Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <------ZmHOX2a(1)                                ----------->HVH21 --------->ANAC46             <---------At4g35610 --------->ANAC58             --------->ZAT2 --------->ANAC58             <---------ZAT2 --------------->AtSPL8 -->MYB46(1)                  --------->At4g35610  <---------MYB59 -->MYB83                     ----------->RAV1(2) --------->ANAC58 ----MYB59                  <-----------RAV1(2)   --------->ANAC58                          <-------- -->ANAC46             <---------GLK1(2)<------ZmHOX2a(2)                                <---------AHL20(2) ---------->AGL1       --------->ARR14(2)   ---------->DOF2                   --------->HSFB2a(2)  --   aacaaggaagaacaaattgagaccagtttctcagctgacaggatcagaaagtacccaatttgactaaatttgagcattttctagggcttatattatcaaa  24587900                                                              --------->HSFC1(2)                                                              <---------HSFC1(2)                                                        <---------ZAT2                                                        <---------At4g35610                                                        --------->ZAT2                                                   ------>NtERF2                             <-------              --------->ANAC58                     --------->LBD16                         <------NtERF2              --------->ANAC58                    <---------DEAR3(1)                      <---------DEAR3(2)           <---------SPL7                     <---------HSFC1(2)                        --------->ALFIN1          --------->RAP2.6(2)                 --------->HSFC1(2)                        <------------     ---------->DOF2                  <----------DOF2   --------->At4g35610          <---------RAP2.6(2) -YAB1    --------->DEAR3(1)       ------->TEIL  <---------LBD16       --------->LBD16 <-----------HVH21 ------->ANAC46           ---------->DOF2     <---------HSFB2a(1)     --------->HSFB2a(2)--------->ETT(1)   caaacaacaaagccgcacgaagaagagagaaagtatgaacctttgagaaactccggcgagctgaagcttctcccagataactctgatgcggtcgggacac  24588000                         <---------ANAC58                      --------->ALFIN1                    --------->ALFIN1                  <---------O2                  <---------TGA1a                  --------->TGA1a                  --------->O2                  <---------At4g35610                  --------->At4g35610                <---------MYB55(1)                <-----------RAV1(2)               <---------MYB52(1)               <------NtERF2              <---------RAP2.6(3)              <-----------TGA1              <---------SPL7              <-----------HVH21                                                             <--------             --------->RAP2.3(3)                                                         <---------At5g28300             --------->ATERF1(2)                                                      <---------DAG2             <---------ATERF1(2)                                                   ------>NtERF2             --------->DEAR3(1)                                          <---------MYB46(3) <--------            --------->RAP2.3(1)                                    <---------At4g35610<----------DOF2          --------->ANAC46                                     <----------DOF2   --------->LBD16       ------>ZmHOX2a(2) <---------bZIP60(2)                ------>MYB46(1)      ------>NtERF2     --------->ARR11(3)  <---------ANAC58                   ------>MYB83 <---------DEAR3(2)--------->ANAC46     <---------ARR11(3)  <---------ANAC46                  <---------ALFIN1     --------->ANAC46 --ZAT18 ------>ZmHOX2a(1)                                --------->MYB46(3)    --------->LBD16 ---------WRI1------>NtERF2                   ----------->GT1 <---------DAG2   <---------LBD16   tcagggtgatcctcgccgtcaggtgtgtcgtgtttgcacatcgtctcgtcgtaaataagacccacctttcgctgtctgttccccgcgactttaccgtcac  24588100                      --------->GLK1(2)                     --------->ARR11(3)                     <---------ARR11(3)                     --------->ARR14(2)                     <---------GLK1(2)                     <---------ARR14(2)                    <---------HSFC1(2)                    --------->HSFB2a(1)                --------->DEAR3(1)                    <---------HSFB2a(1)               --------->ATERF1(1)                    --------->HSFC1(2)              ----------->HVH21                   ----------->ARR10    --------->ARR14(2)                 <------NtERF2          <---------ARR14(2)                --------->LBD16      --------------->AGL15               <---------ATERF1(2)   <---------------AGL15               --------->HSFB2a(2)  ----------------->AG------>NtERF2               <---------HSFB2a(2)  ----------------->AGL2               --------->ATERF1(2)  <-----------------AGL2                                        ---               --------->ETT(1)     <-----------------AGL3                                       <---       <---------AHL20(2)           ----------------->AGL1 <----------DOF2                      <----       --------->AHL20(2)   ------>NtERF2       <---------At4g35610                            ------       <---------AHL20(1)   --------->LBD16     <---------GLK1(1)                             ------- ---HVH21     <---------LBD16------>NtERF2      --------->At4g35610                    ----------->GT1 ---TGA1<---------AHL20(2)<---------LBD16       --------->GLK1(1)         <------ZmHOX2a(2)  --------   agtctccaatttttttgccggaagattctccggccatagccataactgggagatgcgacggccttattgttcgacgatcagtgagaaggaagtgaaaaag  24588200 ------>WRKY18(1) --------HVH21                                                                        <---------TOE1(3) ------ID1           ---------->DOF2                 <----------DOF2      <----------DOF2 --->DAG2      <---------ZAT2              <----------DOF2    <-----------GT1         <---------TOE2(3) -->DAG2       --------->At4g35610         <---------DAG2 <------------------------ANAC81 -->DOF2       <---------At4g35610      <-----------GT1  <----------DOF2  <---------DAG2    *TSS    <   gtcaagtctttgctctcagcttctaaagcttccaagtattttttacttttcaattctttctttttttcattctctccttttttttttttaggtttgagag  24588300                                                                   --------->TGA1a                                                                   ==================================                                                                   --------->ANAC46                                                                   --------->bZIP60(2)                                                                   ==================================                                                              ----------->HVH21                                                        =====================bZIP_DOF                                                        ---------->DOF2                                                       --------->YAB1                                                      <---------ATHB12                                                     ------>MYB83  --------->ANAC58                 <----------DOF2                     ------>MYB46(1)         <------MYB83           <              --------->GLK1(2)                     --------->WOX13(1)       <------MYB46(1)     ----             <---------ARR14(2)                   --------->MYB46(3)       <---------MYB52(1) -------             <---------GLK1(2)                    ------------>CBF --------->O2   ------------>CBF  <  ------------>CBF                               --------->ANAC58  ----------->HVH21        --------- ---------WRKY18(1)         <------------CBF     --------->ANAC58  --------->ANAC58    --------->YAB1   tttgaccaatttggagattctttggagggaaattgggaaaccaagtatcgcaaccaatcaaagtctgacacgacacagttggtttacaatcacaaaaagg  24588400    <-------GAMYB                                                    ------->GAMYB   <---------MYB46(3)                                                --------->AtMYB61   ----------->GT1                                                  --------->MYB46(3) ==bZIP_DOF                                                        -------->P ===========MYC_MYB                                     --------->LBD16        <---------ARR14(2) ---------ANAC46                                       <---------HSFB2a(2)  --------->ANAC46        - ----->GLK1(2)                 --------------->AGL15   --------->HSFB2a(2) --------->HSFB2a(2)   <--- -->DAG2                   <----------DOF2  <-----------RAV1(1)   --------->WOX13(1)             ---- -----------RAV1(1)     <-----------GT1  <---------ARR14(2)       <-----------GT1    <---------AtMYB61 ->DOF2          >>>>>>>>>>>>>>>>>LFY    --------->ARR14(2)<---------ZAT2  <---------HSFB2a(2)<------   ttctgtggttacaatgaaacaccattgtactttctaagaagggtatatgttgctcttcccgagcttatcaaccatctcgcgaaacttgtggtagtcttct  24588500                                                                      <----------DOF2                                                                   --------->ARR14(2)          <---------At4g35610                                      <---------ARR11(3)          --------->ZAT2                                           <---------ARR11(1)         --------->ANAC58                                          --------->ARR11(3)         --------->ANAC58 --------->ZAT18                          <---------ARR14(2)       ---------      <------NtERF2  ---------->DOF2                              <---------CCA1(2)         --------- -------->SPL7     --------->TOE2(3)                         --------->ANAC58               <-------- ------At4g35610 -------->P ----------->RAV1(2)              --------->ANAC46         <---------ANAC46 ----->At4g35610 ------>MYB46(1)                             --------->ANAC58  <-----------------AGL3 ---At4g35610    ------>MYB83                              <---------ALFIN1   ------->TEIL  ---------   gctacggcctcaagctcccaacctaaagtaccctggctctctcactggcgataaacttgatacactccatatcttttatgaacttcttgtgggaacgctc  24588600      <---------ANAC58      <---------ANAC58        --------->ARR11(3)  --------->ATHB12 >ANAC58                      <---------ARR11(3) <---------YAB1----------->HVH21 >ANAC58        ----------->HVH21    --------->LBD16         --------->LBD16 -HSFB2a(1)   --------->At4g35610   <---------ANAC58       <---------LBD16   <---------ZAT2 >HSFB2a(1)   ----------->RAV1(2)   <---------ANAC58    <---------GLK1(1)<-------TEIL    <-------TEIL   catgtttttcttgatgacctgaaacggttcaagctcttccgagtccatgtcttcattgaactccggagacagaggttcgagctcgtctaagtccatgtct  24588700                         --------->ARR14(2)                         <---------ARR11(3)                         --------->AGP1                         <---------GLK1(1)                         <---------ARR14(2)                     --------->GLK1(1)                --------->DAG2                           ------>ZmHOX2a(1)              ---------->DOF2       <---------ZAT2   ------>MYB83         ------>ZmHOX2a(1) <-------TEIL              --------->ARR14(2)       <---------ANAC58         ========================HOX2a_HOX2a         ------>MYB46(1) ------>ZmHOX2a(1)       --------         --------->LBD16 --------->ARR11(3)          <---------ARR14(2)       <---------ANAC58     <-       ----------->RAV1(2)<------ZmHOX2a(2)     <---------WRKY18(1) <---------ANAC58  <----------DOF2    <---------GLK1(1)---------->DOF2--------->ZAT2 <---------MYB59  <---------ANAC58<---------At4g35610   tcatagaactcctgagaaaaggcaaaagatccattcccaactcggcttcttgacctatcctcttggagttccttatctatgcgttcagcttttgctacgg  24588800  Previous    Next  AGI:  At5g61060.1    Description:  HDA05 (HISTONE DEACETYLASE5); histone deacetylase. Identical to Histone deacetylase 5 (HDA5) [Arabidopsis Thaliana] (GB:Q8RX28;GB:Q9FNQ7;GB:Q9FNQ8); similar to HDA18 (histone deacetylase 18), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61070.1); similar to RPD3 histone deacetylase homolog [Zea mays] (GB:NP_001105019.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64436.1); similar to hypothetical protein OsI_025853 [Oryza sativa (indica cultivar-group)] (GB:EAZ04621.1); contains InterPro domain Histone deacetylase superfamily (InterPro:IPR000286) Range:  from: 24584017    to: 24588292    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61070.1    Description:  HDA18 (histone deacetylase 18); histone deacetylase. Identical to Histone deacetylase 18 (HDA18) [Arabidopsis Thaliana] (GB:Q8LRK8;GB:Q9FNQ7); similar to HDA05 (HISTONE DEACETYLASE5), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64436.1); contains InterPro domain Histone deacetylase superfamily (InterPro:IPR000286) Range:  from: 24588397    to: 24591598    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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