Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------At4g35610                                                                          --------->At4g35610                                                                        <-----------RAV1(2)                                                                    ------>NtERF2                                                                   <---------ARR14(2)                                                                   --------->PCF2                                                                   --------->ARR14(2)                                                                 --------->LBD16                                  --------->ANAC58              <---------ANAC58  --------->ANAC58                --------->ANAC58              <---------ANAC46  --------->ANAC58                --------->ANAC46              <---------ANAC58 ---->GAMYB                    <---------ZAT18                 <---------LBD16 --->P<----------DOF2        <---------ZAT18                 --------->ALFIN1           --------->ANAC58 >ANAC58                     --------->ZAT18      <-----------RAV1(1) ----------->RAV1(1) >ANAC58           --------->MYB46(3)         <-------TEIL<---------AtMYB61             --------->ANAC58   ccccaagcctttaaaaatcgacccatcagattgcacacacaaatcaggttcattgttggagaggttgcggagccacagatgccatggctcaagacatgga  24677800                                                                    --------->ZAT14                                                                   <---------DAG2                                                              <---------ALFIN1                                                            ----------->RAV1(1)                                                            ==============================RAV                                                         --------->ANAC46               --------->DAG2      --------->TOE2(1)     --------->ANAC58                       -----              ---------->DOF2      --------->TOE1(1)     --------->ANAC58     ----------->RAV1(2)           ------>ZmHOX2a(1)       --------->ANAC46    ---------->DOF2   --------->YAB1         -----  <---------ZAT18                 ------>ZmHOX2a(1)--------->TOE2(3)<---------ZAT14       <----------DOF2  --------->ZAT18         <---------WOX13(1)  <---------AHL20(2)   <----------DOF2     --------->ARR11(3)  --------->PCF2        --------->ATHB12      --------->AHL20(2)<---------ALFIN1 --------->ZAT2 <----   caagggccctctcctataaagttcaaagattgactcctcgtaactaaattaaacatcaaaagccacacactttactcataacctgctcagaccttttact  24677900                 --------->AtMYB61          --------->At4g35610        <---------ICU4       --------->MYB52(1)               --------->ZAT6     --------->YAB1    <-----------HVH21                 <---------At4g35610 --------->ANAC58    <-------TEIL--------->ANAC46                         --------->At4g35610 --------->ANAC58 ---->TOE1(3)  ----------->RAV1(1)                   <---------HSFB2a(2) --------->ANAC58 ---->TOE2(3) --------->ANAC46                       --------->HSFB2a(2) --------->ANAC58 ------DOF2   <---------ALFIN1         ---------->DOF2  <---------ZAT6 ---------->DOF2   ttaacattcatcatctccaccacaatgtcacaaacagattacaaagaacaacattctagagctaacacaagtttaaagcaagaaaacttttgaatcaaac  24678000                                                                   --------->ANAC55(1)                                                                   --------->ANAC46                                                                   --------->ANAC55(2)                                                                   <---------ANAC55(2)                                                                   --------->ANAC58                                                                   --------->ANAC58                                                                  <-------TEIL                                                                 --------->ARR14(1)                                                                 --------->CCA1(2)                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                                --------->ARR11(1)                      <------ZmHOX2a(1)     --------->DAG2      <---------GLK1(2)                 ---                   <-----------RAV1(2)     ---------->DOF2    ----------->ARR10                  <---                   <---------LBD16  <---------AHL20(2)      <---------At4g35610  --------->At5g28300              --------->HSFB2a(1)  --------->AHL20(2)       --------->At4g35610 ----------->GT1 -----             <---------TOE1(2)  ----------->GT1        <----------DOF2     ---------->DOF2      <----   tagtttatgagttcgaatgtttcaggaagagaaacgattaaatgaaaaagggagagactttgagcagatacgcaagagaaagcagtgaattttgaaaatt  24678100                           <---------MYB59            --------->ANAC58            --------->ANAC46            --------->ANAC58  ---------->DOF2          ---------->DOF2  --------->TOE1(3)       --------->ANAC58   --------->ARR11(3)            <      --------->YAB1       --------->TOE2(3)       --------->ANAC46   <---------ARR11(3)            - ------->DOF2        <---------At4g35610           --------->ANAC58  <---------CCA1(2)        ------- ------AHL20(2)      --------->At4g35610    --------->At4g35610     ----------->ARR10       --------- ---->AHL20(2)      <-----------ARR10       <---------At4g35610 ----------->GT1            --------->ARR14(2) -----AHL20(2)     <------ZmHOX2a(1)        --------->ZAT2  <------ZmHOX2a(1)              <---------ARR14(2)   aaaaggaatcatacaagcagaggagcttacctaaaagctctgtagaagctgagacgcaaataggagaggttatatcttcgacttggaatcgcagaaactg  24678200                                                                      <---------HSFB2a(2)                                                                      --------->HSFB2a(2)                                                                     <---------LBD16                                                                  ------>MYB46(1)                                                                  -------->P                 --------->ZAT2                                   ------>MYB83                 <---------At4g35610           *TSS             --------->AtMYB61                 --------->At4g35610 --------->DAG2             ------->GAMYB         --------->ANAC58           ---------->DOF2            <---------MYB55(2) ---------ARR14(2)                <------ZmHOX2a(1)            --------->MYB46(3)            -------- -------->ARR14(2)    <---------ETT(2)----------->GT1         --------->ANAC58         <---------STY1(1) -->TOE1(2)   ---------->DOF2  --------->At4g35610     --------->At4g35610 --------->ICU4    <------- >GLK1(2)--------->ANAC58   --------->ZAT2---------->DOF2     --------->ANAC58  <---------AHL20(2)   ggaatcgtctcaagcacaaagctgtctacgagcagaggaaaagtaaaagtaagaagaagctctcaaccaactctggaaatattaaaaccctagaggtttc  24678300                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                            <--------                                                                                       <-----------HVH21                                                                                      <---------MYB46(3)                                                                                      <------MYB83                                                                                      <---------DEAR3(2)                                                                                      <------MYB46(1)                                  ----------->GT1                                     <---------SPL7                                <---------LBD16                                      <---------MYB46(3)                         ------->GAMYB--------->AHL20(2)                             <---------DREB2C(2)                 <---------DEAR3(2)   <---------AHL20(2)                             <---------DEAR3(1)                <---------DEAR3(1)--------->LBD16                                    --------->MYB55(2)               --------->SPL7 <---------ARR14(2)                                   <-----------HVH21             <---------SPL7 ---------->DOF2                                   <---------ARR14(2)          ------->TEIL  --------->MYB46(3)                      <------ZmHOX2a(1)--------->MYB59 ->ARR14(2) --------->DEAR3(1)--------->ARR14(2)       <<<<<<<<<<MYB80    <-----------GT1 ----------- --ARR14(2)--------->DEAR3(2) --------->GLK1(2)<---------AHL20(2)     <---------GLK1(2)<-------GAMYB   gcttaacccatgaaccggccggttcaaccaaaaatccggtttaaatgttttaattttggtttgataggaccagattatacgattcggtcggtcggacctg  24678400                           >>>>>>>>>>AGL24                           >>>>>>>>>>AGL22                           >>>>>>>>>>AGL20                        --------------->AGL15                        ------>ZmHOX2a(1)                        <---------------AGL15                       <-----------------AGL3                       <-----------------AGL2     <-----------GT1   ----------------->AGL3                                      <---------ANAC46 -->TOE1(2)            --------->TOE2(3)                                           <---------ANAC58 --ZAT2           <---------ICU4          --------->ATHB12            <----------ID1 ->ZAT2          ------>ZmHOX2a(1)        --------->YAB1            --------->ANAC58        <-------- >ARR14(2)      <---------MYB59          --------->ICU4             --------->ANAC58       --------->AHL20(2) -ARR14(2)     ------>ZmHOX2a(2)     <---------YAB1               ---------->DOF2  <---------ANAC58 >HVH21        ================HOX2a_HOX2a<---------ICU4    --------->ATHB12     <---------YAB1 <----   ggattataaacccttgatcctaattcctaaatatggaccatgaatgattacattgttttgtatgtttggaaagctacaaaattttgcttgttataaaatt  24678500                                                 --------->ARR14(2)        --------->AHL20(2)                                               --------->LBD16         ---------->DOF2                                              --------->HSFB2a(2) <---------------AGL15                                           --------->ARR14(2)     --------------->AGL15                             <----------DOF2 <---------LBD16      ===================================                        <---------ARR11(3)<---------GLK1(1)    <-----------GT1               <------- <----------DOF2    <---------ANAC58  ----------->RAV1(1) <----------DOF2----------->GT1     -------- -AHL20(2)          <---------ANAC58<-------TEIL <---------ARR14(2)   --------->YAB1      --------->YAB1 ---TEIL  <----------DOF2 ------>ZmHOX2a(2)<---------ARR14(2) <-----------GT1        <-------TEIL   -   catctttttgtgcttaattgtttcttgatctctttagatgcaacatttccggattccactctttttaacctataaaagtaaattagattcattcataatt  24678600                                                                                                  ---                                                                                                  ---                                                                                               ------                                                                                               ------                                                                                             <-------                                                                                             --------                    <---------------AtSPL3                                                  ---------                    <---------------AtSPL8                                                  ------>MYB46(1) <---------------AGL15                                                                      ------>MYB83 --------------->AGL15                                                                      --------- ================MADS_MADS --------->ZAT14                                                --------->AtMYB61 --ICU4          --------->MYB59               <----------DOF2                        <---------ETT(2) ->ATHB51        <---------TOE2(3)      ---------->DOF2---------->DOF2             <---------REM1(1) ---------------->AGL2     <---------ZAT14     <---------DAG2  <-------TEIL        <---------ANAC46   tctccattagaagaaattttaggtagtactgaactattgtattaaagggctttttgttaaagaggttcaagtagagagattagtgatgtagaccacccac  24678700  Previous    Next  AGI:  At5g61330.1    Description:  rRNA processing protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO70562.1); contains InterPro domain TRAUB; (InterPro:IPR012617) Range:  from: 24674374    to: 24678247    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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