Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                         --------->AHL20(2)                                                                  --------->TOE1(3)      <---------AHL20(2)   <-----------GT1           --------->AHL20(2)                   --------->TOE2(3)     <---------AHL20(1) -------->YAB1               <---------AHL20(2)                 --------->ARR11(3)      --------->AHL20(2) ----->TOE2(3)      <---------ARR14(2)                  <---------ATHB12                <---------AHL20(2) --TEIL             --------->ARR14(2)       <----------DOF2 --------->YAB1      ----------->GT1   attaataacatttgagaagtcgtatttgtgtttaatttttagtcgttctttatttctaatgaataataccttcaaacatcgagtagataattaatttaat  24560300                                             <---------ANAC46       --------->MYB52(1)                                          --------->ANAC55(2)       <---------DOF5.7(2)                                         <-------TEIL              <---------WRKY12                                        --------->CCA1(2)    <---------ARR14(2) ----YAB1                              <---------ARR14(2)    <---------ARR11(3)  <----------DOF2 --AHL20(2)              --------->YAB1--------->ARR14(2)    --------->GLK1(2)<-----------GT1 -AHL20(1)              <---------YAB1 --------->ARR11(1)    --------->ARR14(2)  <---------DAG2 >AHL20(1)        ---------->ID1 <----------DOF2       --------->ZAT6  ----------->GT1     --------->ANAC46 >AHL20(2)   --------->GLK1(2)--------->ARR11(3)  ----------->GT1  <---------WRKY38(1)   <-----------GT1 -AHL20(2)  <---------GLK1(2) <---------ARR11(3)  --------->YAB1 <-----------HVH21   --------->AHL20(2)   attgcaatatttcagaatttgttgttttcataaatcttttagatacgtcgtatagtaacacaaaatctgtcaacggtttataactttttatatacgaccc  24560400                                                                            <---------ICU4                                                                            <--------ATHB1                       --------->AHL20(2)                                   --------->ATHB51                     ----------->GT1                                        <------------ATHB5                     --------->ANAC58                            ---------->DOF2       --------->YAB1                     --------->ANAC58                          --------->ANAC58       --------->ICU4             <------ZmHOX2a(2)                                 --------->ANAC58     --------->YAB1             ========================HOX2a_HOX2a     <------ZmHOX2a(1)     <---------ATHB51            <---------ARR11(3)              <-----------------AGL1         --------->ICU4<---------REM1(1)            --------->ARR11(3)------>ZmHOX2a(1)    <---------TOE2(3)       <---------ATHB12      ----   aaaaccattctcaagatcaacacaagtaaatcctatttttgtaagtttctaataaggaaatgaacaagaaagacccaataattcaagaatgatgaagccc  24560500                                    --------->ZAT14                                   <---------ARR14(2)                                    <---------ZAT14                                   --------->ARR14(2)                              <---------MYB59                                     --------->SPL7                             --------->DEAR3(2)                                 <---------SPL7                           --------->ARR14(2)                                  <------MYB83                           <---------ARR14(2)                                  <------MYB46(1)                           --------->MYB52(1) --------->ZAT14                 <---------------AtSPL8                          <---------SPL7 <---------ZAT14                      <---------------AtSPL3                          <------NtERF2  --------->ZAT14                      --------->MYB111(1)                <----------DOF2 --------->MYB52(1)      ---------->DOF2       --------->MYB59               <---------ANAC58 ------>MYB46(1)    --------->ZAT14        <---------TOE2(3) ------>DOF2   <---------ANAC58 ------>MYB83  <---------ZAT14            ---------->DOF2   aaagtatgagtcttcttgcttcttgggccgaaccgaactgaactgaactgaactgaactaaagctaaactaaaactaaagttggtacggttccttctctt  24560600                                                                     ------>ZmHOX2a(2)                                                                     *TSS                                                                     ===================HOX2a_HOX2a                                                                    <------ZmHOX2a(2)                                                                    --------->GLK1(1)                                                                    <---------GLK1(1)                                                                    ====================HOX2a_HOX2a                                                                   <---------AGP1                                                                   --------->ARR11(3)                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)                                                               <---------At4g35610                                                               --------->At4g35610                                                              ----------->RAV1(1)                                                            <---------At4g35610                                                         --------->At4g35610                                                       <---------ANAC58                                                      --------->HSFC1(2)                                                      <---------HSFC1(2)         ====================                                                     <---------TOE1(2)        ---------->ID1                                                  <---------ANAC58 <---------ARR14(3)                                                  <---------ANAC46 <---------ARR11(3)                                                  <---------ANAC58 <-----------ARR10                                               <---------MYB52(1) <---------CCA1(2)              <---                                           ------>ZmHOX2a(1)--------->At4g35610  ------>ZmHOX2a(1)                      <---------At4g35610  ================================HOX2a_HOX2a           ----                  <-----------RAV1(1)      =================================HOX2a_HOX2a          <---                <---------MYB52(1)    ------>ZmHOX2a(1)<---------ANAC58   <----------DOF2      <-----        <----------DOF2               =====================================HOX2a_HOX2a         ------   ctctctctctctttctccgtctgtcgctgtctctctcgtcctctcctctgtttcgtagcttctgcagcagatctctctttgtccttctctctccctcaga  24560700           --------->ANAC58           --------->bZIP60(2)           --------->ANAC46           --------->ANAC58        --------->ZAT18        <-------TEIL        --------->ZAT14        ------>ZmHOX2a(1)  --------->At5g28300          ================HOX2a_HOX2a                       ------>ZmHOX2a(2) ===HOX2a_HOX2a              ----------------->AGL1                        --------->YAB1      ====== ---ZmHOX2a(2)    <---------ZAT14                                  <---------ANAC58            <----- ----->ZAT14      --------->ZAT14                      <----------DOF2    <---------ATHB12 <--------- ------ZAT14    --------->ANAC46                  <-----------GT1  <---------ANAC58 <----------DOF2 ----At4g35610  --------->bZIP60(2)     ------>ZmHOX2a(2)  --------->HSFB2a(2) <---------ARR11(3) --->At4g35610<---------ALFIN1<---------MYB59  <----------DOF2     XXXXXXXXXXXXXXXXXXXX>MIR773<------   tcactgtaagtacacgacacttcacttcatttcctaattcgatctgtttcttttactctttctcgatttgcttccaatcttgatctcttttctctttcta  24560800                                                                                                 <---                                                                                                 <---           ----------->HVH21                                                                     <---          ------>ZmHOX2a(2)                                                                   <------         <---------At4g35610                     <----------DOF2     --------->TOE2(3)        <------         --------->At4g35610                     <---------------AGL15                    <-------GAMYB        <---------AGP1        <-----------GT1    --------------->AGL15                   <---------MYB46(3) ===============================================================MADS_MADS                --------->MYB46(2) ----------AGL15         <---------YAB1  <---------HSFB2a(2)      <---------ARR11(3)     --------->MYB111(1) -DOF2  <---------ARR11(3)--------->AHL20(2)    --------------->AGL15<----------DOF2     --------->MYB52(2) -----------AGL2     <----------DOF2     --------->HSFB2a(2)      --------->ARR11(3)   <---------MYB52(1)   tatcgagcttgatctgactcattctttattatatacttctcttctcgattccttttttgtgaaaaaaacatctttaaaatttcatttttgttagttgctt  24560900     --------->ATHB12    --------->ICU4    <---------YAB1  <---------ANAC58  <---------ANAC58  <---------ANAC46                    ------>ZmHOX2a(2) ------ANAC58                       <---------ARR11(3)                                              - ------ANAC46               <---------TOE2(3)                <---------ANAC58                -------- ------ANAC58             <---------AHL20(2)                 <---------ANAC46                <------- ---ANAC58 <---------ZAT6--------->ICU4      <-------TEIL    <---------ANAC58            --------->ANAC46 ---ANAC58 <-----------RAV1(1)      --------->ARR11(3)     <---------ANAC46 --------->At4g35610------   cgtgtcttgattagtgttgttcttgtaataaatgttgtgatcttatattcattctagggttttgtgtgtgtgtgtatgagcttaatttcatacagaacag  24561000                             <----------DOF2        <---------TOE1(3)                         --------->WRKY45--------->ATHB51   --------->TOE2(3)     --------->WRKY12<---------ICU4 <---------ARR11(3)      --------->WRKY38(1)        --------->MYB59 --------->ARR11(3)     --------->DOF5.7(2)         <---------TOE2(3) -------->GLK1(1)      <-------GAMYB     -------->ATHB1                            --------->YAB1<--- ->ZAT14              ------>ZmHOX2a(2)  --------->ATHB12               <---------TOE1(3)    <------- --ZAT14            --------->ARR11(3)  <---------ATHB51                <---------TOE2(3)--------->ATHB12 ----->GT1          <---------ARR11(3)  --------->ICU4               <----------DOF2    --------->ICU4   tgaaatcttagactttcgattagatcgttgacttttatctgaattattggaatttaggttattgaatcagtctttaggttattgatcaaaatgatttact  24561100                   --------->ICU4                 --------->YAB1                 <--------ATHB1                 --------->ATHB51          --------->YAB1                 <--------HAHB4        --------->ATHB12                                          <---                 <---------ICU4       <---------YAB1                                             ----                <---------ATHB51      --------->ICU4                                             ----                <---------ATHB12  <---------WOX13(1)        ------>ZmHOX2a(1)                 <------      <---------GLK1(2)         <---------MYB46(3)        ----------->RAV1(2)                 -------    ----------->ARR10           --------->MYB55(2)   <---------YAB1           <---------GLK1(2) <---- ------ZAT14    --------->AHL20(2)<--------P    ----------->GT1             <---------YAB1  <-------- ----GT1        --------->ICU4 --------->ALFIN1<---------TOE2(3)   ----------->GT1          ---------   tcagagaagattgtctcaataattactaacacagtggttgattattgataatgttattaatcctgagctatgtaaattttgattctcaccgtatatatat  24561200  Previous    Next  AGI:  At5g60980.1    Description:  nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein. similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G25150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17019.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) Range:  from: 24560669    to: 24563495    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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