Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <-----------GT1                                          --------->ARR14(2)<---------TOE1(3)                         --------->ZAT6   <---------ARR14(2)<---------TOE2(3)                      --------------->AGL15             <----------DOF2   --------->ZAT2                      <---------------AGL15   ------>ZmHOX2a(1)           --------->At4g35610         --------->TOE2(3)     <------ZmHOX2a(1)  <---------ATHB12        <---------At4g35610         --------->TOE1(3) --------->TOE1(2) --------->TOE2(3)      ---------->DOF2   aaaaaactaaaccttcaaaattcactaaaactaggaaaacattgaatcctcaaacattctttacggttttgaaagcagctcaaaactaaattgctgaagc  25039300                                                                                                 ----                                                                                             --------                                                                                             --------                        <------ZmHOX2a(1)                                                    ------->TEIL                        ----------->GT1                                                 ----------->GT1                       ----------->GT1   <---------DAG2                             <---------ARR11(3)             --------->YAB1              <----------DOF2                            --------->ARR11(3)        --------->ARR11(3)        ---------->DOF2  <---------ARR11(3)     ----------->GT1 <xxxxxxxxxx        <---------ARR11(3)    ---------->DOF2      --------->ARR11(3)========================HOX2a_HOX2a  --------->YAB1       <----------ID1 --------->ARR11(3)             <------ZmHOX2a(1)------>ZmHOX2a(2) --------->ICU4     ---------->DOF2   <---------ARR11(3)    --------->GLK1(2)  --------->ICU4<-------   gaaatgataagataatcaaaataaaaggataaaaaagaaagacctttttccaagttcttgacattcttggaggagagagtaattctgatcttgtgaatct  25039400                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                              <------                                                                                              -------                                                                 <---------At4g35610          <------                                                          <---------ICU4                      <------                                                      <------NtERF2      <---------HSFB2a(2)  <------                                                     ------>NtERF2<---------GLK1(2)           -------                                        <--------P  <---------ETT(2)     --------->HSFB2a(2)  -------    --------->ALFIN1                    <---------WOX13(1)<---------ARR14(2)               --------->ANAC58 ----->At4g35610            --------->LBD16 --------->ARR14(1)   <---------ZAT2    --------->YAB1<--- ->GLK1(2)          ------>MYB83      <---------MYB46(3)  --------->ARR14(2)    --------->WOX13(1)--- ->ARR14(2)         ------>MYB46(1)--------------------->WRI1    --------->At4g35610     <---------ALFIN1 xxxxxxxxxxxxsmallRNA(si3)  <---------TOE1(2)       --------->ETT(2)   <---------At4g35610 --------->ANAC58 --ARR14(2)    --------->ANAC46   --------->ATHB12<---------ATERF1(1)  --------->At4g35610 --------->ANAC46   gctcgagtggctcttccaaaccagccttccctggtttcattggttgatacgctgtcgccatatttgcagcttcttctgaaaacaatcacaaacacaccaa  25039500   --------->WOX13(1) <---------ATHB12 ----->MYB46(1) ----->MYB83 ------->WOX13(1) ------ATHB12 ----->MYB46(3) ---->ANAC58 ->MYB83 ---->ANAC58 --->P ->MYB46(1) --->MYB55(1)                                                                                       < ---MYB55(2)                                                                                  ------- -->DEAR3(1)                                                                                  <------ ---MYB46(2)                                                                            --------->MYB52(1) ---MYB111(1)                                                                 --------->TOE1(2)     < ---MYB111(2)                                                                 --------->TOE2(2)     < -->MYB46(3)                                    <---------AHL20(1)           ----------->RAV1(2) ---- -->AtMYB61                                     --------->AHL20(1)<---------ANAC55(2)<--------------- ------MYB55(2)       ------>ZmHOX2a(2)   ----------->GT1      <------ZmHOX2a(2)    --------->CCA1(2) ------>AtMYB61   <---------ATHB12     --------->ICU4<---------AHL20(2)     --------->GLK1(2)------->TEIL   ccaatccatcacattaacaaatgatccgataaactcatgtaaacatgaaaaatattaaaacttggatcaagtgaagagaacctgagagacgaacgaagct  25039600           <---------DAG2           <----------DOF2       <---------WOX13(1)      <---------ARR14(2)     <------NtERF2   <---------ANAC46  <------NtERF2  <---------LBD16                                                --------->AHL20(2) <---------RAP2.3(1)                                       <-------GAMYB <---------ATERF1(1)                                   --------->CCA1(2) ------>NtERF2  <---------At4g35610                --------->MYB52(1) ---------RAP2.3(2)                              --------->TOE1(3) -->ZAT2  <---------ANAC58                       --------->TOE2(2)                          ------->TEIL ---ZAT2  <---------ANAC58                       --------->TOE2(3)                   --------->AHL20(2) ---------DEAR3(1)              <------ZmHOX2a(1)--------->TOE1(2)     <---------YAB1<---------AHL20(2) ---------RAP2.3(3)   --------->ANAC58        <-----------GT1 *TSS<---------AHL20(2)<---------AHL20(2) ------->HVH21  --------->At4g35610      --------->ATHB12 ----------->GT1     --------->TOE2(3) --------TaNAC69(2)   --------->ANAC58  <---------ATHB12  <---------MYB46(3)  --------->TOE1(3)   cgacggcggattgctttttgctgcaaggaaggaaggagtcgaatgatttaacctaagagacggttgatttaatatgaaaaccctaatttatatggacttg  25039700                                  <---------ARR11(3)                                  --------->ARR11(3)                                  --------->AHL20(1)                                  <---------AHL20(1)                                              ---                                 --------->YAB1                                                   <--                          <----------ID1                                   <---------ANAC58      ----                   ------------>CBF                                        <---------ANAC46     <----                 --------->At4g35610                                       <---------ANAC58  --------                 <---------At4g35610                                <---------MYB59          --------       ------------>CBF <---------ICU4                <----------DOF2   <---------ATHB12     <-------       <---------ATHB12<---------ATHB12           <<<<<<<<<<GT-3b<-----------GT1             <-------   ttgggcccaaacaatattcagcccaataactacaaaaatatttgctctgtatttttcttttgtgttttgacccaattacttggaaaacaattcattttat  25039800        --------->ANAC46                                                           <---------HSFB2a(2) ------>AHL20(2)                                                                   --------->HSFB2a(2) -------AHL20(2)               --------->AHL20(2)                               <---------AHL20(2) ----->AHL20(2)              --------->TOE2(3)               <---------YAB1  <---------AHL20(1) -----YAB1                --------->AHL20(2)         ----------->GT1         --------->AHL20(1) ->AHL20(2)           --------->AHL20(2)            <-------MYC3           <---------TOE2(3) ->AHL20(1)           <---------AHL20(2)   <---------YAB1  --------->YAB1--------->AHL20(2) --AHL20(1)          --------->AHL20(2)    --------->ICU4 <---------YAB1 <---------AHL20(2) --AHL20(2)  <---------YAB1 <---------ANAC55(2)     ------->MYC3        --------->AHL20(2)   <-------   taaaaaatacaaaccatgtttgatttaattacataaatttttgtaatgaataaacgtgttattataaaaaacaaattaatattttttagaagttttaacc  25039900             <---------ANAC58             <---------ANAC55(1)             <---------ANAC46             <---------ANAC58           --------->SPL7                                                               <----------DOF2   --------->ARR11(3)           --------->LBD16                              --------->AHL20(1)    <-   --------->AHL20(1)     <---------WRKY38(1)   --------->SPL7               --------->AHL20(2)    --   <---------ARR11(3)     <---------WRKY12     --------->MYB52(1)            <---------AHL20(2)    --  --------->RVE1(1)       <---------WRKY45   --------->ANAC58               --------->AHL20(2)     <-  --------->CCA1(1)      --------->WRKY18(1) --------->ANAC58     <---------AHL20(2) --------->ARR11(3) ----GT1   <---------At5g28300------->GAMYB  <---------MYB52(2)   --------->AHL20(2) <---------ARR11(3)   aaaaatatcttggtaccgtgttttttagtcaacccagagaaaacatcacgaacggctattttttaaaattaaacaaaaaaaaattaagttctttgttatt  25040000                                                                        <----------DOF2                       <---------MYB46(3)                            <---------YAB1                       <-----------RAV1(1)                          --------->KAN4(2)                 --------->ANAC58                                  <---------KAN4(1)                <            ----------->ARR10     --------->ANAC46                <---------YAB1                  --- --------HSFB2a(2)  ------->TEIL  --------->ANAC58             <---------YAB1                    ---- ------->HSFC1(1)--------->ANAC58 --------->ANAC58             --------->ICU4                -------- ------->HSFB2a(2)<-------TEIL    --------->ANAC55(2)      ----------->RAV1(1)            --------->YAB1 --------HSFC1(1)--------->AtLEC2 <---------ANAC55(2)      <---------ALFIN1              <---------ATHB12   tctagaaaatggggaagacatgcatttgttggaagcacgtagtttcgatatggacactctcccacatgattattctttaagaactatacaaatcataaaa  25040100        --------->TOE2(3)       --------->YAB1              --------->YAB1      <---------ATHB12          --------->YAB1               --------->ZAT6  <---------YAB1          <---------REM1(1)             <----------DOF2                           --- -----------GT1        --------->ALFIN1           --------->YAB1                           --------->YAB1 ------>ARR11(3)    <---------TOE1(3)  --------->DAG2   --------->TOE2(3)               <---------ICU4 ----->RVE1(1)      <---------TOE2(3) ---------->DOF2<-----------GT1  --------->CCA1(2) --------->YAB1 ->AHL20(2)--------->YAB1 ----------->GT1        --------->ICU4   <---------TOE2(3)   <---------KAN4(2)   tatcaccattcattaataacttaaggtgttgtaagaataataaagtcagaaattataactttagcactatggatataagaatacaacgaataatcacaaa  25040200  Previous    Next  AGI:  At5g62300.1    Description:  40S ribosomal protein S20 (RPS20C). Identical to 40S ribosomal protein S20-1 (RPS20C) [Arabidopsis Thaliana] (GB:P49200;GB:Q42168;GB:Q9FPI1;GB:Q9LDG8); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62522.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, eukaryotic/archaeal; (InterPro:IPR005729) Range:  from: 25038426    to: 25039662    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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