Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------ARR14(2)                                                       <---------AHL20(2) ------->TEIL                                                 >>>>>>>>>ARR2            --------->ARR14(2)                                                 <------------CBF      --------->ANAC55(2)                                  <---------ANAC58     --------->AHL20(2)<---------CCA1(2)                    <---------ANAC58            --------->ATHB12 --------->AHL20(1)              ----      <------------CBF            <---------ANAC58<---------WOX13(1)   <---------ANAC55(2) ----------     --------->ATHB12       --------->ATHB12   <---------YAB1    --------->AHL20(2)        <--------- ---->ARR11(3)      <---------ANAC58        <----------DOF2      <---------AHL20(1)     <-----------GT1 -----ARR11(3)      <---------ANAC46       <---------DAG2        <---------AHL20(2)  <---------ICU4   tcttgagtaattgggcttcgtttcgggccttgatttgcttaagccccttttgattgtttaatttgaatttattatgtatctgtttcatttttactcaaaa  24547400         xxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ALFIN1   xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   <---------REM1(1) <---------ZAT18   xxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  xxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  *TSS <---------At4g35610   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                --------->AtMYB61  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                           ------->TEIL  xxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------ALFIN1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       --------->LBD16  xxxxxxxxxxxxxxxxx>smallRNA(si3)                            --------->ANAC58  xxxxxxxxxxxxxxx>smallRNA(si3)                              --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------ALFIN1  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <-------PIF5  --------->ANAC46  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            ------->PIF5 <---------LBD16  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------LBD16--------->ANAC46  xxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxx>smallRNA(s)             <---------ICU4  xxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxx>smallRNA(le3)             --------->YAB1  xxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(se3)            <---------ICU4  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(s)           --------->YAB1  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxx>smallRNA(si3)     ------>MYB83  <---------ICU4  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------>MYB46(1)           -  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxx>smallRNA(le3)      -------->P--------->ICU4  <  xxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxx>smallRNA(s)     <---------MYB111(2)         -  xxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxx>smallRNA(si3)   <---------MYB46(2)         <- <---------ANAC46    --------->ZAT18   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------MYB111(1)    <----- ----->ALFIN1     ---------->DOF2      xxxxxxxxxxxxxxxx>smallRNA(le3)<---------ALFIN1--------->YAB1-- ----->AGL15      xxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  --------->YAB1 ------AGL15  xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx>smallRNA(si3) --------->AtMYB61 -----------   tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccacctactctaataataatcatgttata  24547500                            --------->AHL20(2)                            <---------ICU4   <---------YAB1           <---------AHL20(2) <-----------GT1        --------->AHL20(2) -------->AHL20(1)      <---------AHL20(2)                                                   <------- ---------AHL20(2)     <---------AHL20(2)                                                    -------- -------->AHL20(2)     --------->AHL20(2)                      ====================================== --------AHL20(2)      <---------AHL20(1)             <---------TOE2(3)   --------->ANAC55(2)-------- ----YAB1          <---------AHL20(2)                <-----------GT1      <---------ANAC55(2)<------- ------->AHL20(2)  --------->AHL20(2)      <---------YAB1      --------------->AGL15   --------->MYB52(2) >GT1       <---------AHL20(2)             ------>ZmHOX2a(1)   ------>ZmHOX2a(1)<-----------RAV1(1)   attttattattcattttttttttaatttaattaatacatagagtcctcatagaattaacatattcctatatttgttacttaaatgttgttcgtttctaga  24547600                                                                             <---------AHL20(2)                                                                             <---------ICU4                                                                             --------->AHL20(2)                                                                            <---------YAB1                                                                         <---------YAB1                                                                        --------->ARR11(3)                                               ---------->DOF2        <---------YAB1                                              <---------AHL20(2)    --------->YAB1     --------->ZAT6                       <---------------AGL15<---------MYB52(1)   <-----------GT1              --------->AHL20(2)             --------->DOF5.7(2) --HSFB2a(2)     <---------AHL20(2)  XXXXXXXXXXXXXXXXXXXX>MIR2937--------->WOX13(1) ->HSFB2a(2)    --------->AHL20(2)  <---------ICU4            --------->TOE2(3) <-----------GT1 =========================================================MADS_MADS<---------ATHB12--------->TOE2(3) ->HSFC1(1) <---------AHL20(2)  <---------AHL20(2)           ----------->GT1--------->ICU4 --HSFC1(1)------------>CBF    --------->AHL20(2)       ---------->DOF2 <---------ARR11(3)   --------   agttttaacactattcaattttataaactgctaattaataagtgctattaaaagagttcaaagacgttaatcaagataattaataccatagttttgttcc  24547700                         <-----------RAV1(1)                                                        <                     --------->AHL20(2)                                                             <                     <---------AHL20(2)                                                             -               --------->ANAC58     --------->WOX13(1)                                         ------      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <--------     --------->AHL20(2) <---------YAB1<---------ATHB12                                    <---------AHL20(2)     <---------AHL20(2)<------------CBF   --------->MYB46(3)                        <----------DOF2xx -->ID1        --------->ANAC58   ------------>CBF    <---------AHL20(2)         <-----------GT1xxxxx   cttccatttaaataggcaaggattttattgttgttcatcaatcaactactaaacatatattttgttatactaacaaagttttttttctttattttttctc  24547800                                 --------------->AGL15 ---------ARR11(3)               <---------------AGL15                      ------>NtERF2 -----------ARR10             <-----------GT1                    ---------->DOF2 -------->ARR11(3)    ----------->GT1                         --------->At5g28300 ------>CBF      <---------AHL20(2)          --------->At4g35610--------->ARR14(2) ---GT1         --------->AHL20(2)       <-----------HVH21    --------->LBD16          <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->YAB1       --------->ANAC46       <---------ANAC46 xxxxxxxxxxxxxxxxx>smallRNA(le3) <----------DOF2            <---------LBD16--------->RAP2.6(2)<------   aatatctcagtatgtctattaaaaatgtgatttcacttttaatggtcatatgcattatagtctccgtaaatgcaaggccaccattttcgtctatttttac  24547900             <---------ANAC55(2)             --------->ANAC55(2)          <---------MYB52(1)        --------->ANAC46     <---------ARR14(2)     --------->ARR14(2)    <---------GLK1(1)                   <---------ARR14(2)    <---------CCA1(2)                   --------->ARR14(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ------>ZmHOX2a(2)                     <---------CCA1(2)  --------->At4g35610 xxxxxxxsmallRNA(se3)         --------->ARR14(2)          <---------At4g35610         --------->HSFB2a(2) -----GT1 <<<<<<<<<MYB98  --------->HSFB2a(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<---------HSFB2a(2)   tgatccatatccgttacttaatagttttccagtattttctcgtatattcaaatgttattcatctgtgatgaaatttccaatatgcgttatagaaactact  24548000                                    <-----------RAV1(1)                    ----------->GT1<---------YAB1     --------->ARR14(2)         ------>ZmHOX2a(1)     <---------ARR11(1)         <---------YAB1     <---------ARR14(2)         --------->ICU4     ------->TEIL  <---------MYB46(3)               <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <-----------GT1    <---------ARR14(1)       ---------->ID1--------->ANAC46    <---------CCA1(2)  --------->ATHB12    --------->ANAC58                                   -------   --------->LBD16 --------->MYB55(2)      --------->ANAC58            <---------ANAC58    --------->ANAC58  <---------ANAC55(2)  <---------MYB46(3)<---------AtLEC2--------->MYB52(1)                --------->ANAC46  --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ANAC58    --------->ANAC58   caatccgtatctaataggcgatgggtgattagtccttattgttgcaaggcatatttacataccagagattactgcttgccaaaaattccatacatgccac  24548100                                                                         <---------AHL20(2)                                                                         --------->AHL20(2)                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                   <---------AHL20(2)                                                                   --------->AHL20(2)<---------AHL20(2)                                                               <---------AHL20(2)    --------->AHL20(2)                                                               --------->AHL20(2)--------->AHL20(2)                                                             <---------AHL20(2)  <---------AHL20(2)                                                             --------->AHL20(2)--------->AHL20(2)                    --------->YAB1                         --------->AHL20(2)  <---------AHL20(2)                    -------->ATHB1                         <---------AHL20(2)<---------AHL20(2)                    --------->ATHB12                     --------->AHL20(2)  --------->AHL20(2)                    <---------ICU4                 --------->AHL20(2)--------->AHL20(2)                   --------->ICU4                  <---------AHL20(2)<---------AHL20(2)                   <---------ATHB12               --------->YAB1 --------->AHL20(2)--------->AHL20(2)          --------->YAB1     ---------->DOF2   <---------GLK1(2) <---------AHL20(2)<---------AHL20(2)       <----------DOF2   <XXXXXXXXXXXXXXXXXXXXMIR780.1  --------->AHL20(1) --------->AHL20(2) ---->RAV1(1)      <---------YAB1 <---------MYB46(3)    <---------AHL20(1) <---------AHL20(2)      <-   attttccttctttcataagaaatcattgtttaaaagttgttagaaaatagaattttaatatatatatatatatatatatatatatatatatataagtctt  24548200                                                       <---------ICU4                           --------------->AtSPL8      <--------ATHB1                     ================================================================================                     <---------------AGL15             --------->YAB1                              <-         --------->DAG2    <---------------AtSPL8     <---------YAB1                             <---        ---------->DOF2  <-----------RAV1(1)          <---------ATHB51     <----------DOF2 <---------     --------->YAB1  --------------->AGL15     --------->YAB1              <---------DAG2 <---------ICU4 ----------GT1--------->ATHB12                 --------->AHL20(2)        <------------------------ANAC81   ttaacaaaaataaagttgatttgctaaatgttgtactcaaaaactacaattatacaataatagcattacaacattcacttttctgtgtttcatctttatt  24548300  Previous    Next  AGI:  At5g60963.1    Description:  pre-tRNA. tRNA-Ala (anticodon: CGC) Range:  from: 24547402    to: 24547474    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g60964.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60945.1) Range:  from: 24547812    to: 24548150    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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