Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------MYB46(3)                                                                            <------MYB83                                                                            <------MYB46(1)                                                                           --------->MYB111(2)                                                                           <---------AtMYB61                                                                           --------->MYB111(1)                                                                           <---------DEAR3(1)                                                                           <---------MYB46(3)                                                                           --------->MYB46(2)                                                                           --------->MYB55(2)                                                                          <---------MYB55(1)                                                                        <---------MYB46(3)              <---------MYB46(3)                                        --------->ATHB12            <---------ANAC58                                           <---------TOE2(3)            <---------ANAC58                                           <---------TOE1(3) ---->GAMYB <-------GAMYB                                              <---------YAB1 -----At4g35610                                                      --------->YAB1   ------>ZmHOX2a(2) ---->At4g35610                                                     <---------YAB1  <---------ARR11(3) ->HVH21   <---------MYB46(3)                               --------->YAB1<--------P--------->ARR11(3)   ctgaacttcttcttggttgtttctcggtgtgttttgttttgttttctagttgagactacttatcagaactattatggttggtgtttgatcttatgggcta  24646100                           --------->ANAC55(2)                        <-------TEIL                    <-------TEIL                  --------->ARR14(2)                                         --------->ARR14(2)    <-                  <---------ARR14(2)                                         <---------ARR14(2)    --                --------->LBD16                                       ------>ZmHOX2a(1)         -----               <---------ANAC46                                  <---------GLK1(1)              <----              <---------LBD16                    <-----------GT1 --------->GLK1(1)        <----------   tgtgaaacattgaaactgcggatacattcatgtaatcttcagtgtgttattttgcaactccagtttgatatcctagccgaatttgatttgtttaaccggt  24646200        ------->GAMYB                         --------->ATHB12       --------->MYB46(3)                     --------->YAB1                                    -----      -------->P                              <--------HAHB4                                    -----   <------ZmHOX2a(2)                          -------->ATHB1              <---------WOX13(1)   <----- --------HSFB2a(2)                            <---------ICU4         --------->ANAC58        -------- ------->HSFB2a(2)                           <---------ATHB12        --------->ANAC58       >>>>>>>>>MYB98 ---->ARR14(2)                              ------->TEIL       ---------->DOF2             <--------- -----ARR14(2)                 <---------AtMYB61              <---------AHL20(2)   ----------->GT1 -- -GT1--------->WOX13(1)--------->GLK1(2) <---------YAB1      --------->AHL20(2)    <---------ZAT6 <--   tctggatcaaccaaaaatatgagataatcggttttggtctcttatgaatcattaagtctaaaaattaatgcaggtaattgacatagtgtgatttaacata  24646300                                                                                 <---------ICU4                                                                                 -------->ATHB1 ---->ATHB51                                                                     --------->ATHB12 ---->ATHB12                                                                     --------->YAB1 ----YAB1    ------->TEIL              ---------->DOF2                          --------->ICU4 ->YAB1<---------ARR14(2)      <------ZmHOX2a(1)                                <---------YAB1 --GT1 --------->ARR14(2)  <---------ANAC58                                     <---------ATHB12 --------->HVH21           <---------ANAC58                      ----------->RAV1(1)            <---- -------WOX13(1)           <---------ANAC46                    --------->At4g35610    <---------YAB1   attgacatggatatgtatatagctagattgcgaggatgaagcaaagttttgctcttaattgagttagcaccatatgtttctaatcattgtcatttgtgtc  24646400                                   --------->AHL20(2)                                   <---------ICU4                                   --------->YAB1                <---------ARR14(2)                              ------------>CBF              <------MYB46(1)                             --------->ANAC58               <------MYB83                             --------->ANAC58              --------->MYB59                        --------->ANAC58               <--------HAHB4                        --------->ANAC58               --------->ATHB12             <---------------AGL15 <--------ATHB1      --------->AHL20(2)             --------------->AGL15 <---------AHL20(1)  <---------ICU4            <-----------------AG   --------->ATHB51    --------->ATHB51            ----------------->AGL3<---------ATHB12     <---------AHL20(2)            <-----------------AGL3<---------ATHB51    --------->ICU4               <------MYB46(1)          <-----------GT1 <------ZmHOX2a(1)           <---------ATHB51             <------MYB83     --------->ICU4<---------TOE1(3)              ------------>CBF              <------------CBF   <- <------ZmHOX2a(1) <---------TOE2(3)    <-----------GT1-------->ATHB1          --------->ATHB12------ -----ANAC46<-----------------AGL2--------->ICU4 --------->YAB1  --------->ARR14(2)<---------MYB46(3)   ttaggacatgtttaactaattaaggtaaggaatgcaataattttacacaaatgacaattatttggtcgatacccattaacaagattggttctatctcttc  24646500                                                              <---------MYB46(3)                                                           <-----------HVH21                                                          <---------TGA1a                                                          --------->TGA1a                                                          <---------O2  <---------ANAC58         <------MYB46(1)                               --------->ARR14(2)         <------MYB83                            <-----------GT1        <---------ANAC46   --------->ARR14(2)        <---------AtMYB61                     <---------ICU4 <---------DEAR3(1)            <---------ARR14(2)        --------->MYB59                       <--------HAHB4 <---------At1g77200       --------->ANAC46      *TSS    <---------ARR14(2)          --------->LBD16 --------->O2  <---------ANAC58-------------    --------->ATHB12         =======================================bZIP_DOF           --------->ANAC58 --------ATHB12              ---------->DOF2 <------ZmHOX2a(2)<---------DEAR3(2)       --------->ANAC58 ------>CBF   --------->ARR14(2)        <---------LBD16<---------ARR14(2)              --------->ANAC55(1)   aatgaatgatttggtcgatacccattaaccaaaaagaaaacatccggatcattaccagacccgtcggtgagatagcgggtttgaaatacacggtattcgg  24646600              <------ZmHOX2a(1)            ------------------------>ANAC81                                  <----------DOF2            --------->ALFIN1                                            ---------->ID1           <------ZmHOX2a(1)                                          <---------MYB46(3)        <-----------RAV1(2)                                           --------->MYB52(2)        <---------LBD16                                             <---------MYB52(1)    <-----------ARR10        <---------AHL20(2)                 ------>ZmHOX2a(2)    --------->GLK1(2)       --------->YAB1                     <------ZmHOX2a(2)    ------->TEIL <------ZmHOX2a(1)        <---------AHL20(2)  --------->ARR14(2)                 ----   <---------GLK1(2) ----------->GT1      --------->AHL20(2)  <---------ARR14(2)                 ---- ---------->TaNAC69(2)     --------->AHL20(2)                 --------->ARR11(3)     <----------DOF2   tttacgaatctcaggaggaggaagagaaaataaaaatgagttttttaatttcgctctcttcttagatcccgtttgttctctttctcactttggctgttta  24646700                                                                          --------->ANAC58                                    ------>ZmHOX2a(2)                     --------->ANAC46                                   <---------At4g35610               --------->ANAC58                                   --------->At4g35610            <---------ZAT18                        <---------At4g35610                     <---------At4g35610                        --------->At4g35610                 <----------DOF2      ---------->DOF2           <---------ANAC58       <---------ARR14(2)       <---------ANAC58 --------->ARR11(3)           <---------ANAC58       --------->ARR14(2)       <---------ANAC58 <---------ARR11(3) ----->ANAC58         <---------ZAT18                   <---------WOX13(1)--------->ANAC58   <------- ----->ANAC58       <-----------HVH21                 <---------ICU4 --------->ANAC58      ----------   agcaaaaaccatggcttctcgctgtgagctacttctgatctgcgtcttctctctcttaattgcttttgctcactccaagacattgaagcgagatggtaag  24646800                                                                                   <---------ARR14(2)                                                                                <--------P                                                                              <------MYB83                                                                              <------MYB46(1)                                                                             --------->MYB111(1)                                                 <---------WOX13(1)          --------->MYB59                                      <------ZmHOX2a(2)                   <---------GLK1(2)                                     <---------ARR14(2)                   <---------ARR14(2)          <-----------GT1            --------->ARR14(2)                   --------->ARR14(2)        <    --------->TOE2(3)              ------>ZmHOX2a(2)                   <---------------AGL15      --- <-----------GT1                   =============HOX2a_HOX2a           <-----------------AG        <-- -P <----------DOF2            <---------YAB1  --------->ATHB12       <-----------------AGL1      <-- ->GT1 --------->YAB1  <---------ANAC46  ------>ZmHOX2a(1)        <----------DOF2  --------->ARR14(2)   tttttactttaatcaccctctggttttgtgtttatgatcgatcctccattgattgaatttgtatagctctttaacagatttggtagatacccattatcca  24646900                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                 <---------ZAT2                                   --------->ANAC46                              --------->At4g35610                                   --------->ANAC58                              <---------At4g35610                                   --------->ANAC55(1)                           --------->ZAT2 -------TEIL                       --------->ANAC58    <----------DOF2      <---------At4g35610 ------>ARR14(2)                  --------->ZAT18------>ZmHOX2a(1)          --------->At4g35610 -------GLK1(2)                   <---------ZAT18<----------DOF2            --------->ZAT2 -------ARR14(2)          --------->ATHB12    <------ZmHOX2a(2)             <---------ZAT2   gattcgttctatctcttatcaatttccatgatttagcacgcaagttcgatcctttttctttcatctatttctaatctgagctgagctgagctcaaattga  24647000  Previous    Next  AGI:  At5g61228.1    Description:  CPuORF15 (Conserved peptide upstream open reading frame 15). similar to CPuORF16 (Conserved peptide upstream open reading frame 16) [Arabidopsis thaliana] (TAIR:AT5G07842.1) Range:  from: 24644413    to: 24646194    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g61230.1    Description:  ankyrin repeat family protein. similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70783.1); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 24644413    to: 24646194    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g61240.1    Description:  protein binding. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G13910.1); similar to leucine-rich repeat resistance protein-like protein [Gossypium hirsutum] (GB:AAK70805.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 24646506    to: 24649437    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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