Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->LBD16                                      --------->ANAC58                      --------->HSFB2a(2)                                   --------->ANAC46      ---                  --------->GLK1(1)                                         --------->ANAC58    -----      ---------->DOF2 <---------HSFB2a(2)                          ----------->GT1          --------- ------>TOE2(3)  <---------ARR11(3)                               --------->At5g28300      <---------ATHB12 ------>TOE1(3)  --------->ARR11(3)                              ----------->GT1         --------->WOX13(1)   ccctaaattcaagcgagaagaactccagaaaccattcgtattccaaggtgtaattgaagaacagtggcagtgaaaaatacgaaaactgaaacaatcaata  24624600                                              --------->MYB59                                      <-----------------------TaNAC69(2)                                 --------->HSFB2a(2)    --------->MYB52(1)           --------->ANAC58                                           <-------- --------->ANAC58                --------->ANAC55(2)             <-------TEIL               ------>ZmHOX2a(1) --------->bZIP60(1)             --------->ANAC58        --------->ATHB12                  ---------- --------->ANAC58                <---------ANAC55(2)    <---------YAB1            =================HOX2a_HOX2a <---------bZIP60(1)             <---------HSFB2a(2) <---------ETT(2)      --------->ARR14(2) -------->TGA1  ---------->DOF2  <---------ANAC46 ----------->HVH21        <---------GLK1(2)--------- ---->YAB1 <------ZmHOX2a(1)    <---------LBD16 <---------At4g35610        <---------ARR14(2)-------- >YAB1 --------->TOE1(2)       --------->MYB52(1) ----------->TGA1--------->YAB1  ------>ZmHOX2a(2) -   gtgacgaaacgaaggagataaagatggagagagttacggaagcgtagttaggctgacgacgattgcattcatgttcggattcgatctcttcttcctcgga  24624700                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                               ------>ZmHOX2a(2)                                              -------                              <------ZmHOX2a(2)                                               <------                              <---------GLK1(1)                                               <------                              --------->GLK1(1)                                              --------                             --------->ARR11(3)                                            ----------                             <---------AGP1                                                ----------                             <---------ARR11(3)                                          --------->At4g35610 -LBD16                      --------->ARR14(2) ------->GAMYB                         --------->ZAT2 ----------->WRI1            <---------ARR14(2)--------->MYB46(3)                     <---------At4g35610 >LBD16                     <---------CCA1(2)<-----------GT1                          --------->At4g35610 ->ANAC46                <---------LBD16  <----------DOF2                  <---------At5g28300<------ -------->ARR11(3)--------->YAB1  <----------DOF2                    ---------->DOF2  <---------ZAT2   attatctccgaacagattaagcatcatctcggatctcttttctcctttaaccatcttcgcctcacttactcaaaagtcactgcctcttagctggtgacgg  24624800       <---------At4g35610 ------->ATERF1(1) --------ZAT2 -----NtERF2 -------RRTF1(1) -------ERF1 --->NtERF2 -------RAP2.3(1) -------ATERF1(1) -------DEAR3(2) -------DEAR4(2) -------RAP2.6(1) -------MYB46(3) ------RAP2.6(2) ------RAP2.3(2) ------DEAR3(1) ------RRTF1(3) ------RAP2.3(3) ---->ATERF1(1) --NtERF2 ----ATERF1(1) >NtERF2 ----ERF1   --------->At4g35610 ----RRTF1(1) ----RAP2.3(1) ---RAP2.3(3) ---RRTF1(2)<---------At4g35610 ---RAP2.3(2)                                                                                       < ---RAP2.6(2)                                                                                       - ---O2<---------ARR11(3)                                                                            - ---bZIP60(1)    ------>NtERF2                                                                      < ---ATERF1(2)   ----------->HVH21                                                                   - -->ATERF1(2)   --------->DEAR3(1)                                                                 <- ---RRTF1(3)<---------GLK1(1)                                                                 ------- ---DEAR3(1)--------->GLK1(1)                                                                -------- ->ATERF1(1)--------->ZAT2 --------->ZAT14                                                   <------- ->TGA1--------->At4g35610 <-------TEIL                                                    <---------bZIP60(1) ->HVH21------>ZmHOX2a(2)  --------->ZAT18                       <-----------GT1     <---------AHL20(2) ---ANAC46  <---------ZAT2 <---------ZAT14<----------DOF2   <---------AHL20(2)     <----------DOF2 --   cggctcgtgatctgagctccgacgaagggttcactgttatcggcctttgttgaagaagctatttttttttcatctctacctcgcgattttatggcatcag  24624900         --------->AHL20(2)     --------->ICU4     <---------YAB1   --------->YAB1   <---------ICU4  --------->ICU4  <---------YAB1 --------HAHB4 ------->ATHB1 -------->YAB1 ---------ICU4                                                                        <---------AHL20(2) -------->ATHB51                                                   <-----------GT1   --------->AHL20(2) --------YAB1                   ---------->DOF2              <----------DOF2    <---------GLK1(2) -->YAB1<---------YAB1  --------->REM1(1)          *TSS   --------->ARR11(3)  --------->LBD16 ->At4g35610          <-----------GT1           <---------YAB1    <-----------GT1   <---------YAB1 --At4g35610       ----------->GT1      ----------->GT1   <---------ARR11(3)<---------LBD16 <-------- ------->ICU4      <---------ICU4    ---------->DOF2     <---------CCA1(2) --------->MYB52(1)   <----   aattattattattaaaaacaattgttacaacttacaaagaaaaggaaattttcatcgatatatcttttttaacgcattaccggattattaaaaatcattt  24625000   <---------ANAC55(1)   <---------ANAC58   <---------ANAC58                                                              ----------->RAV1(1)   <---------ANAC46                                                           --------->PCF2   <---------ANAC55(2)                                                  <---------YAB1   --------->ANAC55(2)  <----------ID1                  <---------TOE2(3)    <-----------TCP11(1) <-----------GT1        ----------->GT1          <----------DOF2       <---------AHL20(1) -ICU4                 ----------->GT1   <---------AHL20(2)            --------->AHL20(1)        <--- -----AHL20(2)------>NtERF2  ---------->DOF2<XXXXXXXXXXXXXXXXXXXXMIR825<---------ARR11(3)        <---   tttttacgtgtaacgacgactagagagggaaaaaagatgggattttatgggcttttttgagattggaattcaatatttttggcccacaaattttgggtta  24625100                         <---------ANAC58                         <---------ANAC58                        <---------ZAT2           <----------DOF2          <---------ANAC58                               <----------DOF2       <---------GLK1(2)<---------At4g35610       ------->TEIL    <---------ARR11(3)             <--- <---------GLK1(1)    --------->ZAT18      <------NtERF2  --------->YAB1       <---------GLK1(2) ---- ------TOE1(3)        <---------ZAT18   ---------->ID1  <---------WOX13(1)<-----------GT1  <------NtERF2 ------TOE2(3) <---------YAB1       <---------ANAC58 <---------YAB1   ------>ZmHOX2a(1) ---------->ID1   tggataccagtttctttgtgatagtgagcttgtgtttgccttggcccctatgtatatgaatgatacaacatccttttaactgattcttttggcccctatt  24625200                            <---------AHL20(2)                            --------->ATHB51                            --------->YAB1                            -------->ATHB1                            <--------HAHB4                            -------->HAHB4                            <---------ICU4            --------->AHL20(2)            <---------AHL20(2)           --------->AHL20(1)           --------->AHL20(2)           <---------AHL20(2)                                                                       <           <---------AHL20(1)   <-----------GT1                                                     <       <---------AHL20(2)  <---------YAB1                         --------->AHL20(2)                <       --------->AHL20(2)  <---------ATHB51                       <---------AHL20(2)            <----      --------->AHL20(2)   <---------ATHB12             <---------At4g35610          <---------HSFB2a(2) ------AHL20(2)            --------->ICU4        --------->ARR11(3)  <---------TOE2(3)          <---- ----->AHL20(2) <---------AHL20(2)    <----------DOF2   --------->At4g35610          --------->HSFB2a(2)   tttttatatttaatttattttaaaaactaattattaacttctttgatcaaataacttgagttgccaaaataaatgttatgtcttcttctaaaacattgtt  24625300                                                           --------->MYB52(1)                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                    ---------->DOF2         <---------ARR11(3)                     <---------ANAC55(2)         --------->ARR11(3)                     ----------->GT1 ------>MYB83 ------MYB46(1)                                 <------MYB83 --------->DEAR3(2) ------MYB83<---------AHL20(2)                  <------MYB46(1) ------>MYB46(1)         ----------->HVH21 ---------MYB46(3)  <----------DOF2            --------->MYB46(2)                     <---------ANAC55(2) -------RAV1(1)<---------At4g35610        --------->ICU4--------->YAB1                --------->ANAC55(2) -----MYB46(3)<-----------GT1 <-----------GT1  --------->MYB59------->GAMYB  --------->YAB1        --   gttggtttatagattttatctgctttagaaattaacaagagacaaagattaggtaaaagcataaccgacttgtgttctatgaaaacttaagtgacaacta  24625400                      ------>ZmHOX2a(1)                  --------->ARR14(2)                                             ----------->GT1                 --------->GLK1(1)         --------->YAB1              <---------TOE2(3)                 <---------GLK1(1)         ----------->GT1          <---------ATHB51               <------ZmHOX2a(1)  --------->YAB1                    --------->ICU4      <----------ID1            <---------LBD16   --------->AHL20(2)                 <---------ARR11(3)     ----------->GT1       ------->TEIL   --------->LBD16   --------->YAB1           --------->AHL20(2)   ---------->DOF2    <---------YAB1<---------ARR14(2)   <---------YAB1          --------->ANAC58  <----------ID1 ------->YAB1 --------->LBD16 <---------AHL20(2)               --------->ANAC58---------->DOF2   aacatcatgaatattcaggaaatcctgaaaatttaaacagaattatagtaatttctgaaaaactcaagaaattatggaataaaaagaaaaaagaaaaaac  24625500  Previous    Next  AGI:  At5g61150.1    Description:  VIP4 (VERNALIZATION INDEPENDENCE 4). similar to hypothetical protein [Vitis vinifera] (GB:CAN72101.1); contains InterPro domain Leo1-like protein (InterPro:IPR007149) Range:  from: 24620882    to: 24624951    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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