Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->TGA1a                    ----------->GT1                                        <---------TGA1a           --------->CCA1(2)            --------->At4g35610   --------------->AtSPL3      <------ZmHOX2a(2)           --------->MYB52(1)          --------------->AtSPL8        <--------     --------->ARR11(3)          --------->ARR14(2)         --------->GLK1(2)          --------->ATHB12     <---------ARR11(3)      <---------LBD16           --------->ANAC55(2)<-------MYC3 <---------ICU4 ---------->DOF2  ---------->DOF2<---------ARR14(2)  --------->MYB52(1)   ------->MYC3<---------YAB1   tagaaaagatcagatatatgaaaagagaaaactcggaaacggagatgaagaaacttaacgtgattctgtacaaacacatgtgagtttgatcattgagatt  24583400                    <---------ALFIN1               --------->ANAC58               --------->ANAC58--------->ANAC46               --------->ANAC46--------->ANAC58                --------->MYB46(3)           <---------REM1(1)   --------->ANAC58              <-----------GT1                        <         <------MYB83        <---------ALFIN1                --------->YAB1                        <-        <---------AtMYB61    --------->REM1(1)      --------->ANAC46                             <---      <---------ARR14(2)   ------>ZmHOX2a(1)       <---------At5g28300                       <------- -TOE2(3)<------MYB46(1)------>ZmHOX2a(1)       <-----------HVH21                         <---------ICU4   agtaaggggattggtgtaagcaactcctcctacaccccaaaacattgaagtttcacggccaaataacaatcgatgtggaaatgttttccacattatttcc  24583500                                     <---------YAB1                                    <-----------GT1                                   --------->YAB1                                <----------DOF2                            <-------MYC2                            ------->MYC2                            ------->MYC3                            <-------MYC3                         <---------ALFIN1                       <-----------HVH21                       ----------->RAV1(1)       <----------DOF2----------->HVH21   --------->ZAT18    <---------ETT(1)<---------ICU4                                            -----   <---------ZAT18    --------->DREB2C(2)                                                      ------ ---------ANAC46      --------->DEAR3(1)                                                       ------ --------AtMYB61      --------->At1g77200                --------->AHL20(2)           <---------ICU4 -------DOF2         --------->MYB46(3)            ----------->GT1                 --------->WOX13(1) ----GT1             --------->DEAR3(2)         ------>NtERF2      --------->MYB46(3) --------->YAB1   tttggtggacttttgtccattgaaccgacacatgcttttatcattccctcggcctgaaaataaacacaaacagccatagatgtgtcaattaagacacaag  24583600                                                                                     --------->LBD16                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC55(2)                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2) -                --------->ANAC58     ---------->ARF1                             --------->ARR14(2) -         ---------->DOF2             ---------->ID1                        <-----------RAV1(1)      - ---->ZAT2      --------->ANAC58 <---------ANAC58                         <-------MYC3            <-- --->ANAC58    <-----------------------TaNAC69(2)                         ------->MYC3            <-- --->ANAC58   --------->MYB52(1) <---------ANAC58             --------->TOE2(2)  <---------ARR14(2)--   ctcagactccaaaaagaaacgaaacaaggctacttacttgtcccccttgaatatagcaaataaacctcggtttccacatgttggatccgtaagaggcata  24583700                                                                                            ---------          <----------DOF2                                                          <---------DAG2         --------->TOE2(3)                                                        <---------ANAC58     <---------WRKY12                                                             <---------ANAC58    --------->DOF5.7(2)                                                         ------>NtERF2------>NtERF2   --------->TOE2(3)                                                          <---------ANAC58  <----   --------->TOE1(3)                                                          <---------ANAC58  <----  --------->ANAC46                                                           --------->ZAT2<------NtERF2  --------->ANAC58           --------->LBD16                                 <---------ZAT2--------->RAP2.3(1)  --------->ANAC58          <---------LBD16  <---------ARR14(2)           <---------ANAC58--------->LBD16 ----->MYB83  <---------ANAC58   <---------REM1(1)                      ------->TEIL      ------>NtERF2 -------->MYB52(1)          <-----------RAV1(2)                       <---------ZAT14    <---------LBD16 ----->MYB46(1)    <------ZmHOX2a(2)         --------->ARR14(2)       --------->ZAT18    --------->LBD16 -------MYB59 <---------ANAC58 <------ZmHOX2a(1)                      <---------ZAT18   <---------LBD16 -------MYB46(2)   ===================HOX2a_HOX2a                    <---------ZAT6<----------DOF2 <- ------->MYB55(1) <---------ARR11(3)      ----------->GT1 <----------DOF2 <---------ANAC58<---------ATERF1(1)   ccaaacgtcaacctttgcgagatcaattctccaggatgtagaagcggtatctacttgctccttttcaactagtgtaccttgctggcttttcccggcgact  