Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------ZAT18   --------->ZAT14   <---------ZAT14                                     <------ZmHOX2a(2)   --------->ZAT18                               --------->CCA1(2) ---------ANAC58                                --------->ARR11(3)                          --------- ---------ANAC46                       --------------->AGL15                            --------->GLK1(1) ---------ANAC58                       <---------------AGL15                       --------->ALFIN1 --->ICU4                             ----------------->AGL3                     <---------ANAC46 ---TOE2(3)     --------->At5g28300   ----------------->AGL2                   --------->ZAT14 ->YAB1  --------->ANAC46   --------->ICU4      <---------ARR14(2)             <---------ZAT14   ttgagtgcaatacatcacagtaagtaagtagtaattgaattccaaatacagatatagatcagaacgatacactaactacaatgcagtgggaattcaaaga  24846600                                                                              --------->TOE1(3)                                                   --------->DAG2            ----------------->AGL2                                                 ---------->DOF2             ----------->RAV1(2)                 --------->YAB1           ------>NtERF2                     --------->GLK1(2)                 <---------ICU4          --------->RAP2.6(2)               <---------ARR14(2)                 <-----------GT1        --------->DEAR3(1)                 <---------GLK1(2)     <-----------GT1                   --------->At4g35610                 --------->ARR14(2) --------->AHL20(2)<---------YAB1      <---------At4g35610              --------->ANAC46       ------ --------->YAB1 <---------ATHB12   <------ZmHOX2a(2)          <---------TOE1(2)                <----- ->DOF2         --------->ICU4    <---------ARR14(2)   <-------TEIL<-------TEIL                ------   caataatataccttcgtaatcactattcttcgaaacgatccagcggccatcaaaaggctcatcgaacgattcatacagaacctgaaacagaaacgagaat  24846700                                                   ---------->DOF2                                               ------>ZmHOX2a(2)                                               ======================HOX2a_HOX2a                                              <------ZmHOX2a(2)                                              =======================HOX2a_HOX2a                                             <---------ARR14(2)                                     --------->ARR11(3)                             ------>ZmHOX2a(2)--------->GLK1(1)             <---------At5g28300      ------>MYB46(1)     --------->YAB1     --------->ARR14(2)            <-----------GT1      ------>MYB83        --------->ATHB12   --------->AGP1          ----------->GT1      --------->MYB52(1) <---------YAB1      --------->ARR11(3)    --------->GLK1(2)    --------->AtMYB61    --------->ICU4     <---------CCA1(2)    <---------HSFC1(2)    <-----------HVH21 --->ARR14(2)            <---------ATHB12<---------LBD16         <---------HSFB2a(1)  ------>ZmHOX2a(2) ----ARR14(2)   --------->At4g35610  <---------ARR11(3)       <------ZmHOX2a(1) <---------MYB52(1)--- --->GLK1(2)    <---------At4g35610 <---------CCA1(2)         ===============================HOX2a_HOX2a   ccaaaaccaaacgaactcagctaaacaatgatcgatctaaatcttcggatctacaaagaacagaggaagaatcgaaattaccgtttgatcgtcacagtag  24846800                  ---------->DOF2                --------->ANAC58                --------->ANAC58          --------->At5g28300           --------->ANAC58              ----------->GT1           --------->ANAC58             --------->ANAC58      --------->HSFB2a(2)               --------->ANAC55(1)      <---------HSFC1(1)                --------->ANAC46                --------->GLK1(2)      <---------HSFB2a(2)               --------->ANAC58               --------->ARR14(2)      --------->HSFC1(1)                <---------ANAC55(2)        <---------LBD16   --------->GLK1(2)          --------->ANAC58                     <---------HSFB2a(2)           <--- --------->HSFC1(2)           ----------->GT1                      --------->HSFB2a(2)         ------ <---------HSFC1(2)           --------->ANAC58          <---------MYB52(1)            ---------->DOF2 ------->DOF2 --------->MYB52(1)       <---------LBD16 <-------GAMYB   <---------GLK1(2)    <--------   caaagcttctggaacgaaacgaaagctaagagaagcaaaaacacggaaaatagttgccgttgtctcattctcggaatctctaaaatgcaaaaggaaacct  24846900        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      --------->ARR11(3)              ==============================HOX2a_HOX2a      <---------AGP1                  ------>ZmHOX2a(2)      --------->AGP1                <---------AGP1                         --------->ANAC55(2)    ---      <---------ARR11(3)            <---------ARR14(2)              ----------->GT1               ---     <---------CCA1(2)     <------NtERF2                        ---------->DOF2        --------->ARR14(2) --------RAV1(2)          --------->LBD16                    <------ZmHOX2a(1)------->TEIL        <-- --->TOE2(3)            <---------LBD16                 ----------->HVH21  <---------ANAC55(2)    <-- -GLK1(1)      ----------->GT1      --------->ARR14(2)--------->O2 --------->DAG2 <-----------GT1----   caggcttagatctaaatcggtgataagccggagaagtagatcggaacaaaaatccctcgtgaaggagaaagagtgatatgtatttttcggtttctctgaa  24847000                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                 --------->MYB52(1) <                                                                               <---------MYB52(2)   -                                                                              <---------At4g35610   -                                                                        --------->ANAC58            <                                                                   --------->ANAC46            ------                                                                   --------->ANAC58------------>CBF =                   --------->WRKY12                         <---------CCA1(2) --------->At4g35610   -     --------->ARR11(3)                                  <---------ATHB12    <-----------ARR10 ------     <---------AHL20(1)   <-----------HVH21             ------>MYB83    --------->O2   <---------ATHB12  <---------AHL20(2)   <---------LBD16                  ------>MYB46(1) --------->ANAC46<---------ICU4  --------->AHL20(2) <---------ARR14(2)                --------->WOX13(1) --------->ANAC46     ------ ------>AHL20(2)   --------->WRKY38(1)                --------->MYB46(3)--------->ANAC58--------->YAB1 ------>AHL20(1) *TSS--------->ARR14(2)     ---------->ID1--------->YAB1<---------O2  ------>MYB83 <- -------AHL20(1) --------->LBD16          <-----------RAV1(1)      --------->ANAC58--------->MYB46(3) -------AHL20(2)<---------ANAC46--------->ALFIN1      --------->AtMYB61------>NtERF2 --------->WOX13(1) ----->AHL20(2)<---------LBD16<---------ANAC46       ------------>CBF <---------ALFIN1------>MYB46(1)   taaattatatattcaatcccgtagacccggtcgagtgtgtcattttgttgtttccaccaatcaaatctctcgccacgcgaagctaaccaatcataacagg  24847100         ---------->DOF2       --------->YAB1     --------->AtLEC2    --------->WOX13(1) <-----------TGA1 <-----------HVH21 ---------TGA1a -------->bZIP60(2) ---------O2                                        ------->TEIL -------->TGA1a                                     <-------TEIL -------->ANAC58                                    --------------->AtSPL3 -------->ANAC58                                    --------->SPL7 -------->ANAC46            --------->ZAT14       --------->TOE2(2) ---------ANAC55(2)         <---------ZAT18       --------->TOE1(2) -------->bZIP60(1)         --------->ZAT18      --------->ANAC55(2) -------->ANAC55(2)         <-------TEIL         --------->ANAC46 ---------bZIP60(1)      <---------ANAC58       --------------->AtSPL8 --->ANAC58              <---------ANAC46       <---------------AtSPL3 ===================bZIP_DOF<---------ZAT14     --------------->AtSPL3 -------->O2             <---------ANAC58       <---------------AtSPL8 --->ANAC46      <---------ARR11(3)     <-----------GT1 <-------TEIL                       ---------- --->ANAC58   <---------ZAT18     <---------MYB52(1)<---------TOE1(2)               --------->ATHB12 ----------STF1 <---------ZAT2  ----------->GT1 <-------TEIL    <-----------GT1    <---------YAB1   