Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                   <------NtERF2                    <                                                              --------->ANAC58                      -                                                              --------->ANAC58                   ----                                                              --------->ANAC55(2)                <---                                                              <---------RAP2.6(2)         <---------ETT(2)                                                              <---------ANAC55(2)         --------->ETT(2)                                                             <---------At5g28300       <---------O2 -                                                             <---------LBD16           --------->O2<-        --------->ICU4         --------->ATHB12              --------->RAP2.6(3)       <---------TGA1a  --------->TOE1(2)       <---------YAB1                    <-----------GT1            --------->TGA1a ----------->RAV1(2)   --------->ICU4                     <-----------HVH21          <---------ALFIN1 --->DOF2         <------ZmHOX2a(1)                  ----------->RAV1(1)--------->ZAT14--------->bZIP60(2)   gtaacctgcaacgatgaacaggaacatgatgaatgattttagagaggccagagagcaacatgttacggcatcggtgaacacagtgagccacgtcgacaag  24884600                                 --------->HSFB2a(2)                                 <---------HSFC1(1)                                 --------->HSFC1(1)                                 <---------HSFB2a(2)                             ------>ZmHOX2a(2)       --------->ANAC58     <---------GLK1(1)       --------->ANAC58    --------->ARR14(2) --------->LBD16           <---------AGP1 ------>NtERF2             --------->ARR11(3) ---------HSFB2a(2)        <---------ARR11(3) ---------ATERF1(2)        <---------ARR14(2) ---------ETT(1)          <---------CCA1(2)                                       --------->ANAC58 -------->ATERF1(2)      <---------MYB46(3)                                       --------->ANAC58 ----->ARR14(2)         --------->ALFIN1                                   <----------DOF2 ------ARR14(2)        <---------MYB52(1)                                ------>ZmHOX2a(1) -------->HSFB2a(2)   --------->LBD16                                <-----------GT1 --------LBD16      <---------LBD16                            <---------MYB52(1)--------->SPL7  ----   ttccggcacaagtaaaccattatccggtggatcttcgagaactcgacatggttgtaattttctcagttgtttctcctctttcgcacgacgaatcaactcc  24884700                                                                              --------->ICU4                                                                              <---------YAB1                                                                    <---------ARR14(3)                                                                    --------->ARR11(3)                                                                    --------->GLK1(2)                                                                    --------->ARR14(2)                                                                    --------->ARR14(3)                                                         <------NtERF2------>ZmHOX2a(2)                                                        <---------ORA47(2)  <--------HAHB4                                                        ------>NtERF2<------ZmHOX2a(2)                                                   <-------TEIL     <-----------ARR10            ----            --------->ARR14(1)           <---------TOE2(2)   ---------->DOF2<---------ICU4       <---            --------->CCA1(2)        <---------LBD16    <---------DEAR3(2)  --------->YAB1    -------           <---------ARR14(2)       ------>ZmHOX2a(1)  <---------DEAR3(1)  --------->ICU4     -------           --------->ARR14(2)   <-----------GT1<---------TOE2(3)    <---------ARR14(2)        <------        <---------ANAC46       <-----------GT1 --------->MYB59      <---------ARR11(3)------->GAMYB <---------At4g35610  ------>ZmHOX2a(1)  <---------TOE1(2)<---------ANAC46 <---------YAB1     <------ -->ZmHOX2a(1)   <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B  --------->SPL7  <------ZmHOX2a(1)--------->At4g35610   ttcatcggagtcggatacggtttcctctccgatttatccttcggaggtttaggtacgtcggcgtaaagaggatcttcatcattatcaactgaaacgtcga  24884800       <------MYB83       <------MYB46(1)       <---------MYB46(3) ----->O2                              <---------ARR11(3) ------O2                              --------->ARR11(3) -->DEAR3(1)                ----------->GT1 -->ETT(2)                --------->At4g35610<---------YAB1 ---ETT(2)        <---------AHL20(2)   <---------GLK1(2)                  <----------DOF2        ---- ---DEAR3(1)     --------->AHL20(2)  ----------->ARR10         --------->GLK1(1)         <---------AHL20(2)   cgtcgagattggttagagatttaatggaagatgaaaaattagattttctgattacgaagatggagatttctactagctttcttctctgcatttttttttg  24884900                                                <---------AHL20(2)                                         ----------->GT1                                         <---------ANAC46                                       <---------ZAT14                                <---------ZAT6 <---------AHL20(2)                         <---------ARR11(1)      ---------->DOF2    <---------YAB1<---------ZAT18                  <----------DOF2   ------->TEIL     --------->AtMYB61  <----------DOF2--------->ZAT14       <----------DOF2    --------->ATHB12   >>>>>>>>>>MYB80   <-----------GT1   --------->ZAT18       <---------DAG2  --------->ANAC55(2)    < ------>ID1<----------DOF2  <---------YAB1     --------->AHL20(2)<---------AHL20(2)      <---------CCA1(2)   tctcaaaccaaagctttagtatttatctttattagtggtagtggagtaaataaatgaaaaaaacttttttatttctttcacttgatttgtcgaatctctc  24885000                                                                   <------------CBF              <---                                                                  <--------ATHB1                -----                                                                  -------->ATHB1                <----                                                                  --------->ATHB51            -------                                               *TSS               --------->ATHB12            <------                                        ----------->RAV1(1)       <---------ICU4             <-------           <----------DOF2              ------>MYB83             <---------ATHB12         <----------          ------>ZmHOX2a(2)             ------>MYB46(1)          --------->ICU4      <---------ARR14(3)        <---------ARR11(3)             --------->ANAC46          <---------ATHB51    <---------ARR14(2)        --------->ARR11(3)            <---------MYB59            <---------YAB1      --------->ARR11(3)     <---------ANAC58                 --------->MYB46(3)      ------------>ATHB5     --------->ARR14(2)     <---------ANAC58                --------->ANAC58        ------------>CBF        <---------ARR11(3)    <---------At4g35610              --------->ANAC58        <-------TEIL            <---------GLK1(2) -----------RAV1(1)                  --------->ANAC46--------->GLK1(2)               --------->ARR14(3)   tcttgttgctgatcttttcaagttcgaatttttgttcatacccaacatgaagacgattctagattcaattattgagctagatttgaagattttcactcat  24885100                         --------------->AGL15                 --------->LBD16                --------->HSFB2a(2)                --------->LBD16      --------->ATHB12   <---------------AGL15  <---------YAB1<---------HSFB2a(2) ------ICU4    --------->HSFB2a(2)                                        <---------YAB1 ---->ICU4     <---------LBD16                                          --------->YAB1 -----YAB1     <---------HSFB2a(2)       --------->ANAC58            --------->YAB1 -->YAB1       <---------ANAC46          --------->ANAC58           --------->ICU4 ---ICU4      <---------LBD16            --------->ANAC46  --------->GLK1(1)                       -- --ATHB12--------->AHL20(2)           <---------ZAT18      <---------GLK1(1)                       -- -GT1<---------YAB1     <-----------------AGL1  --------->ALFIN1    <---------ATHB12            -----   tattttgatgatttattccgggaaattctcaaacgggtaatgcacacaaggtgtttgatagaattccccaatgatcaaaattgtgtctctgttttgctat  24885200                    =================================================bZIP_DOF                    --------->ANAC46                    --------->ANAC55(2)                    <---------ANAC55(2)                    =========================================MYC_MYB                    <---------TGA1a                    <---------O2                    --------->O2                    --------->TGA1a                <-----------HVH21          ------->MYC3          <-------MYC3          ------->MYC2          <-------MYC2         =====================bZIP_bZIP         <---------ANAC58         <---------TGA1a         <---------ANAC46         --------->O2------->MYC3         <---------O2<-------MYC3         <---------ANAC58                                                              <---------At4g35610         <---------ANAC55(1)                                                    --------->WRKY38(1)         --------->TGA1a                                                        --------->DEAR3(1)         <---------bZIP60(2)        <---------ANAC58                           <------NtERF2         <---------ANAC55(2)--------->CCA1(2)                               ------>NtERF2         =================bZIP_DOF  <---------ANAC58                  --------->ARR14(2)         --------->ANAC55(2)--------->ARR14(1)               <---------ANAC58 --------->REM1(2)     <-----------HVH21     --------->ARR11(1)             <----------DOF2   --------->LBD16     <-----------------PIF3(1)      <---------ANAC46     <---------ANAC58  <---------ALFIN1    --------->bZIP60(2)  <---------YAB1                  <---------ANAC58  --------->ANAC46 ------->ANAC58<----------DOF2    --------->ABI4(2)   <---------MYB52(1)  <---------LBD16 ------->ANAC58===============bZIP_DOF        --------->ICU4 <---------ANAC58 <-----------HVH21 ------------------>TaNAC69(2)    ------>NtERF2      <-------GAMYB    <---------ARR14(2)   caagccttgtcacgtgtctttcacgtgatgatacggtgccttgctgtcattagtcagttactttcgtttgagtttccccgcgtcgactctgcttcttctc  24885300                                                     --------->GLK1(2)                                                    <---------GLK1(2)                     ----------->GT1            ---------->DOF2      <---------ANAC46                    >>>>>>>>>TBF1           --------->ANAC58         <---------ANAC58                --------->LBD16             --------->ANAC58         <---------ANAC58   <----------DOF2       <---------GLK1(1)                  ---------->DOF2     --------->GLK1(2)  <---------GLK1(2)<--       --------->GLK1(1)              ---------->DOF2--------->ARR11(3)--------->DOF5.7(2) <---------AtLEC2   gcgattcagatttctctccgaagaagaaaaaccctagagaaaaagaaagcaaaagaatcttgagaatcgtttcgtttactatggattcttctttcatgga  24885400                                                                                    --------->CCA1(2)                                                                                   <---------ARR11(3)                                                      <------ZmHOX2a(2)            <---------ARR14(2)              <---------ALFIN1                       --------->ARR11(3)            --------->ARR14(2)          <---------At4g35610                        <---------ARR11(3)   --------->ICU4          --------->ZAT18                           <---------GLK1(1)     <---------YAB1          --------->At4g35610              --------->YAB1                <---------ARR11(3) -------At4g35610                       <----------DOF2           <----------DOF2  --------->ARR11(3)   agatgatgagggagcacaactccttgaagatgctcaaaaactctttgataatggagatcacatcaaggctttggagataattgaagatttgattttagtc  24885500  Previous    Next  AGI:  At5g61930.1    Description:  APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3). Identical to APO protein 3, mitochondrial precursor (APO3) [Arabidopsis Thaliana] (GB:Q9FH50;GB:Q94JX7); similar to APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) [Arabidopsis thaliana] (TAIR:AT1G64810.2); similar to APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) [Arabidopsis thaliana] (TAIR:AT1G64810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64441.1); contains InterPro domain Protein of unknown function DUF794, plant (InterPro:IPR008512) Range:  from: 24883301    to: 24885047    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61940.1    Description:  ubiquitin carboxyl-terminal hydrolase-related. similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT5G51530.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT5G61950.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G52450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62486.1); contains InterPro domain Protein of unknown function DUF627 (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Protein of unknown funct Range:  from: 24885381    to: 24889943    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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