24583800                                      ------->MYC3  <-----------HVH21                   <-------MYC3  <-----------TGA1                ----------------->AGL1 --------->ANAC46          <------NtERF2<---------LBD16--------->GLK1(2)   ----------->GT1 >DEAR3(1)               <---------RAP2.6(2)  <---------At4g35610      <---------ZAT2 -----DAG2               --------->ETT(1) --------->LBD16       --------->SPL7    ---------->DOF2   < ------DOF2             --------->RAP2.6(3)   --------->At4g35610      --------->ZAT2              <- --------At5g28300    <-----------RAV1(1)<---------LBD16      <---------SPL7 ----------->GT1   ------   ttaccgtcacagtttccatattttttgtcggccatggccatatgcgggagatgagagagtctatcgttcgacgagcagggagaaaaaagagaaatggtcc  24583900                                          <---------AHL20(2)                                         <---------YAB1                              --------->ANAC55(2)                                                   <     <---------ANAC58         <---------ANAC58                                                      <     <---------ANAC58         <---------ANAC58  <-----------GT1          <---------AHL20(2)         - ---------ICU4               <---------TOE2(3)<---------AHL20(2)         --------->AHL20(2)    ------ --------ATHB12             <-----------GT1 <-----------TBP       <----------DOF2       <---------WRKY18(1) ------>CBF       ---------->DOF2 ------------>CBF        ------------>CBF         --------->MYB52(2)   aatctttgcttctgaagcttcaaagtatttttacgtttcaatttttatttatacatgttttccaatctcttttttttaaataggtttgtttgaccagaac  24584000          <-------GAMYB         ----------->GT1                                                                   --------->DAG2       --------->ZAT14        <-----------GT1                                             ---------->DOF2       <---------ZAT14     --------->YAB1                                              ----------->TBP ---------ZAT14          --------->AHL20(2)               --------->LBD16          ------------>CBF ---------REM1(2) <----------DOF2                <-----------GT1 --------->YAB1    --------->WRKY18(1) -------->ZAT14--------->ARR11(3)             --------------->AtSPL8             --------->LBD16 --->GLK1(1)   <---------ARR11(3)            ---------->DOF2  --------->YAB1   <---------LBD16   tcttcacagtgctgttaaatctttttttaaaataactcttcaaacttcaaagtaccattccgaagaataagaatgtttctctccggtcaatataaagcag  24584100                                 <----------DOF2                                <---------GLK1(2)                     <---------At5g28300                                                           --                    <-----------GT1                                                              ----         <----------DOF2       <---------At4g35610                                             ------    --------->HSFB2a(1)   <---------ARR14(2)           --------->LBD16                         ------    <---------HSFC1(2)    --------->ARR14(2)     ---------->DOF2      <-------TEIL  <---------ANAC58    <---------HSFB2a(1)<---------MYB59   ---------->DOF2   <---------ARR11(3)       <---------ANAC58-   tttggagggttctttaatacatttaccgaatacagcttcttggtaaagcctaaaacccgaagataactaaaatacattgagagtttgcttagggagcaag  24584200         --------->MYB52(1)        ----------->HVH21       <---------MYB52(2)      --------->ZAT2      <---------At4g35610      --------->At4g35610  <---------ALFIN1 --------->ZAT14                                                                          --------->AHL20(2) <---------ZAT14              <----------DOF2                                            <---------WOX13(1) ------->ANAC46           ------>ZmHOX2a(1)                       ------>ZmHOX2a(1)   <---------YAB1 ----->YAB1             --------->ZAT14                     <---------KAN4(1)         ------>ZmHOX2a(1) --->ANAC58      --------->ZAT18                   --------->ARR11(3)                --------->TOE2(3) --->ANAC58     <------ZmHOX2a(1)  ---------->DOF2 <---------ARR11(3)               --------->YAB1 ---------->RAV1(1)     <---------ZAT18        ---------->DOF2   --------->TOE2(3)<-----------GT1   cacaacacagctaacagaggacacagtcctctctttcaaaagacaaattcaaaggtctcacaatattcctaaacttgtggtttttatcctaattgaataa  24584300  Previous    Next  AGI:  At5g61050.1    Description:  histone deacetylase-related / HD-related. similar to HDA05 (HISTONE DEACETYLASE5), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64436.1); contains InterPro domain Histone deacetylase superfamily (InterPro:IPR000286) Range:  from: 24582708    to: 24583841    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61060.1    Description:  HDA05 (HISTONE DEACETYLASE5); histone deacetylase. Identical to Histone deacetylase 5 (HDA5) [Arabidopsis Thaliana] (GB:Q8RX28;GB:Q9FNQ7;GB:Q9FNQ8); similar to HDA18 (histone deacetylase 18), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61070.1); similar to RPD3 histone deacetylase homolog [Zea mays] (GB:NP_001105019.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64436.1); similar to hypothetical protein OsI_025853 [Oryza sativa (indica cultivar-group)] (GB:EAZ04621.1); contains InterPro domain Histone deacetylase superfamily (InterPro:IPR000286) Range:  from: 24584017    to: 24588292    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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