Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->TOE1(3)                        --------->AHL20(1)                        --------->AHL20(2)            --------->DAG2                        <---------AHL20(2)           ---------->DOF2             <---------ARR11(3)   --------->YAB1  --------->YAB1 -------->LBD16         <---------AHL20(1)    --------->MYB46(3)           --------->ANAC58 ------->LBD16         <---------ATHB12  --------->TOE2(3)      --------->TOE1(3) -------LBD16<---------GLK1(2)   <---------YAB1  <<<<<<<<<ARR2  --------->TOE2(3) -------->RAV1(2)<-----------GT1 --------->ICU4--------->WOX13(1)          --------->ANAC58 ----DOF2    --------->ARR11(3)  <---------ATHB12<---------ATHB12<----------DOF2   ccctgaaacacattagatttttccaattaattgcaatgataaaccctaacaatcaaaaagttgcaacctttacaatctcgcaaacacttaaactcagaac  24566200                                   --------->TOE1(3)                                <-----------GT1                           <------ZmHOX2a(1)                         --------->ANAC58                         --------->ANAC58     ---------->DOF2                     --------->YAB1--------------->AGL15                 <---------AHL20(2)--------->TOE2(3)                   <---------HSFB2a(2)        ---  ------->TEIL  --------->AHL20(2) <---------------AGL15       <----------DOF2                    ---   taagaacctctaaaacgatttaatcgtaaggaatttaccttcaagagcaaaaggaagggcttcggcttgaattttggaagggttcttccatcccaatctc  24566300                                <---------ARR11(3)                               --------->ZAT2                               <---------ZAT2                         --------->ANAC58                         --------->ANAC46                                              ------>MYB83                         --------->ANAC58                                              ------>MYB46(1)            --------->ANAC58  ------>MYB46(1)                                         ===============            --------->ANAC58  ------>MYB83                                            ----------->RAV1(1)     <----------DOF2   <---------ALFIN1                                    --------------->AtSPL3  --------->ANAC58   --------->ANAC58                                      --------------->AtSPL8  --------->ANAC58   --------->ANAC46                                    <-----------GT1   --------->ARR14(2) ------>ANAC58       --------->ANAC58                --------------------->WRI1--------->ZAT14 ------>ANAC58    ------>ZmHOX2a(1)           <---------ZAT14     ------>ZmHOX2a(1) --------->MYB46(3)   tcgcaagctttaacaagctcctcacgcacaccaagctctgcaaacgtcttcactacttcgttctcttcctccatttttcagtactcaccaacaaatttgc  24566400                                                                    --------->LBD16            ---------->DOF2                                         ------>NtERF2       ------->TEIL <---------MYB52(1)     <------ZmHOX2a(1)       <---------LBD16    ------>ZmHOX2a(1)                     ----------->GT1         <---------LBD16    --------->LBD16<---------RAP2.6(3)   <---------TOE2(3)     <---------GLK1(1)    --------->HSFB2a(2)                  <---------TOE1(3)     --------->GLK1(1)   <----------DOF2    <---------HSFB2a(2)        --------->MYB52(1)             <---------ICU4   --------->ANAC46  ----------->RAV1(2)--------->SPL7  <----------DOF2        <---------TOE2(3) <---------LBD16 =============RAV  <---------SPL7   <---------ANAC46    <----------DOF2     <-------TEIL            <   tatctcctggacctcaaaggccgtaagggaatcaaacggcgttaaggaaaaatcgcgactttaagaattccggcgaggttcacggctttagataagtcga  24566500                                                                                                    -                                                                                                    -                                       --------->At4g35610                                          =                                       <---------At4g35610                                          <                                   <-------GAMYB                                                  <--                 --------->YAB1   <---------MYB46(3)                                           ------           <-------TEIL           --------->MYB55(2)                                          <------       <---------------AtSPL8     --------->MYB52(2)                                         <-------    <---------MYB52(1)            --------->MYB111(2)                                        --------   --------->TOE2(3)              <-----------RAV1(1)            *TSS                      <---------YAB1 <---------TOE2(3)            <---------ZAT6  ---------->DOF2  --------->STY1(2)      ----------->GT1 ---------DOF5.7(2)--------->At4g35610<---------MYB46(3)     >>>>>>>ZML2           <-----------RAV1(1)   gtaaacgttagggtacaaatcagaagagactagtgtttgttggctgagaaaagagagcgagttctagctatcaagggttttagttatgttgttattttaa  24566600          ----------------->AGL2          ----------------->AGL1          <-----------------AGL3    <------------CBF   ------>MYB46(1)   ------>MYB83 --------------->AGL15 <---------MYB59 --------->TOE2(3)   --------->ATERF1(1) ---------------->AGL1 ---------------->AG <---------ANAC58                          <---------MYB46(3) ===========================MADS_MADS                         <---------AtMYB61 -----------------AGL1                                        --------->ALFIN1 ---------GT1        <---------ANAC58                     <---------At5g28300 --->YAB1 ----------------->AGL3                         <<<<<<<<<<<<<<<<<LFY                 ------- ---YAB1<----------ID1                        <---------ARR11(3)              --------->ARR11(3) --AHL20(2)   --------->ARR14(2)              --------->ARR11(3)         --------->DAG2     --------- ->AHL20(2)   <---------ARR14(2)---------->DOF2<---------GLK1(1)        ---------->DOF2   <----------   taacctaattgggccaaatatgggcctgccttcttaaagtttggactagatatcacaaattacagtggtcgatgaaaagttatcttcacaaattacacaa  24566700                                            <---------AHL20(2)                                     <---------TOE1(2)                                ---------->DOF2                                    <---------ANAC46   -------->HAHB4     ----------->GT1 -->ANAC46                          <---------ANAC58   --------->YAB1   <---------ANAC58 >ANAC46      --------->At4g35610   <---------ANAC58  <---------YAB1    <---------ANAC46 -GT1         <---------At4g35610 ------>ZmHOX2a(2)  <---------TOE2(3)  <---------ANAC58 <----------ID1   ctctctatgactctacagctgtaaacacaaaatagatcgcttgtttttatttgttaatgataccgaaatggatggcttgtaaacaatgtaaagaacaaat  24566800                             <---------ARR14(2)                <---------AHL20(2)               <---------AHL20(2)               --------->AHL20(2)                   --------->DAG2         --------->TOE2(3)   --------->ARR14(2)    ---------->DOF2         --------->TOE1(3)   ---------->DOF2   --------->ANAC58                              -------- --------->ANAC58   --------->AHL20(2)         --------->ANAC46                         ---------->DOF2 --------->ANAC58   <---------AHL20(2)         --------->ANAC58 <----------DOF2 ----------->GT1  ----   tttaagcaaaaccctaattttataaattgcagaaaggcttatattatacaaggaaaagttttgagacttttttaggccaatagagaaaaaaaaagaagta  24566900                                                --------->GLK1(2)                                              --------->MYB46(3)                                         --------->ANAC46                                         --------->ANAC58                                         --------->ANAC58                   <-----------ARR10                                    <---------ANAC58          --------->At4g35610                                    <---------ANAC58         ----------->RAV1(1)                        <-----------RAV1(1) ----------->RAV1(1)            <------ZmHOX2a(1)   <----- --->GT1    <---------ARR11(3)      <---------ANAC46       <---------At4g35610           <---------At5g28300 ------>DOF2--------->ARR11(3) <---------At4g35610         --------->At4g35610       <----------DOF2   aaagctactactgagatgttttgttcttgttggagatgtcttgaagcaacaatcttgtttcagcagcaaaatcaagaggagctactccttttacagttac  24567000                                              --------->SPL7                                           --------->ANAC58                                           --------->ANAC46                                           --------->ANAC58                                          <---------LBD16                                        -------->P       ----------->HVH21                                     <---------MYB52(2)--------->At4g35610                            <---------ANAC46--------->LBD16    <-----------RAV1(1)            <---------At5g28300 ----------->HVH21      <---------At4g35610    <---------MYB52(1)<---- ----At5g28300  <---------MYB52(1) --------->ZAT6 --------->CCA1(2)     <----------DOF2    <-------TEIL   cctctgtctcttctcaccgttatactcattctgtgtgacactaacccggaagacatgagatgaccatgttgcctctttcagttttgtctgatattcattt  24567100  Previous    Next  AGI:  At5g60990.1    Description:  DEAD/DEAH box helicase, putative (RH10). Identical to DEAD-box ATP-dependent RNA helicase 10 (RH10) [Arabidopsis Thaliana] (GB:Q8GY84;GB:Q8LA24;GB:Q9FME1;GB:Q9ZS10); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G16280.1); similar to putative replication protein A1 [Trifolium pratense] (GB:BAE71224.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40492.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014 Range:  from: 24563656    to: 24566565    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g61000.1    Description:  replication protein, putative. similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G08020.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71402.1); similar to 70 kDa subunit of replication protein A [Ipomoea nil] (GB:BAF64713.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64422.1); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/he Range:  from: 24566804    to: 24569949    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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