Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               ---------->DOF2                                        <---------ARR14(2)                                        --------->ARR14(2)                                        <---------ARR11(1)                                      <----            ---------->DOF2             --------->GLK1(2)                                       -----       <---------ZAT6                   ------->TEIL                                <---------YAB1  --------->YAB1                       <---------GLK1(2)                         <------ZmHOX2a(2) ----->ANAC58                          <---------ARR14(1)                       --------->ARR11(3) <- ----->ANAC58              --------->At4g35610            --------->ZAT14       <---------ARR11(3) -- ----->ANAC46    --------->ZAT18       <---------CCA1(2)  <---------ZAT14<---------TOE2(3)   <-------   cgaatcagagtgttcaaagtgaacaaatcagataacaatccgaatctcaaagcttgacaatgcagagtcttgactaatgtaagatcaccattcttctttg  24848400                                                              --------->HSFB2a(2)                                                      <-----------HVH21                                                     --------->bZIP60(2)                                                     --------->TGA1a                                                     --------->DEAR3(1)                                                     <---------TGA1a                                  --------->GLK1(2)  <---------bZIP60(1)                        <----    --------->ANAC46       --------->ALFIN1          --------->bZIP60(1)                       <-----    --------->ANAC58   ---------->DOF2    <------ZmHOX2a(1)   <---------HSFB2a(2)              ------    --------->ANAC58   ========================================bZIP_DOF                       <------ -----At4g35610  ==============================================bZIP_DOF                       <------ ---->At4g35610  ---------->DOF2  --------->ARR14(2) <---------bZIP60(2)                     -------- --------ZAT18 --------->ANAC58   <---------ARR14(2) <---------DEAR3(1)                     <-------- ------->ZAT18 --------->ANAC58  <---------GLK1(1)   --------->O2                          ---------- ---DOF2       --------->ANAC46  --------->GLK1(1)   <---------O2        <-----------------------TaNAC69(2)   ctgcacaagccttgaatacgaaagggaaagtgtggaaatctggaggaacagagcgacgtcgcatctcgacgaagaaacgtttagaagacagagacgacgg  24848500       --------->ZAT18      <---------ANAC58      ----------->GT1--------->YAB1      <---------ANAC58  ------>ZmHOX2a(2)     <---------------AtSPL8     --------------->AtSPL8                                                           --------->ANAC58     --------------->AtSPL3                                                      <---------At4g35610     <-----------------------TaNAC69(2)                                          --------->ZAT2 -----At4g35610      -------->HAHB4                                              --------->At4g35610- ----DEAR3(2)       <---------ATHB12                                           <---------CCA1(2)    < >NtERF2            --------->ICU4                                           <---------ANAC58      -- ---RAP2.3(2)       <---------YAB1                                           <---------ANAC55(2)   -- ---DEAR3(1)     ------>ZmHOX2a(1)                                           <---------ANAC46      <- ->RAP2.6(3)     ==============HOX2a_HOX2a                 ------->TEIL      --------->ANAC55(2)----- -ATERF1(1)  <---------ARR14(2)                            --------->GLK1(2) <---------ANAC58 ------>ZmHOX2a(1) ->HVH21     --------->ARR14(2)                         <---------YAB1--------->ZAT14 --------->ANAC58   ctcatgaagcgtacaaatcctaatgatcgtattgaaacaaaacgttgaagggtttgtgatgaatctgaaaactgaagtcgcgtagctcacgacctccttc  24848600            ----------->GT1           <---------DEAR3(1)        --------->DEAR3(1)       <-----------RAV1(2)    <------NtERF2   <---------ATERF1(1)   ------>NtERF2  --------->DEAR3(1)  ----------->HVH21                                                                  --------->HSFB2a(2) --------->ORA47(2)                                                            --------->GLK1(2) --------->RAP2.3(1)                                                           <---------ARR14(2) --------->ATERF1(1)                                                           --------->ARR14(2) <------NtERF2                                                                <---------GLK1(2) --------->DEAR3(2)                                                     <---------YAB1 <------NtERF2 ----->NtERF2                         <------ZmHOX2a(1)                --------->TOE2(3) ---------ATERF1(1)            <---------ANAC46                       <---------ICU4 <---------ATERF1(2) ------->ANAC46               <---------------------WRI1              --------->ATHB12--------->LBD16 ------->DEAR3(1)        --------->ALFIN1                             --------->YAB1 --------->ATERF1(2) --------DEAR3(1)        ----------->HVH21                           --------->ICU4 <---------LBD16 ------>HVH21--------->At5g28300      <<<<<<<<<<<<<<<<<LFY           <---------ATHB12<---------HSFB2a(2)   gacgccgacgcagacggtgaaatagaggtgatggcgaagaggacattggcgaaaacagagttttgtttgaaatcattagagattctgccggaagtgatga  24848700                                       --------->ZAT2                                       <---------At4g35610                                   --------->ANAC46                               >>>>>>>>>>WRKY26                                   <---------ALFIN1                     <---------YAB1                                  <---------REM1(2)              <---------YAB1<-------GAMYB                                  <---------ZAT14       --------->MYB46(3)--------->WOX13(1)   ------                  <---------At4g35610  --------->At4g35610     --------->YAB1  <---------At4g35610 --        ------->TEIL              --------->ZAT14 --------->CCA1(2)   <-----------GT1 ---------->DOF2     --------->ANAC58     <---------TOE1(3)      --------->ARR11(3)  --------->AHL20(2)   <---------ARR11(3)     --------->ANAC58     <---------TOE2(3)      <---------ARR11(3)  <---------AHL20(2)   --------->ARR11(3)   attgggcatgaaactgatgcagatgtttaagggttctacacagcttcaagagatatgaacaactactataatttatcattcagttgatcaaagagcttca  24848800        ---------->DOF2     ------>ZmHOX2a(1)   ------>ZmHOX2a(2)  <------ZmHOX2a(2) --------->ARR14(2) <---------ARR11(3) <---------GLK1(2) --------->ARR14(3) <---------ARR14(3)              --------->TOE1(2)                                              ----- --------->AGP1                 <---------MYB52(2)                                       ------>MYB83 --------->ARR11(3)    ---------->DOF2                                                   ------>MYB46(1) <---------ARR14(2)<---------------AGL15                            --------->ICU4     <---------MYB46(2) --->REM1(1)       <----------DOF2--------->MYB52(1)     <---------AHL20(2)            <---------MYB111(2) --------->ARR10   --------------->AGL15    --------->YAB1        --------->CCA1(2)   --------->ANAC46   ccagatcctctaaagttttctcttttaaagggaaacgaacgatttagcataaaaactattttcttaagaaatgagtgtttatggactcaccaaactacta  24848900                           <-----------GT1                    <---------------AGL15                        ----------->GT1                       --------------->AGL15                    --------->ARR11(3)                       ----------------->AGL3                    --------->AGP1                          ------------------------>ANAC81                   --------->At4g35610                     --------->ARR14(2)                 --------->YAB1                            <---------ARR14(2)  ---------->DOF2                <---------ATHB12                   <----------DOF2 ---------->DOF2--------->At4g35610              --------->WOX13(1)     --------->ZAT14       --------->GLK1(2)--------->ANAC58            ------------>CBF         <---------ZAT14      <---------ARR14(1)--------->ANAC58    --------->GLK1(2)<------ZmHOX2a(2)<---------ALFIN1  <---------MYB59   --------->MYB52(1) ----->DOF2--------->GLK1(2)<-------TEIL      ----------->HVH21<---------------AGL15                -   aagaagaatcaagaatcaatcagatcaagttacattttctacactcgaatgacctttaccgaatccaaaaaaaggaaaacggaaagctcaagtttttttt  24849000                                                            <---------DAG2                                                            <----------DOF2                                                           <---------ANAC58                                                       <---------ANAC58                                                  <------MYB46(1)                                                  <------MYB83                  --------->ARR11(3)                                                 --------->MYB59     <---------ATHB12  <-----------TGA1                   <---------ZAT18   <---------ANAC58         <---------ARR11(3) <---------bZIP60(1)       ------->TEIL   --------->ANAC46 <---------ANAC58     <---------GLK1(2)<--- --------->bZIP60(1)      <---------CCA1(2)----------->RAV1(1)    <---------AHL20(2)<-----------GT1 --------->ID1       <-----------GT1 --------->ZAT14  --------->MYB52(2)      ----------->ARR10 <----   ttgtcgtcaccatcaaggagttttcactgtatctctctgtgaacacaacattaggtttcttgctttttttaatcaagggcaagatttttcttcatagctt  24849100                                                          ------>ZmHOX2a(1)                                                     --------->KAN4(2)                      --------->LBD16                <---------ARR14(2)                     --------->HSFB2a(2)             <---------GLK1(2)                    <---------LBD16                 <---------HSFB2a(1)                 <---------ANAC58                   --------->HSFB2a(1)          --------->ANAC58                          --------->HSFC1(2)          --------->ANAC58                          <---------HSFC1(2)       <---------SPL7<---------ANAC58              <---------KAN4(2)     --------->ANAC58<---------HSFB2a(2)       <---------HSFB2a(2)     <---------------AtSPL3                   <---------LBD16               <---------ARR11(3)     --------->ANAC58<---------ANAC58        --------->ALFIN1               --------->ARR11(3)      < ------ANAC46    <---------ANAC58 <----------DOF2  ----------->ARR10  <----------DOF2      <---------ANAC58 ---TEIL <-------TEIL<---------ANAC46       --------->ALFIN1      <-----------GT1          <---------ANAC58   cgtagacaaggtacgaaatgcttgcggaaggaatgactttgaagaagttggggaagattcctctgtaaaaaccttttagaccttcgcctcttagcgtttt  24849200                                             <---------At4g35610                                            <---------YAB1                                  --------->ZAT2  <---------YAB1                           --------->At4g35610  --------->YAB1                             >>>>>>>>>GATA-1                <---------ANAC58  <---------At4g35610      <---------ZAT14      <----------ID1                <---------ANAC58  --------->At4g35610      --------->ZAT14 --------->AtMYB61 ---------GLK1(2)          <---------At4g35610 <---------YAB1            >>>>>>>>>>MYB80 ----------->GT1   cagaaactcttggcccatgcttgtttttgagctatcagcttgcattctgatgataaatgactaaactcagtttcaaaccaaaacgaagaaatagataaac  24849300  Previous    Next  AGI:  At5g61800.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68404.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 24847213    to: 24848779    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61810.1    Description:  mitochondrial substrate carrier family protein. similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G51050.1); similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G07320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83157.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68405.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier prote Range:  from: 24848845    to: 24851128    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version