Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------At4g35610                          --------->At4g35610                        <-----------RAV1(2)                    ------>NtERF2                   --------->PCF2                   --------->ARR14(2)                   <---------ARR14(2)                 --------->LBD16                                                                   <-                <---------ANAC46                                                       --------->ANAC46                <---------ANAC58                                                      --------->LBD16                <---------ANAC58                      --------->PCF2<---------TOE2(3) ------>ZmHOX2a(1)               <---------LBD16                        <---------ZAT18      <---------AHL20(2)      --  <-----------RAV1(1) ----------->RAV1(1)             --------->ZAT18      --------->AHL20(2)     --- -----TEIL<---------AtMYB61             --------->ANAC58            ----------->GT1   <---------HSFB2a(2) ----RAV1(2) --------->ALFIN1           --------->ANAC58       ------>ZmHOX2a(1)      --------->HSFB2a(2)   ttcattgttggagaggttgcggagccacagatgccatgactcaaggcatggacaagggccctctcctattaagttaaaaaattgtctcctcgaaactaaa  24671700                                                                --------->ANAC46                                                                <---------ALFIN1             <---------ALFIN1                          --------->YAB1        --------->ANAC58        ------>MYB83          <-------TEIL --------->AtMYB61        --------->ANAC58      <---------MYB59 <---------ANAC55(2) --------->ANAC46      ---------->DOF2   --------->YAB1        --------->ANAC55(2)----------->RAV1(1)               <-    --------->YAB1 <---------ZAT14        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------- --------AHL20(2)  --------->ZAT14       <----------DOF2    --------->At4g35610  --------->YAB1    -- ------->AHL20(2) <---------DAG2------>MYB46(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------- ------>AHL20(2)  <----------DOF2     --------->ARR11(3)  <---------ICU4 <-----------HVH21  ---------   ttaaaatcaaaagctacacactttactcataacctactcagaccttttacttaacattcatcatctccaccacaatgtcacaaacatatcatacaagcat  24671800                                                                                                    <   --------->At4g35610                                                                              -   <---------At4g35610                                                                              <  <---------ZAT6                                                                                    - --------HSFB2a(2)                                                                               ---- >ANAC46                                                                                        <---- ------->HSFB2a(2)                    --------->TOE2(2)                                         ----- >ANAC58         ---------->DOF2      --------->TOE1(2)            --------->WOX13(1)          <----- >ANAC58--------->ZAT6                --------->TOE2(3)   ---------->DOF2                     <------   tctagagctaacacaagtctaaagtgagaaactttcgaaacctaagaccacaatggagaagaaaggaatcaatccagtttataaacttcgagttttttcg  24671900  --------->GLK1(2) ---------HSFC1(2) -------->HSFC1(2) ---------HSFB2a(1)                             --------->ANAC58 -------->HSFB2a(1)                             <---------ANAC55(2) ----->LBD16                                    --------->ANAC55(2)            ---------->DOF2 -----HSFB2a(2)                --------->MYB52(1)                   <----------DOF2 ---->HSFB2a(2)    <----------ID1               --------->ANAC46 --------->ARR11(3)              ---- ----LBD16    --------->At4g35610               --------->ANAC58 <---------ARR11(3)    --------->YAB1 ---LBD16     <---------At4g35610     ----------->GT1   ---------->DOF2    --------->TOE2(3)     <---   ggagattccattatacagatgaagacaaaaaaaaaacagagagcaaaattacgcaagagaaagcagagaactttgaacattaaaaggaatcatacactga  24672000                  <---------MYB59                 --------->ANAC58                 --------->ANAC46                 --------->ANAC58          ----------->GT1   --------->ANAC58   --------->ANAC46        <---------YAB1                  ---------->DOF2   --------->ANAC58        <---------AHL20(2)           --------->YAB1                 ---------->DOF2 ----->GLK1(1) <-----------GT1                        --------->GLK1(2)               *TSS--------->At4g35610 ------GLK1(1)--------->KAN4(2)                   >>>>>>>>>TBF1               <---------ANAC46  -----   aatccaagaaaatggttatacccaattgtataattgtatgttccaatacgaagaagaatcagaaagaaacctgtttatctgcgtttagcaaaagctgaga  24672100                                                                                              -------                                                                                          -----------                                                                                          <----------                                                                                 <---------AHL20(2)                                                                              --------------->AGL15                                                                              <---------------AGL15                                                                             <-----------------AGL3                                                                             ========================                                                                            ------------>CBF<--------                                                                  --------->ANAC46       ------>NtERF2                                                                  <----------ID1--------->AHL20(2)      <---------ATHB12                                      --------->At4g35610 <---------ATHB12      ------------>CBF                 <----------DOF2      <---------At4g35610 ----------->TBP ----->DOF2                      --------->HSFB2a(2)     <-----------------------TaNAC69(2)----------   aagatgaaatcaatttatacgtctaattccattttctagggctttcaacaaaaatgagaggcatctaaacgacaacgtttcaataaatggctgcctttat  24672200  --------->ANAC58  --------->ANAC58 -->ATHB12 ------>AGL1 -------AGL3                                                                   <----------ID1 =======MADS_MADS                                >>>>>>>>>MYB2              ---------->DOF2     ----- --DOF2             ----------->RAV1(1)    --------->HSFB2a(2)     ----------->GT1              ----- ----------->WRI1--------->AtMYB61         <---------HSFB2a(2)  ------------------------>ANAC81 -----   tgaaacgacaacgtttctaccacaacagattgaaccaaaaacactctagaaaaccaaaaaaaaaaaaaactgaaaaactaaagaacaaaaacatccccaa  24672300                                 <---------ARR14(2)                                 --------->ARR14(2)                             --------->ARR14(2)   --------->WOX13(1)       ----------->HVH21                                   <---------ARR14(2) <---------ATHB12           ----------->TGA1                           <----------DOF2            <-- ---->ANAC46           --------->ANAC46                             --------->ARR11(3)            <-- ---->ANAC58           --------->ANAC58                  <-----------HVH21     <------ZmHOX2a(1)  --- ---->ANAC58           --------->ANAC58         ------>ZmHOX2a(1)   <---------ARR11(3)      ---------   gaaatcaatctgctactctgtctctaagccatgacgatatgtgtcttctccttccttcttgtcacagcaagagctttaagaggatacttcataacaacag  24672400                                                 --------->ANAC58     <-----------GT1       <---------CCA1(2)         --------->TOE2(3)              <---------MYB59 -------ZAT14                    --------->TOE1(3)           <-----------GT1 -------ZAT18        <---------WRKY12            --------->ANAC46 ------>MYB83 ------>ZAT14     --------->ANAC58               --------->ANAC58 ------>MYB46(1)           --------- -->RAV1(1)       --------->ANAC58         <----------DOF2<----------DOF2      --------->ARR14(2)   tgaactcccatttctcagacaagtcaacttcataaccttcaacttctttccactcaaactctttaaccaaattcaccacaaaatactccaaatgcaacat  24672500                                <-----------------AGL1                       ------>ZmHOX2a(1)                     ------>ZmHOX2a(2)                     ================HOX2a_HOX2a                   <---------ARR14(2)                   <---------GLK1(2)                   --------->AGP1                   --------->ARR14(2)  --------->ANAC58                   --------->ARR11(3)  --------->ANAC46                   <---------ARR11(3)  --------->ANAC58                 ----------->ARR10    --------->RAP2.6(3)             ----------->HVH21------>ZmHOX2a(1)            --------->LBD16 ----------->RAV1(2)   <------ZmHOX2a(2)<------ZmHOX2a(2)--------->MYB52(1)   ===========================HOX2a_HOX2a   ==============================HOX2a_HOX2a   ==================================HOX2a_HOX2a                                 <----------DOF2  <---------ARR14(2)=================HOX2a_HOX2a <----------DOF2        --------->TOE2(3)         ---  --------->ARR14(2)=============HOX2a_HOX2a    <---------ICU4   <---------HSFB2a(2)         -------- -->RAV1(1)<---------LBD16------>ZmHOX2a(1)    <---------YAB1    --------->HSFB2a(2)<---------ARR11(3)   ggccgatccaatccctggacagatcctccttcctgctccaaacggcatcatctttatccctctacttccagtaacatcaacttctttatcttctccgatg  24672600  Previous    Next  AGI:  At5g61310.1    Description:  cytochrome c oxidase subunit Vc, putative / COX5C, putative. Identical to Probable cytochrome c oxidase polypeptide Vc-3 [Arabidopsis Thaliana] (GB:Q9FLK2); similar to cytochrome c oxidase subunit Vc family protein / COX5C family protein [Arabidopsis thaliana] (TAIR:AT2G47380.1); similar to cytochrome-c oxidase [Brassica rapa] (GB:ABL97970.1); contains InterPro domain Cytochrome c oxidase subunit Vc; (InterPro:IPR008432) Range:  from: 24670648    to: 24672086    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61320.1    Description:  CYP89A3 (cytochrome P450, family 87, subfamily A, polypeptide 3); oxygen binding. similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) Range:  from: 24672324    to: 24673864    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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