Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------AHL20(2)                                                     --------->AHL20(2)         <---------ICU4                            --------->AHL20(2)         <---------AHL20(1)                      <---------AHL20(2)         --------->AHL20(1)                      --------->AHL20(2)         <---------ARR11(3)                    --------->AHL20(2)         --------->ARR11(3)                <---------AHL20(2)  ----------->GT1                          --------->AHL20(2) ------AHL20(2)                         --------->YAB1 ----->AHL20(2)                      <---------AHL20(2)<---------AHL20(2)                           - --AHL20(2)                          --------->AHL20(2)--------->AHL20(2)                  ------>ZmHOX2a(1) ->AHL20(2)                          --------->YAB1<---------AHL20(2)         --------->DOF5.7(2)  -- >AHL20(1)                      <-------TEIL  --------->AHL20(1)              <---------MYB52(1)   <- -AHL20(2)                 --------->AHL20(2) <---------AHL20(1)             --------->TOE1(3)    --- >AHL20(2)             <---------AHL20(2)<---------AHL20(2)                  --------->TOE2(3)    <-- -AHL20(1)             --------->AHL20(2)--------->AHL20(2)<-----------GT1<---------DOF5.7(2) -------   tatatagttaatattttccaacaaattaaaaatatacatttatattaatatatatatatatatactattgttttggtaacgttatctagtttcctatcaa  24838100     --------->AHL20(2)     <---------AHL20(2) -------->AHL20(2) ------->AHL20(2)                                                      ---------->DOF2 --------AHL20(2)                                                --------->YAB1 ------>AHL20(2)  --------->YAB1        <-----------GT1         <---------AHL20(2) -------AHL20(1) --------->AHL20(2)  <---------MYB46(3)         <---------YAB1 <-------TEIL -->YAB1       --------->TOE2(3)<-------TEIL      <---------ANAC46 <---------YAB1            <-------   aataattttaaatgttacattaaaaatacaaaaatacatttgttacaaaatggtttgtattgctatattataagaaagaaatacatagaattgagttgtt  24838200                            ------->TEIL                                      <---------DAG2                         <---------REM1(1)                                    <----------DOF2                        <---------TOE2(3)                               --------->ANAC46                      <---------AHL20(2)         <----------DOF2      <---------ALFIN1                     --------->AHL20(2)          <---------DAG2      --------->ANAC46   --------->DAG2 --MYB46(3)       --------->ATHB12   ---------->DOF2               <-----------GT1     ---------->DOF2   gacaaaaaaaaacatagaattgatttaatgtagcttaaaaaaagaacataacttttttaaaatttgttttcaccacataacttttttaaaaaagtttaca  24838300                                           <---------AHL20(2)                                           --------->AHL20(2)                                       --------->AHL20(2)                                         <--                                       --------->AHL20(1)                                        ----                                       <---------AHL20(2)                                     -------                              --------->ZAT14                                                <-------                              <---------ZAT14    <---------AHL20(2)                          <-------                              --------->ZAT18   --------->AHL20(2)                           --------                  ----------->GT1     --------->AHL20(2)         <-----------GT1    <---------AHL20(2)                ---------->DOF2 ----------->GT1 <---------AHL20(2)                 --------->AHL20(2)    <---------CCA1(2)--------->CCA1(2)<---------AHL20(2)        --------->AHL20(2) <---------AHL20(2)   aaacccatatttttctaagaaagataaacaagtgtagtaaataatttaaattttttttcttcaaaataaactattttctgcgaaattaaatctaaaatat  24838400       ---------->DOF2                                       --------->ARR14(2) -------AHL20(2)         ---------->DOF2                    --------->RVE1(1) ----->AHL20(2)    <---------AHL20(2)         --------------->AGL15          <---------ICU4 -->AHL20(2)      <---------AHL20(2)         <---------ANAC55(2)   --------->GLK1(1)------>ZmHOX2a(1) --AHL20(2)       --------->AHL20(2)       --------->AHL20(2)<---------ARR14(2)     *TSS --AHL20(1) ----------->GT1        ----------->GT1        --------->YAB1    --------->ICU4          < ->AHL20(1)<---------------AtSPL8 <---------TOE2(3)    --------->YAB1     --------->YAB1           --   ttaatggcataaagaggtaaataaatgaaaagtattagggtaaaattacatatataagtataatatccgatttctctcatgatgtccttgtttatatttc  24838500                                                                   --------->AHL20(2)                                                                 <----------DOF2            --------->ZAT14                                 <---------MYB52(1)            <---------ZAT18                              <-------TEIL            <---------ZAT14                              ------>ZmHOX2a(2)         ------>ZmHOX2a(1)                              <------ZmHOX2a(2)         --------->At4g35610    --------->At4g35610    --------->ARR14(2)   --------->AtMYB61            <---------ZAT2         <---------ARR11(3)   <---------ALFIN1             --------->ZAT2         --------->AGP1 ---------ALFIN1                <---------At4g35610    <---------ARR14(2)                   <-------- ------->MYB46(3)       <<<<<<<<<TBF1                 <---------GLK1(1)        <----------DOF2      <   atccacctctcctctgcacaatcttcttcttctcagctctctctctctcaatctcgagatccgttctctttaaatctgtctctttctcttcaatctcatt  24838600                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                               <-----                                             --------->YAB1                                    ------                                            <---------YAB1                                     ------                                          --------->YAB1             --------->ANAC55(2)       ------                      --------->WOX13(1)  <---------ICU4            <---------TOE2(3)          <-----                    <------ZmHOX2a(2)    <---------ATHB12          <-----------GT1            <------     <---------At4g35610               --------->WOX13(1)        <---------WOX13(1)        <---------At4g35610 -YAB1   <----------DOF2       <---------WOX13(1)             <---------YAB1    <---------AHL20(2) ----------DOF2    --------->ARR11(3)<---------ATHB12    <---------TOE2(3)      --------->AHL20(2)   gtctttgagctcttttgttgagatcaatctcagattgaaatcaatcatcatagacaattaagttttgatttacgttttttttttaatttcttcatcagat  24838700        --------------->AGL15        <---------------AGL15       ----------------->AGL2       ----------------->AGL3       <-----------------AG       ----------------->AG       ----------------->AGL1       <-----------------AGL1     <-----------GT1                           ------>ZmHOX2a(2)                                    < -->ZmHOX2a(2)                               --------->ARR11(3)                                  ---- --ZmHOX2a(2)                                <---------AGP1                                     <---- ----AGP1                                    --------->AGP1                                    ------ ----ARR14(2)                        <---------ICU4                                          ======== --->AGP1   --------->MYB52(1)      <---------YAB1                                           ======== --->ARR14(2)                <---------KAN4(2)<------ZmHOX2a(2)                              ------>ZmHOX2a(1) --->ARR11(3)            <---------TOE2(3)  <---------CCA1(2)                                ======== ----ARR11(3)  ----------->GT1   <-------TEIL<---------ARR11(3)                       <-------TEIL  - ---CCA1(2)<---------ATHB12<---------MYB52(1)<---------ARR14(2)               ------->TEIL --------->YAB1   ctagtttttaccaataacggataaattcaggtatgttcatcatcgtagatctatctctgtctattgattcaaattggatgtatttagattcaatcctgat  24838800          <---------DAG2          <----------DOF2         <---------ANAC58         <---------ANAC58         <------MYB83        ---------->ID1            <------MYB46(1)   <----------DOF2              <---------WOX13(1)  ------>ZmHOX2a(2)           --------->ATHB12 ---------ARR11(3)           <---------YAB1 -->ZmHOX2a(2)         <---------TOE1(2) -----At4g35610     ------>ZmHOX2a(2)                                           <---------ARR14(2) --->ARR14(2)       --------->ANAC58               <-----------GT1         <---------ZAT6 ==========================HOX2a_HOX2a        <---------MYB52(1)           <---------ANAC46 =========================HOX2a_HOX2a    --------->GLK1(2)               <---------ANAC46 ========HOX2a_HOX2a--------->ANAC58     <---------ARR14(2)            <---------ZAT14 -------->ARR11(3) <------ZmHOX2a(2)     --------->ARR14(2)            --------->ZAT14    ------->TEIL   ctgatcttttggctttttgcgatcgcaagttttgattggtgagaattcgtttttttctagctcgatcgaactctgtagtgtagatcgagacgaatgtaga  24838900                                               ------->MYC3                            <-------TEIL                                               <-------MYC3                        <---------YAB1               ----------->GT1               ------->TEIL                        <---------ANAC46 <---------ANAC46                           <---------ANAC58                   <---------ZAT14 <---------ANAC58                     <---------WOX13(1)                <---------ANAC46 <---------ANAC55(2)               <---------YAB1                       <---------ANAC58  <---------WOX13(1) <---------ANAC58                  <---------AHL20(2)                   <---------ANAC58--------->ATHB12 --------->ANAC55(2)          <---------YAB1<---------ANAC58 ---------->ID1    <-------GAMYB   ------   gtttcgtgattcgtttttggttatatgatgttatgttttaattgatgcatgtgagttttttttgttttttttttgtgtgtgtgttgtgattcattgatct  24839000  Previous    Next  AGI:  At5g61780.1    Description:  tudor domain-containing protein / nuclease family protein. similar to tudor domain-containing protein / nuclease family protein [Arabidopsis thaliana] (TAIR:AT5G07350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23079.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83456.1); similar to 110 kDa 4SNc-Tudor domain protein [Pisum sativum] (GB:BAC06184.1); contains InterPro domain Staphylococcus nuclease subtype; (InterPro:IPR006022); contains InterPro domain Staphylococcal nuclease (SNase-like), OB-fold; (InterPro:IPR016071); contains InterPro domain Tudor; (InterPro:IPR002999); contains InterPro domain RNA-induced s Range:  from: 24838484    to: 24844195    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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