------ARR11(3)       --------->GLK1(1)       ----------->RAV1(1)   tcccgggaatgcaagttgatgttatcaaagatgttgatctctacaaaatcgagccatgggacatccaaggtatgtatgcattaccaacattcattatgat  25068100                                                                              <----------DOF2                                                                             <---------DAG2                                                                            ----------------->AGL1                               --------->YAB1                              <-----------------AGL1                            --------->YAB1           --------->YAB1       <-----------GT1 -->ATHB12               --------->YAB1         <---------YAB1 <---------At4g35610                 <- --YAB1                 --------->ZAT6   <---------GLK1(2)     --------->At4g35610            <------   ttcatcagttatatcatatactactaatactaataaaaactcaaattcttctcattcaaaatcactgctgaaaatgttaccttttgggaacatatagagt  25068200                                                                                                    -                                                                              --------->MYB46(3)    <                                                                          --------->ANAC46          <                                                                 --------->ZAT2                 <----                                                                 <---------ZAT2    ---------->DOF2---                                                           --------->CCA1(1) ------->TEIL       <----                                                      --------->ANAC58    <---------MYB52(2)  <------                              ----------->GT1     <------ZmHOX2a(1)       --------->ANAC58    ------- --------ANAC46<------ZmHOX2a(1)                 <----------ID1  ----------->RAV1(2)    --------->MYB52(1) ---ZAT6    <-----------RAV1(2)       <----------DOF2 --------->ANAC58    --------->ANAC58 ------->GAMYB   tatgtggaagagggacaggagaagagagggaatggtatttctttagccacaaggacaagaaatatccaactgggacacgaaccaatagagcaacgggctc  25068300                                                                                              <------NtERF2                                                                                            ---------         --------->ANAC58                                                                   ---------       ---------->DOF2                                                                      <-------- -------->ARR14(2)                                <----------DOF2                          --------->ZAT18 ---------ARR14(2)                               <---------ANAC58                         <---------PCF2 ---------GLK1(2)                                <---------ANAC58                        <------MYB46(1) --NtERF2--------->ANAC58                      <---------ARR11(3)                      --------->ALFIN1 ------>LBD16                                  --------->ARR11(3)                      <--------P -----LBD16                              --------->ANAC58                   <----------DOF2<---------ZAT18 ---ARR14(2)                             --------->ANAC58                 ---------->ID1 <------MYB83 -->ARR14(2)--------->MYB52(1)         ---------->DOF2         <------ZmHOX2a(1)    <---------TOE2(3)   cggattttggaaagcaacgggtcgagacaaggccatttactcaaagcaagagcttgttgggatgaggaagactcttgtcttttacaaaggtagggcccca  25068400  Previous    Next  AGI:  At5g62380.1    Description:  VND6 (VASCULAR-RELATED NAC-DOMAIN 6); transcription factor. similar to VND4 (VASCULAR RELATED NAC-DOMAIN PROTEIN 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G12260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42681.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) Range:  from: 25067910    to: 25069084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version