Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------AHL20(2)                                         ----------->GT1                                         <---------ANAC46                                       --------->ZAT14                                <---------ZAT6 <---------AHL20(2)                         <---------ARR11(1)      ---------->DOF2    <---------YAB1<---------ZAT14                  <----------DOF2   ------->TEIL     --------->AtMYB61  <----------DOF2--------->ZAT18       <----------DOF2    --------->ATHB12   >>>>>>>>>>MYB80   <-----------GT1   <---------ZAT18       <---------DAG2  --------->ANAC55(2)    < ------>ID1<----------DOF2  <---------YAB1     --------->AHL20(2)<---------AHL20(2)      <---------CCA1(2)   tctcaaaccaaagctttagtatttatctttattagtggtagtggagtaaataaatgaaaaaaacttttttatttctttcacttgatttgtcgaatctctc  24885000                                                                   <------------CBF              <---                                                                  <---------ICU4                <----                                                                  --------->ATHB12              -----                                                                  --------->ATHB51            <------                                               *TSS               -------->ATHB1              -------                                        ----------->RAV1(1)       <--------ATHB1             <-------           <----------DOF2              ------>MYB46(1)          <---------ATHB51         <----------          ------>ZmHOX2a(2)             ------>MYB83             --------->ICU4      --------->ARR14(3)        --------->ARR11(3)             --------->ANAC46          <---------ATHB12    <---------ARR14(3)        <---------ARR11(3)            <---------MYB59            <---------YAB1      --------->ARR14(2)     <---------ANAC58                 --------->MYB46(3)      ------------>ATHB5     <---------ARR11(3)     <---------ANAC58                --------->ANAC58        ------------>CBF        <---------GLK1(2)    <---------At4g35610              --------->ANAC46        <-------TEIL            <---------ARR14(2) -----------RAV1(1)                  --------->ANAC58--------->GLK1(2)               --------->ARR11(3)   tcttgttgctgatcttttcaagttcgaatttttgttcatacccaacatgaagacgattctagattcaattattgagctagatttgaagattttcactcat  24885100                         <---------------AGL15                 --------->LBD16                --------->HSFB2a(2)                <---------HSFB2a(2)      --------->ATHB12   --------------->AGL15  <---------YAB1--------->LBD16 ------ICU4    --------->HSFB2a(2)                                        <---------YAB1 -----YAB1     <---------HSFB2a(2)                                      --------->YAB1 ---->ICU4     <---------ANAC46          --------->ANAC58            --------->YAB1 ---ICU4       <---------LBD16           --------->ANAC46           --------->ICU4 -->YAB1      <---------LBD16            --------->ANAC58  --------->GLK1(1)                       -- --ATHB12--------->AHL20(2)           <---------ZAT18      <---------GLK1(1)                       -- -GT1<---------YAB1     <-----------------AGL1  --------->ALFIN1    <---------ATHB12            -----   tattttgatgatttattccgggaaattctcaaacgggtaatgcacacaaggtgtttgatagaattccccaatgatcaaaattgtgtctctgttttgctat  24885200                    =================================================bZIP_DOF                    --------->ANAC55(2)                    =========================================MYC_MYB                    <---------ANAC55(2)                    <---------O2                    --------->O2                    --------->ANAC46                    --------->TGA1a                    <---------TGA1a                <-----------HVH21          <-------MYC3          ------->MYC2          <-------MYC2          ------->MYC3         <---------TGA1a         --------->O2------->MYC3         <---------O2<-------MYC3         =================bZIP_DOF         <---------bZIP60(2)         <---------ANAC46         <---------ANAC58                                                              <---------At4g35610         --------->TGA1a                                                        --------->WRKY38(1)         =====================bZIP_bZIP                                         --------->DEAR3(1)         <---------ANAC58           <---------ANAC46                           <------NtERF2         <---------ANAC55(2)        <---------ANAC58                        --------->LBD16         <---------ANAC55(1)--------->CCA1(2)                         <---------ARR14(2)         --------->ANAC55(2)--------->ARR14(1)               <---------ANAC58 <-----------HVH21     <-----------HVH21     --------->ARR11(1)             <----------DOF2   ------>NtERF2     <-----------------PIF3(1)      <---------ANAC58     <---------ANAC58  --------->ANAC46    --------->bZIP60(2)  <---------YAB1                  <---------ANAC58  <---------ALFIN1 ------->ANAC58<----------DOF2    --------->ABI4(2)   <---------MYB52(1)  <---------LBD16 ------->ANAC58===============bZIP_DOF        --------->ICU4 <---------ANAC58 --------->REM1(2) ------------------>TaNAC69(2)    ------>NtERF2      <-------GAMYB    --------->ARR14(2)   caagccttgtcacgtgtctttcacgtgatgatacggtgccttgctgtcattagtcagttactttcgtttgagtttccccgcgtcgactctgcttcttctc  24885300                                                     --------->ARR11(3)                                                    <---------GLK1(2)                     ----------->GT1            ---------->DOF2      <---------ANAC58                    >>>>>>>>>TBF1           --------->ANAC58         <---------ANAC58                --------->LBD16             --------->ANAC58         <---------ANAC46   <----------DOF2       <---------GLK1(1)                  ---------->DOF2     --------->GLK1(2)  <---------GLK1(2)<--       --------->GLK1(1)              ---------->DOF2--------->GLK1(2) --------->DOF5.7(2) <---------AtLEC2   gcgattcagatttctctccgaagaagaaaaaccctagagaaaaagaaagcaaaagaatcttgagaatcgtttcgtttactatggattcttctttcatgga  24885400                                                                                    --------->CCA1(2)                                                                                   --------->ARR14(2)                                                      <------ZmHOX2a(2)            --------->ARR11(3)              <---------ALFIN1                       <---------ARR11(3)            <---------ARR14(2)          --------->ZAT18                            --------->ARR11(3)   <---------YAB1          <---------At4g35610                       <---------GLK1(1)     --------->ICU4          --------->At4g35610              --------->YAB1                <---------ARR11(3) -------At4g35610                       <----------DOF2           <----------DOF2  <---------ARR11(3)   agatgatgagggagcacaactccttgaagatgctcaaaaactctttgataatggagatcacatcaaggctttggagataattgaagatttgattttagtc  24885500                                                                                   <---------ANAC55(2)                                                                                   --------->bZIP60(1)                                                                                   <---------bZIP60(1)                                                                                   <---------TGA1a                                                                                   <---------O2                                                                                   <---------ANAC58                                                                                   --------->O2                                                                                   ----------->GT1                                                                                   <---------ANAC55(1)                                                                                   ==================                                                                                   <---------ANAC58                                                                                   <---------bZIP60(2)                                                                                   <---------ANAC46                                                                                   --------->TGA1a                                                                                 <---------TGA2(2)                                                                                ------>ZmHOX2a(1)                                                                                ----------->TGA1                       <------NtERF2                                            ----------->HVH21                     <---------ANAC46                                         ----------->RAV1(2)                     <---------RAP2.6(2)                                      ----------->bZIP910(2)                     <---------ANAC58                                         ------>ZmHOX2a(2)                     <---------ANAC58                                       --------->ARR14(3)              ------->GAMYB                                                 <---------ARR14(2)            <---------At5g28300                                             --------->ARR11(3)           <-----------GT1                                                  <---------ARR14(3)        --------->CCA1(2)                                                   --------->ARR14(2)     <-       <---------ARR11(3)                                  ------>MYB83     <---------ARR11(3)     <-       <-----------ARR10                                   --------->MYB52(1)<------ZmHOX2a(2)<------       --------->ARR11(3)              ----------->GT1     ------>MYB46(1) <------ZmHOX2a(1)  <------   catggggaagatataaccgcatggcgtcttcatatcagagaaggtaaaatgtttgatgacctagcgaagaaaacagaggatcctgacgtgaaatttgctt  24885600                                    --------->ANAC55(2)                                    <---------ANAC55(2)                                    --------->ANAC58                                    --------->ANAC58                                 <---------SPL7        <---------At4g35610    --------------->AtSPL8      <---------ANAC58 --------->HSFB2a(2)                             <---------MYB52(1)      <---------ANAC58 <---------LBD16                               <-----------RAV1(1) =========bZIP_DOF     <---------HSFB2a(2)<-----------GT1            ------>ZmHOX2a(1) --------DAG2      <---------ANAC58--------->SPL7          <---------ZAT18                  --------- ---------DOF2     <---------ANAC58<-------TEIL            <---------ZAT14         <---------ANAC58 ---ANAC58 --------->At4g35610 <---------------AtSPL8      --------->ZAT14         <---------ANAC58 ---ANAC58 <---------At4g35610 <---------------AtSPL3      --------->ZAT18        --------->ATHB12   actttttggcttctgctgaatgcttctcggaagatggtacgttatcaccaatttgtgctagttcactcttcctgttgggccaaatgcttgggtcagtatt  24885700                                                                      <-------GAMYB                                                                     <-----------RAV1(1)                                                                  --------->GLK1(2)                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                                 <---------GLK1(2)                                                                <---------At4g35610                                                       --------->ANAC58                                                       --------->ANAC58                                                       --------->ANAC46                                             --------->ZAT6    ----------->ARR10               ------                   ---------->DOF2         <-----------GT1 --------->ANAC58   <---------At4g35610 >ICU4      <----------DOF2              <---------MYB52(1)--------->ANAC58   --------->At4g35610   gtattacaagaagtctttgaagaaagcgaaacaaggtttatctgttaactctctcccaagcaagtcagattctgttgctcaactgagtttgcaagcgcaa  24885800                                            <---------ANAC46   --------->HSFB2a(1)        --------->At5g28300                              <---------ANAC46       <---------TOE2(1)                   <---------ZAT6                  ---------->DOF2        <---------ATHB12  ------>ZmHOX2a(2)     <---------MYB46(3)         XXXXXXXXXXXXXXXXXXX>MIR156H     ----------->HVH21<------ZmHOX2a(2)      <------MYB46(1)    -     <----------ID1--------->DAG2        ----------->TGA1<---------ARR11(3)      <------MYB83     --- ---->DOF2   --------->AHL20(2)      <---------ATHB12<---------TOE1(1)         <--------P----------->GT1   agagaattggacaaaaaaaataaagcactgttgagtttaatcaatgacgcagagtccgagatcgcatcttccaagactctagttggttctactgtaaaaa  24885900  Previous    Next  AGI:  At5g61930.1    Description:  APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3). Identical to APO protein 3, mitochondrial precursor (APO3) [Arabidopsis Thaliana] (GB:Q9FH50;GB:Q94JX7); similar to APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) [Arabidopsis thaliana] (TAIR:AT1G64810.2); similar to APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) [Arabidopsis thaliana] (TAIR:AT1G64810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64441.1); contains InterPro domain Protein of unknown function DUF794, plant (InterPro:IPR008512) Range:  from: 24883301    to: 24885047    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61940.1    Description:  ubiquitin carboxyl-terminal hydrolase-related. similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT5G51530.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT5G61950.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G52450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62486.1); contains InterPro domain Protein of unknown function DUF627 (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Protein of unknown funct Range:  from: 24885381    to: 24889943    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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