ccacgtcattcaaaagcgagctcttctacgtgcactgttattttgctatatacgtacgtacacatttaacagctagttgagcatagttattgggcctggg  24847200                                        --------->YAB1             <---------AHL20(2)                                     --------->TOE2(3)            --------->AHL20(2)                               <---------MYB46(3)                 <---------AHL20(2)                              <---------WOX13(1)              --------->AHL20(2)                            <---------ICU4               <---------AHL20(2)                            <--------ATHB1              --------->AHL20(2)                            -------->HAHB4              <---------AHL20(2)                            --------->YAB1    --------->YAB1  <---------YAB1                            --------->ATHB12  <---------ICU4  <---------AHL20(2)                           <---------YAB1    <---------YAB1  <---------AHL20(2)   <---------TOE2(3)       <---------ATHB12  <---------ATHB12--------->AHL20(2)         <----------DOF2  ---------->DOF2          --------->ICU4    --------->ICU4 --------->YAB1      --------->YAB1 ->RAV1(2)       ------>ZmHOX2a(1)<-----------GT1   <---------AHL20(2)         <---------YAB1       -   ccattaaagtttttaagtccttactcttaatgattgttacattagtaatcatagtttattaattttaattaaatccaaactatgacaaaactttactaaa  24847300                  <---------ANAC58                                                                  <                  <---------ANAC58                                                              <----               <----------DOF2               --------->TOE1(3)                            --------->YAB1        <<<<<<<<<TBF1                        --------->TOE2(3) <---------CCA1(2)          --------->AtMYB61 ---------->RAV1(1)             <---------YAB1            ------>ZmHOX2a(1)     <-------TEIL    <----   tccaacattcttcttcactttcttgtctctgtctattatttctctaaccttaactacttcctcccatctctctgcgtttgcatacatttccaccataact  24847400                                                                                            <--------                                                                                           >>>>>>>>>MYB98                                                                                          --------->MYB52(1)                                                           ------>ZmHOX2a(2)            <---------MYB46(2)                                                          <------ZmHOX2a(2)          ------->GAMYB---                                                      ------>NtERF2               <---------ARR14(2)                     --------->ANAC58                 --------->LBD16             --------->ARR14(2)                 --------->HSFB2a(2)           <----------DOF2             <---------ARR14(2)   -----        ------>ZmHOX2a(1) --------->ANAC46 <---------RAP2.3(2)             <---------GLK1(2)---------    --------->ANAC46 --------->ANAC58      <---------RAP2.6(2)         --------->LBD16------>NtERF2 -----------GT1  <---------HSFB2a(2)      <---------LBD16<---------ARR11(3)--------->ARR14(2) ------- -----DAG2      <---------LBD16 <---------WRKY18(1)  --------->ANAC46 <---------ANAC46--------->LBD16 ------DOF2    <---------LBD16 --------->WRKY38(1)  <---------LBD16  <---------LBD16--------->MYB46(3)   ttatacactcctccatcttcgggactcaacgccttgactcgatttgcggctttctccgcgatctctatgttcccgtggattctgcatccgcctaacaaac  24847500  Previous    Next  AGI:  At5g61790.1    Description:  calnexin 1 (CNX1). Identical to Calnexin homolog 1 precursor (CNX1) [Arabidopsis Thaliana] (GB:P29402); similar to calnexin, putative [Arabidopsis thaliana] (TAIR:AT5G07340.1); similar to calnexin [Glycine max] (GB:BAD81043.1); similar to putative papillar cell-specific calnexin [Brassica napus] (GB:AAK84429.1); similar to Calnexin homolog precursor (GB:Q39817); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580); contains InterPro domain Concanavalin A-like lec Range:  from: 24844328    to: 24847017    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61800.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68404.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 24847213    to: 24848779    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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