Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->At4g35610                                                      <------MYB83                                                      <------MYB46(1)                                                      <---------MYB46(3)                                                      ----------->GT1                                                     --------->ALFIN1                                                     <---------DEAR3(1)                                                     <---------AtMYB61      --------->ALFIN1                              <---------ABI4(1)   --------->DAG2                                  <---------ANAC46--------->ALFIN1           -------  ---------->DOF2                                 <-----------------------TaNAC69(2)          <------ ------>ANAC81                              ---------->DOF2<---------At4g35610    <---------ANAC46   aagagaaagtggagagacacagagagagatagagagcaagtagagagaaagaggggtggtgagatgagagagtggctacttgttctgtgtcttcttgtct  24606800                                      <---------ARR11(3)                                  ---------->DOF2                ------->TEIL     --------->AHL20(2)                                <---------YAB1               --------------->AtSPL8     ---------->DOF2                               --------->TOE2(3)             <---------------AtSPL8    --------->AHL20(2)      *TSS          <----------DOF2   --------->ARR11(3)     <---------------AtSPL3    <---------AHL20(2) --->ID1  <----------DOF2<-----------GT1                <----------DOF2 <---------AHL20(2) ---CCA1(2)  <---------YAB1   <---------ICU4      --------->REM1(2)  ------->TEIL <---------AHL20(2)   cttctcaaaacccttttgaatgcttttttacatcattaaagaacttagctcgtgtagactttttttgtacgtatatttttagatttaaattaaagacaca  24606900                        <---------AHL20(2)                       <---------AHL20(2)                       --------->AHL20(2)                    --------->AHL20(1)                    --------->AHL20(2)                 <---------AHL20(2)      --------------->AtSPL8                          <---------AHL20(2)      <---------------AtSPL8                       --------->AHL20(2)      <---------------AtSPL3                       <---------AHL20(2)                   <---------At4g35610    <------------CBF<---------AHL20(2)            <---------AHL20(1)                    --------->At4g35610   -------->ATHB1 <---------AHL20(1)              --------->AHL20(2)                  --------->DAG2   --------->ATHB12--------->AHL20(2)             <---------AHL20(2)           ----------->GT1   --------->ATHB51<---------AHL20(2)      --------->DAG2               <------ZmHOX2a(1)  <---------YAB1  --------->AHL20(2)     ---------->DOF2        <-----------RAV1(1)  ---------->DOF2   tcgtattattggtacttcaaaataatttaaaatgacttattgtaaaaggcaatttttttattttttgtgttgcaggatgagatgtgaaaaagctgattca  24607000                                                              <---------ICU4                                                              --------->AHL20(2)                                                              --------->ATHB51                                                              <---------AHL20(2)                                                              <--------ATHB1             <---------ANAC58                                --------->ICU4             <---------ANAC58                                <---------ATHB51            --------->ATHB12                                 <---------ATHB12           <---------YAB1                                  --------->YAB1 --------->ARR11(3)            --------->ATHB51          ------------>CBF --------->ARR14(3)            <---------AHL20(2)       --------->YAB1 <---------ARR14(2)    --------->ARR14(2)         ----------->GT1                                   < --------->GLK1(2)<-----------HVH21             ---------->DOF2               <------------CBF     -- <---------ARR11(3)    <---------ARR14(2)  <---------------AGL15       <---------At5g28300     <----- <---------ARR14(3)  ----------->ARR10     --------------->AGL15     <---------ZAT14          -------   gaaaatcttgttcatgcttgggtcagatttgaataatttgttttgcaaaaaaaagaaataacaataatttgtttactgtgtattggccattctaaatttt  24607100                                        <---------ANAC46                                    <---------AHL20(2)          ----------->GT1                                    <---------AHL20(1)        <---------ANAC58                    ---                                    --------->ARR11(3)        <---------ANAC58                   ----                ----------->GT1   <---------AHL20(2)     <------------CBF                      ------          <---------ICU4          <---------AHL20(1)   <---------YAB1  <---------AHL20(2)     <------         --------->ICU4    --------->DAG2          <---------YAB1     <---------AHL20(2)      <------ ---------AHL20(2)        ---------->DOF2       --------->AHL20(2)    --------->AHL20(2)   ---------- ------->AHL20(2)--------->At5g28300--------->AHL20(1) <---------AHL20(2)      --------->AHL20(2)<--- ----AHL20(2) <---------At5g28300--------->YAB1 <---------AHL20(1)   <---------YAB1       ----------- -->AHL20(2) <-----------GT1----------->GT1     <---------AHL20(2)<---------YAB1  <---------GLK1(2)   ataaaatcgacataattacagtaaaaaaaaaagtataatattttgtgtattttatttttaattgtcttgttattaattcaaaaaaattctctaccaataa  24607200                                                                                            <--------                                                                              <---------ARR11(3)                                                                              ------->TEIL <---------ANAC46                                                                              <---------ARR14(2)                                                                              <-----------ARR10                                                                              <---------ARR11(1)                                                                              --------->ARR14(2)                                                                             <---------CCA1(2)<------                                                                             <---------ARR14(1) -----                                                                            --------->LBD16<------MYB46(1)                                                                           <---------ANAC55(2)-------                                                                           --------->ANAC55(2)<------                                                                        --------->TCP20    <---------DEAR3(2)     ---------->DOF2                                                    --------->TCP16(1) <------MYB83 --------->YAB1                                                         <---------ARR14(2)<---------MYB46(3) --------->AHL20(2)                                                     --------->ARR14(2)<---------DEAR4(1) ------>YAB1                                                            --------->TCP11(2)<---------DEAR3(1) ----->ICU4                                                             --------->PCF5  --------->ARR14(2) --->YAB1                                                              <---------TCP16(2) --------->MYB46(2) ---ATHB51                                                         <---------ANAC46     <---------ARR14(2) ---ATHB12                --------->ZAT18                 <---------O2--------->WRKY12<---------MYB46(3) ----->AGL15--------->ATHB51     ------->GAMYB            --------->O2--------->WRKY38(1)<--------P ------YAB1 --------->AHL20(2)<---------ALFIN1     ---------->DOF2 <---------ANAC58  <---------ANAC58 ->CBF   --------->YAB1   <---------ZAT18       --------->YAB1     <---------ANAC58  <---------ANAC58   taataaaaaaagaataatttagtcatggtccacaactccccatgtaataaacataaaacgacgtcgatttcgtggacccgtatcttagcgggtcggtgta  24607300                            <------NtERF2                           ------>NtERF2                              <---------RAP2.6(3)                          --------->ANAC46                            --------->ORA47(1)                          --------->DEAR3(1)                          ------>NtERF2                          <---------DEAR3(1)                         --------->DEAR3(1)                        <---------ATERF1(1)                          <---------ETT(1)                       ----------->HVH21         ==================HOX2a_HOX2a                       ------->GAMYB   --------->ANAC58              ----------->HVH21                       --------->DEAR3(1)        ------>ZmHOX2a(2)  --------->DEAR3(2)                      <---------MYB55(2)        ===================HOX2a_HOX2a                      --------->DEAR3(2)        <------ZmHOX2a(2)  <---------At4g35610                      --------->MYB46(3)   --------->ANAC58        --------->At4g35610 -------AtSPL3        <------------AtMYB77 --------->ANAC58      <---------GLK1(1)      ----------->RAV1(1) ---ZAT14           --------->MYB52(1) --------->ANAC58          --------->GLK1(1)      --------->AtMYB61 ---->SPL7        <---------MYB59      --------->ANAC46     <---------LBD16            --------->ANAC46 -->ZAT14       <-----------ARR10 <---------HSFB2a(2)       ------>ZmHOX2a(1)----------->GT1   <----- ---SPL7        --------->GLK1(2) --------->HSFB2a(2)       <---------HSFB2a(2)      --------->ANAC46   cgggcctatttgttcaagtatctaaccgacgccgttttagaacgcaagcgatcgccttcttcctcggagagccgaccagaggtgaaaacaccacagagga  24607400          --------->ANAC46                              ----------->HVH21          <----------ID1                              <---------ANAC58          --------->ANAC58                            <---------ANAC58          --------->ANAC58                   <---------ZAT2    <---------ARR11(3)      ------>ZmHOX2a(1)                      --------->ZAT2  --------->ANAC58     --------->TOE2(3)                       --------->At4g35610                               <-----  <---------ARR14(2)<-------TEIL             <---------At4g35610                          <------ZmHOX2a(2)  --------->GLK1(2) --------->ZAT14    --------->MYB52(2)    --------->ANAC58    <---------ETT(2) -ZmHOX2a(1)        <---------ZAT14<---------YAB1  ------>ZmHOX2a(1)         <---------DAG2    <-----   gaagaatcctaaacgacacaagtacagggattttgtcatgttagttcagcttcctcgcttgacaagctctcttagagagcctttcgacatcgatcaggct  24607500       <------NtERF2       ------>NtERF2       --------->LBD16      --------->ANAC46      --------->RAP2.3(2)                             <-----------GT1      --------->DEAR3(1)                         <---------MYB52(1)      --------->RRTF1(2)                      <-------TEIL      --------->RAP2.6(2)                   --------->ARR14(2)     <---------LBD16                        <---------ARR14(2)     --------->RAP2.3(1)                   <---------ZAT2 ----ANAC58       --------->ANAC46         --------->ZAT2<----------DOF2 ----ANAC58    --------->ZAT14            <---------TOE1(2) --------->HSFB2a(2)   taccttcgccgcaaaactatactccaaactcttaataagcctcgcaggtccgtttttttctttccgaactgattccactcgtttactaagttttcagcga  24607600                    <----------DOF2               <---------ANAC58               <------MYB83               <------MYB46(1)               <---------ANAC58              --------->MYB46(2)              <---------MYB46(3)              --------->MYB111(2)              --------->MYB111(1)                     --------->YAB1           --------->ANAC58              <---------AtMYB61          --------->ZAT14                       --------->ANAC58            <---------MYB52(1) <---------YAB1   <---------At4g35610          ---------->DOF2   gttctatagcatctgtttggtgctatatcgaatttgatagttgtatagtctggtgatcacaatgtctaagtagaatttggaaagcatttggaaatacttg  24607700  Previous    Next  AGI:  At5g61130.1    Description:  glycosyl hydrolase family protein 17. Identical to Glucan endo-1,3-beta-glucosidase-like protein 2 precursor [Arabidopsis Thaliana] (GB:Q9FNQ2); similar to E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64440.1); contains InterPro domain X8 (InterPro:IPR012946) Range:  from: 24604439    to: 24606806    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61140.1    Description:  DEAD box RNA helicase, putative. similar to U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42270.1); similar to EMB1507 (EMBRYO DEFECTIVE 1507), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G20960.1); similar to hypothetical protein OsJ_009528 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26045.1); similar to hypothetical protein OsI_010260 [Oryza sativa (indica cultivar-group)] (GB:EAY89027.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68720.1); contains InterPro domain Sec63 (InterPro:IPR004179); contains InterPro domain Helicase, superfamily 1 and 2, ATP-bi Range:  from: 24607225    to: 24620740    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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