Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->ARR11(3)                                         <---------ARR11(3)            --------->ZAT18                                     ---------->DOF2          --------->TOE2(3)                                  --------->AHL20(2)         ----------->RAV1(2)                -----                                 --------->AHL20(2)         -------->P --------->ZAT14          -----                              --------->AHL20(2)          ------>ZmHOX2a(1)                     <----     <---------YAB1          <---------AHL20(2)    <---------ALFIN1    <---------ZAT18          -----     --------->ICU4          --------->AHL20(2) --------->ZAT6--------->TOE1(3)           -----------   cttggtcatgactgtgagaaaccaattctaaataaataaaaaagacatttccactacctcctaacctgaatagtgaacacaattgaatcaaattgaaaaa  24738800                                                 --------->AHL20(2)                                          <---------ANAC55(2)                                          <---------ANAC58                                          <---------ANAC58                                          --------->ANAC55(2)                                          <---------ANAC46                                 <---------ATHB12<---------AHL20(2)                             <---------------AGL15                             --------------->AGL15                            ----------------->AGL1   --------->GLK1(1)        <-----------------AG<---------AHL20(2)   <---------GLK1(1)        <-----------------AGL1 ---->GLK1(2)               ----------------->AG--------->AHL20(2)--------->GLK1(1) ---->ARR14(2)              ----------------->AGL2            --------->YAB1 -----ARR14(2)              <-----------------AGL2           <---------ATHB12                  <----- ---->ARR11(3)       --------->ANAC58 <---------ANAC58     --------->WOX13(1)    --------->AHL20(2) >GT1 --------->YAB1 --------->ANAC58 <---------ANAC58   --------->WRKY18(1)     <---------AHL20(2)   tctggatatcaaaattaggcgaaacccaattcccaataaggcatgcgtgattaaattcagtcaatcagagctctaaaaaacatttttttaaacagaagga  24738900                                        --------->ANAC58                                        --------->ANAC58                    <---------At4g35610 --------->ANAC46                   <---------DEAR3(1) <---------ALFIN1                                             --                   <---------MYB46(3)------>MYB46(1)                                              <--                  <---------ORA47(1) ------>MYB83                                             ------>ZmHOX2a(1)          <---------ANAC58          <---------ALFIN1                    ------->MYC3         --------          <---------ANAC58         ------->GAMYB                        <-------MYC3        ------>ZmHOX2a(2) -ZmHOX2a(1)<---------MYB52(1)  <-----------GT1                <---------YAB1         <----------DOF2   gaagacttacttccgttttggccggtgatgaaattaacccactcgccaaactcaatctggagattactatggcacatgaaattctcaactttgatcctca  24739000                                                                   <---------DAG2                                                                   <----------DOF2                                                                  <---------ANAC58                                                                  <---------ANAC58                                                           <---------At5g28300            <---------HSFB2a(2)                           <-----------GT1       ----------->HVH21                              <-----------ARR10       --------->ANAC46                               --------->ARR14(2) ------->GLK1(2)                    --------->ATHB12  <---------GLK1(2) -------GLK1(2)            <---------YAB1             <---------ARR11(3) ->TOE2(3)  --------->HSFB2a(2)   ------->TEIL   ----------->RAV1(1)          >>>>>>>ZML2          <-   gaatcgaacccgacccagaacgttgtttgatgaatgaatcactggctcgagcaccagattttaccatggcttttcgcgttctagggtttcttctctcact  24739100                                                                               <---------ZAT14                                                                            <---------ANAC55(2)                                                                            <---------ANAC58                                                                            <---------ANAC58                                                                            <---------ANAC46        <                                                               <---------YAB1  --------->ZAT18     <-                                                            <---------WOX13(1) --------->ZAT14     --                                                   <------NtERF2        <-----------HVH21        <---                                                  --------->LBD16      --------->ANAC46    --------->LBD16           --------->YAB1                        <---------ANAC46 *TSS------->TEIL         --------->At4g35610 ------GAMYB                        ----------->HVH21---------->DOF2  --------->SPL7       <---------At4g35610   cggttgaaacaaattagaatagagcaagttccattgatgcgactgcttagggcgggaaagagattgctattgtacgtcgcgtgtactatattccgctgtc  24739200                 <---------ARR11(3)             --------->YAB1          ------>MYB46(1)            --------->ICU4     ----------->HVH21          --------->YAB1   ------>ZmHOX2a(2)         --------->ICU4  --------->AGP1      <---------TOE1(1)  <---------ARR14(3)      <---------TOE2(1)  --------->ARR14(3)     --------->SPL7      <---------ARR14(2)   <---------SPL7--------->ARR11(3)<---------MYB59   --------->TOE1(2)     --------->ARR14(2) --------------->AtSPL3  <---------ARR11(3) ---------At5g28300------>ZmHOX2a(2) ------>MYB83 ----------GT1 <---------YAB1  <---------YAB1                 <-----------------AGL1  <---------MYB52(1) ---------------->SPL14  --------->ARR11(3)          ---------->DOF2           --------->At4g35610 -------DOF2<---------YAB1<------ZmHOX2a(2)       <----------DOF2           <---------MYB52(1)   tttaccgtacgatgatgatgatctcgagatcttatgaccgaacacaaatgggccttaaagttccccctaatatggcccattagctacagttgtttttagc  24739300                                                              --------->TOE2(3)                                                              --------->YAB1          --------->ZAT6                                 --------->ZAT18              --------->TOE1(3)    <---------AHL20(2)                                 --------->ZAT14            <---------ARR11(3)    --------->AHL20(2)                                 <---------ZAT14         <---------AHL20(2)       <---------AHL20(2)                     --------->ETT(2)                    --------->AHL20(2)    --------->AHL20(2)                     <---------WRKY45                   --------->AHL20(2)    --------->AHL20(2)                     <---------WRKY38(1)            --------->AHL20(1)      --------->YAB1                     <---------WRKY12               --------->AHL20(2)    <---------AHL20(2)                    --------->WRKY18(1)             <---------AHL20(2)    --------->AHL20(2)              <----------DOF2 <---------ZAT6       --------->AHL20(2)    --------->AHL20(2)  --------        <----------DOF2 --------->ZAT6       ----------->GT1--------->ARR11(3)<---------AHL20(2)        <---------DAG2----------->RAV1(1)  ---------->DOF2  <-----------ARR10<---------AHL20(1)   ccaatagaccctttttcttttggtcaacagtagtgttcactgtaagaaagaaaaaaaattaaaatcttaactaaattaaaataattttatactacaaaag  24739400                                  <---------ARR14(2)                                  --------->ARR14(2)                          <---------ARR11(3)                                --------->YAB1                    <---------AHL20(2)                         --------->AtLEC2                   --------->AHL20(2)                      --------->ARR11(3)                   <---------AHL20(2)                      <---------ARR11(3)                ----------->GT1   <---------ARR11(3) --------->LBD16--------->KAN4(2)         <---------At5g28300      --------->ARR11(3)--------->HSFB2a(2)    <---------ATHB12      <----------DOF2     <---------GLK1(2)         <---------HSFB2a(2)  ------>ZmHOX2a(1) -->DOF2<-----------GT1   --------->ARR11(3)       <---------LBD16------->TEIL   tgtatttgttttacggtgtgattaaatagattttcagatattgtgcataattttccggaaatatcatgcacattcctatcatgttcacgttgttcgattc  24739500                      --------->TOE2(3)                      ----------->GT1                                                <---------DAG2                      --------->TOE1(3)                             <---------MYB52(1)                     --------->ANAC46                 --------->ANAC58               <----------DOF2            <---------YAB1                            --------->ANAC58        --------->AHL20(2)           <---------AHL20(2)          <---------AHL20(2)         <---------ZAT6  <-----------GT1          --------->YAB1 --------->AHL20(2)           ----------->GT1   <---------DAG2          <---- <-------TEIL   <---------AHL20(2)  ----------->GT1   --------->ANAC46  <----------DOF2     <--------   aaatacattcgattataatttatacgttaaattatctatagttatttgtataaaacacgaaaaaactactgttactttttttatatactttttctgtttt  24739600                                          <-----------TGA1                                         --------->YAB1                                      <---------ICU4                                      -------->HAHB4                                      --------->YAB1                                     --------->ICU4                                <---------ANAC46                                ----------->GT1                                --------->ANAC55(2)                                          ------>ZmHOX2a(1)                                <---------ANAC58                                             <-------         <----------DOF2        <---------ANAC55(2)               <---------AHL20(2)        ---------    <---------WOX13(1)    --------->AHL20(1)                  --------->AHL20(2)         --------->ARR11(3)   >>>>>>>>>ARR2          <---------AHL20(1)                  <---------AHL20(2)         <-----------GT1 <---------YAB1           --------->AHL20(2)           <-----------GT1                   <---------ARR11(3) <---------AHL20(2)       <---------AHL20(2)        <---------ARR11(3)                --------->YAB1 -----AHL20(2)  --------->ZAT6  <---------ANAC58    --------->ARR11(3)                --------->AHL20(2) ----------------ANAC81  --------->AHL20(2)         <---------GLK1(2)                <---------ATHB12   aatttgattgtctttctaacactaaaattttatttcgtaataatcgtcattttagattttcaatataaatatttgataaaactttcaataatatccttat  24739700  Previous    Next  AGI:  At5g61460.1    Description:  MIM (HYPERSENSITIVE TO MMS, IRRADIATION AND MMC); ATP binding. similar to structural maintenance of chromosomes (SMC) family protein [Arabidopsis thaliana] (TAIR:AT5G07660.1); similar to hypothetical protein OsJ_027271 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43788.1); similar to hypothetical protein OsI_029391 [Oryza sativa (indica cultivar-group)] (GB:EAZ08159.1); similar to SMC6 protein [Oryza sativa] (GB:CAD59413.1); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395) Range:  from: 24731302    to: 24739166    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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