Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->WOX13(1)                                       --------->WRKY18(1)                             <---------AHL20(2)                             --------->AHL20(2)                                                   ---      <----------DOF2        --------->AHL20(1)                                                  ----   --------->GLK1(2)         <---------AHL20(1)       <---------AHL20(2)                         <---  <---------ARR11(3)         <---------ARR11(3)      --------->AHL20(2)                          ====  --------->ARR11(3)         --------->ARR11(3) --------->AHL20(2)                               <---  <---------GLK1(2)         --------->AHL20(2) <<<<<<<<<ARR2                                     <--- ------->DOF2         ----------->GT1 <-----------HVH21            <-------TEIL      <-----------RAV1(1) -->GT1          <---------ATHB12<-----------GT1--------->YAB1 <---------ICU4  <-------TEIL   <------   aaaagattctttctctcaaatcaagggaaaatatattactggtcaaacaatcaaattttataacataagtacagaactaagtacattgtgttgtttttac  24698400                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)                --------->GLK1(1)               --------->ARR14(2)               <---------ARR14(2)               <-----------ARR10             --------->LBD16     --------->ZAT18 ------------------>WRI1 ----------->AGL15                                                <---------WRKY18(1)<--------------- ------------AGL15                                                >>>>>>>>>WRKY18    ------------>CBF ==================================================================================================== -------DOF2<---------TOE1(2)                                    --------->WRKY12    <--------------- ------DAG2<---------LBD16                              ---------->DOF2             <-----------GT1<- -----GT1--------->DEAR3(1)                            --------->YAB1 --------->ATHB12             <-   tttttagtgcatcgccggatcgccccttagattagatgctacttccttcgtctgtaatcaaagtcccttgacttattgactgagtttaacaattttggct  24698500                             <---------ANAC55(2)                             --------->ANAC55(2)                           <-----------GT1                     <---------ANAC58                           --------->AHL20(2)             <-----------RAV1(1)                      --                        ------>MYB46(1)                   <---------O2                            <--                        ------>MYB83                      --------->O2 <-----------GT1           <--- --AGL1              --------->ANAC58                     <---------TGA1a                 --------->TOE2(3) ==MADS_MADS         --------->ANAC58           <-----------GT1<---------ANAC58         <---------YAB1 --AG               ------->TEIL               <-----------GT1 <---------ANAC46        <---------ARR11(3) ---------DOF2    --------->ZAT18    <-----------GT1      --------->TGA1a              <<<<<<<<<<GT-1 --------DAG2  ---------->DOF2     <-----------GT1     ------>ZmHOX2a(1)      --------->ZAT14  ------   acttttcttacataccaaaatgcaccaaattacttattttcactctgttttaacctcctcatgtggcttcaaattacttctgtagtctatatcattaaca  24698600                                                                                                    -                                                                                                    <                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                               ------                                                 <---------ICU4                 --------->YAB1 ------                                              --------->YAB1               --------->LBD16     <-----                                        ----------->GT1                   --------->ANAC46   <------- ------->TOE2(3)                       <---------TOE2(3)                 <---------LBD16   --------->YAB1 -------ICU4    ------->TEIL      <---------AHL20(2)                   <-----------GT1    <---------ATHB12 ------YAB1   ------->GAMYB      <---------AHL20(2)                 --------->YAB1    ------------>CBF --->YAB1    <---------MYB52(2)  --------->AHL20(2)            ------------>CBF--------->ICU4<-------   tcattaacatctataacgaacatagattacgaagattaattttggttataagaattatctaataaaccaatattaaccggaataataaaccaatgagagt  24698700 -------->ZAT14                                         ------------>CBF ---------ZAT14                                         --------->SPL7 ------------>AtSPL8                                <-------TEIL                      --------->At4g35610 ------------>AtSPL3                                --------------->AtSPL8      <---------HSFC1(2) ------ZAT14                                        --------------->AtSPL3      --------->HSFC1(2) --->ZAT14                                        --------->ARR11(1)        <---------REM1(1) ------- --->ZAT18               <---------ANAC46         --------->ARR14(2)    --------->ARR11(3)  --------- ----ZAT14  --------->ANAC46                      <---------ARR14(2)    <---------ARR11(3)  <-------- --------AtSPL8          --------->ANAC55(2)      <---------GLK1(2)  <-----------RAV1(2)   --------->HSFB2a(2) --------AtSPL3        --------->MYB52(1)       ----------->ARR10------>ZmHOX2a(1)    <---------At4g35610   actgtaccatttacacgaagaagagtaacgtagttttcagttttgaccagtagattcgtacaatctcctctccagatgttgaagcttctgcttccccaac  24698800                                                   --------->TOE2(3)                                            --------->GLK1(2)          <---------ZAT14                  <---------GLK1(2)            --------->ARR14(2) ---->RAV1(1)<---------ANAC58         --------->TOE2(3)                 <---------ARR14(2) >LBD16   --------->ZAT14             <----------DOF2        ------>ZmHOX2a(1)  <---------At4g35610 -------AGL15<---------ANAC58   <-----------GT1 <---------CCA1(2)  <-----------HVH21 <----------DOF2   atagaacatcagtttacttgttcaagtttcaatttttcaactttagattcttatctcaatctccttctctgtcaaattcggcatcttctttctcttcttc  24698900                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                     --------->ARR14(2)                                            --------->WRKY18(1)      <---------ARR14(2)                               --------->At4g35610                   <---------ARR11(3)       ------>ZmHOX2a(2)                               <---------At4g35610                   --------->ARR11(3)      <------ZmHOX2a(2)                               <---------LBD16                       <---------ARR14(3)     <--------                           <---------ARR14(2)                        --------->ARR14(3)     ---------              --------->ICU4<------ZmHOX2a(2)                     --------->HSFB2a(2)       ---------         --------->ANAC58  --------->ARR14(2)             --------->HSFC1(2)       --------->ANAC46         --------->ANAC58 <---------At4g35610---------->DOF2      <---------HSFB2a(2)       <--------   gagtctggctgaagcaatactgaaatgcagatcagcggaagaagcgttcaagctgttcgaaacgtcttcgagatctcgagtctccaagtcaaacgatctt  24699000                                   --------->ZAT18      <---------ARR11(3)                                 <---------ZAT2   --------->ANAC58                                 --------->GLK1(1)--------->ANAC46                                 <---------At4g35610   <---------At4g35610  <----------DOF2                --------->At4g35610 <-----------RAV1(2)                     <------- -ARR14(2)                       --------->ZAT2   --------->ANAC58                           -------- >ARR11(3)                  <---------LBD16<---------ARR14(2)                             --------->ANAC46 >ARR14(2)                <-----------GT1  --------->ARR14(2)                             --------->ANAC58 -ARR11(3)       <-------TEIL --------->LBD16 --------->ANAC46     ---------->DOF2        --------->ANAC58   caatctttttcggcagtgattcatgttttaaccggagctcacaagtatacgctcgccagatgtttgataaaaagcctcatagaacgtctgaaacgccaca  24699100                                           <---------RVE1(1)                                          --------->ARR14(3)                                          <---------ARR11(3)                                          <---------ARR14(3)                                        -                                          <---------ARR14(2)                                       --                                          --------->ARR11(3)                                       <-     ----------->GT1                      --------->ARR14(2)                                      <-- --------->At4g35610                --------->HSFB2a(2)                                         <---- <---------At4g35610                <---------HSFB2a(2)                 <---------ZAT6          ----- --ALFIN1                          <---------LBD16               <---------ARR14(2)             ----- --->RAV1(1)            <----------DOF2 ----------->ARR10        --------->ARR14(2)    <---------YAB1   gtgagccgagtaacatgtctcatagacttttcaatgctctggaagatattcagagtccaaaattcagtatcggagtgtttagtctattgattatggagtt  24699200           --------->MYB52(2)                                                                <------- -------->LBD16               <---------ANAC58                      <---------ANAC58         <------MYB83 ------->HSFB2a(2)            <---------ANAC46                      <---------ANAC58         <------MYB46(1) --------HSFB2a(2)            <---------ANAC58             <---------ARR14(2)             <---------ANAC58 -------LBD16                <---------MYB46(3)          --------->LBD16                  <---------ANAC58 -----ARR14(2)            <----------DOF2              <---------LBD16    <----------DOF2 <---------ANAC46 ---->GLK1(2)          --------->ARR11(3) --------->CCA1(2)--------->ARR14(2)        <---------AtLEC2 ---->ARR14(2)         <---------ARR11(3) --------->At4g35610   ---------->DOF2    <---------YAB1   tctggagatgggtttgtttgaagaagctctttgggtgagtcgagagatgaaatgttcaccggattcaaaagcttgtctttcgattttgaatggcttggtt  24699300  Previous    Next  AGI:  At5g61400.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G02150.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66662.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 24698776    to: 24700740    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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