Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->ANAC58      ---------->DOF2    --------->ZAT2                         --------->MYB52(2) --------HVH21           <---------At4g35610               <---------TOE2(3) ---->ANAC46--------->ANAC58  --------->At4g35610     <---------MYB46(3) ---->bZIP60(2)          --------->At4g35610       <---------GLK1(2)     <---------ANAC46 --->LBD16--------->MYB52(1)  <---------At4g35610  <---------ARR14(2)  <-------GAMYB              <-- ---HSFB2a(2)          <-----------RAV1(2)         --------->ARR14(2) <-----------RAV1(1)    <------- -->HSFB2a(2)      ---------->DOF2         <---------ICU4  <---------TOE1(3)                 --------   gtcactgcaaaagaacgaaatcaaagcaggtgagcttcaaaaccagaattacagatttgttgaggtttgtttctgttgtgaaacttactcagggctgtag  24543100                                                                   --------->ANAC46                                                                   --------->ANAC58                ----------->GT1                   --------->ARR14(2)  ------->TEIL                <---------MYB46(3)                --------->MYB52(1) <---------ALFIN1               <---------TOE1(2)            --------->LBD16        --------->ANAC58               <---------TOE2(2) --------->At4g35610              --------->ANAC46            <---------ANAC46     <---------At4g35610           <---------ARR14(2)            --------->ETT(1)     <---------ZAT2   <---------ARR14(2)--------->LBD16      ------>ZmHOX2a(1)<-----------GT1     <---------ANAC58    --------->ARR14(2) ---------GT1 <------NtERF2      --------->ZAT2  <------ZmHOX2a(1)<---------LBD16      <------------- --ZAT14  <-----------HVH21 ------>MYB46(1)<---------ANAC58   <---------GLK1(1)        -------------- ->ZAT14 <-----------RAV1(1)------>MYB83  <---------LBD16     --------->GLK1(1)   <----------DOF2   <   tcactctccttctgtcggaggttataaacctactgagcttcgcatgcgggaggaacggggttcgatatcccgcacctccatcttctttactaaatcgagt  24543200    <---------AHL20(2)                                           <-----------GT1    --------->AHL20(2)     --------->AHL20(1)          <---------AHL20(2)    <---------AHL20(1)     <---------AHL20(2)         --------->AHL20(2) --AGL15                   --------->AHL20(2)      --------->AHL20(2)                <-----------RAV1(1) ->AGL15        --------->YAB1     --------->ZAT18 <---------AHL20(2)      <---------ANAC58 ---------AHL20(2)        --------->AHL20(2)      --------->AHL20(2)       <---------ANAC58      <---   ttttattttattttgcattcaaaacaaaaaaaattagtgcatagagtcttcataaaattaatgcatattactgtatttcttacttaaatgttgttcgttt  24543300                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                        <---------ICU4                                                                                       --------->ICU4                                                                                    <---------YAB1                                                                                   --------->ARR11(3)                                                                               --------->YAB1                                          --------->AHL20(2)                  <---------ATHB12                                          <---------AHL20(2)              --------->DOF5.7(2)                                         --------->AHL20(2)               <---------MYB52(1) <-------                                   ----------->GT1             --------->GLK1(2) <---------YAB1                                --------->MYB52(1)        ---------->DOF2--------->TOE2(3) --------->ZAT6                           --------->AHL20(2)            <---------AHL20(2) --------->WOX13(1)                           <---------AHL20(2)          <---------YAB1   ----------->GT1<---------YAB1 --------GT1              --------->AHL20(2)  <---------AHL20(2)   ---------->DOF2 <---------ARR11(3)   tactcttgggagtttcaactctattcaaatttataaacggctaattaataaatgtttattaaaagaatccaaagacgttaatcaagataattaatactat  24543400                             --------->ARR11(3)      <---------ATHB12                <---------AHL20(2)    <---------TOE2(3)                --------->AHL20(2)<------------CBF   --------->MYB46(3)                             <        <----------DOF2      <-----------ARR10      -------->P                                  <xxxx       <---------ANAC58      <---------ARR11(3)    --------->WOX13(1) <-----------GT1       <--------    ---------->ID1        --------->ANAC58     --------->WOX13(1)<---------AHL20(2)---------->DOF2  < --YAB1<---------ANAC58   --------->ANAC58<-------TEIL   --------->AHL20(2)  --------->ANAC46   <----   agttttgttcctttccatttaaataggcaagtatcttattgatgttcataaatcaaccattaaacatatattttgctatactaaacaaagttttctttct  24543500              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------ARR11(3)            <-----------ARR10            --------->ARR11(3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       ---------->DOF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --------->At4g35610--------->ARR14(2) ---------ANAC58                                     <-----------HVH21    --------->At5g28300      <x xxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------YAB1   --------->YAB1                  <---- --DOF2------------>CBF                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ------ ---------ANAC58                  ----------->GT1   --------->YAB1       --------->ANAC46 <----------DOF2 ------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)      <---------LBD16   <---------DAG2   ttgcttcttctcaatatctcagtatgtctactaaaaatgtgatttcatttttaatggtcatatgcatcatagtctccgtaaatgcaagaccacttttttc  24543600                         --------->TOE2(3)                         --------->TOE1(3)                       --------->SPL7                       ------->TEIL                      <---------CCA1(2)                   --------------->AtSPL8                   --------------->AtSPL3                 --------->ARR14(2)                 <---------ARR14(2)                <---------CCA1(2)          <---------RVE1(1)                <---------GLK1(1)         <---------ARR11(3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------At4g35610 xxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <------ZmHOX2a(1)            --------->At4g35610     xxxxxxx -----ANAC46 ===================================HOX2a_HOX2a   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  < ---->ID1    ------>ZmHOX2a(2)        <---------LBD16      <---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx   gtctatttttactgatccatatccgtaccttaatagtttaccaggattttttcatgtattcagatgttattcatctgtgatgaaatttccaatatgcgtt  24543700                            xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->ANAC46                  --------->ANAC55(2)                  <---------ANAC55(2)                  --------->ANAC55(1)                  --------->ANAC58                  --------->ANAC58                 <-------TEIL                 --------->SPL7                 ------->TEIL                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->SPL1(1)                <---------SPL1(1)               <---------SPL7              <---------ANAC58                         --------->ANAC46             --------------->AtSPL8                    --------->ANAC58             <---------------AtSPL3             <-----------RAV1(1)             --------------->AtSPL3         <---------YAB1            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1           --------->ARR14(2)               ------>ZmHOX2a(1)           <---------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(i)       <-----------GT1    <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(si3)             --------->ICU4      <---------AHL20(2) <---------ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->GLK1(1)   --------->ANAC58    <---------ICU4 >smallRNA(l2)<---------ANAC58     <---------GLK1(1) <---------AtLEC2     <---------ATHB12          <   atacaaactactgaatccgtacgtaataagcgatgggaaatcagtccttattgttgcaaggcatatttacataccaaagattactgcttgccaaaaattc  24543800                                                                             <---------AHL20(2)                                --------->YAB1                      <---------AHL20(1)                                --------->ATHB12                    <---------AHL20(2)                                <---------ICU4                      --------->ARR11(3)                                -------->ATHB1        ----------->GT1<---------CCA1(2)            <-----------GT1    <---------ATHB12       --------->ANAC58--------->ARR11(3)   --------->AtLEC2            <---------YAB1         --------->ANAC58<---------ARR11(3)   --------->ANAC58            --------->ICU4     --------->ANAC58  <---------ARR11(3)       <-------   --------->ANAC58   --------->YAB1      --------->DAG2       --------->AHL20(2)     --------->GLK1(2)   --------->ANAC46<----------DOF2 ----------->GT1--------->ANAC58  --------->AHL20(1)------->TEIL -- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ---------->DOF2       <---------AHL20(2)    <---------CCA1(2)   cctacatgccaaaatttccttctttcataagaaatcattgtaaaaaagttgttcgcaagtaaaattttaatatatctatatatatgtgaatcttttaaca  24543900                       <---------TOE2(3)                      ---------->DOF2                     <---------AHL20(2)                 --------->AHL20(2)                --------->AHL20(2)   --------->AHL20(2)           <---------AHL20(2)  --------->AHL20(1)           <---------AHL20(1)  <---------AHL20(1)    <------MYB46(1)           --------->AHL20(1) --------->YAB1         ----------->GT1          --------->YAB1      --------->AHL20(2)     <------MYB83          --------->AHL20(2) <---------YAB1     --------->ATHB12                 --------->YAB1    ----------->GT1  --------->AHL20(2)    --------->DAG2                       <---------YAB1   --------->DAG2<---------AHL20(2)  <---------AHL20(2)      --------------->AtSPL8       --------->YAB1  ---------->DOF2<---------YAB1<---------AHL20(2)   --------->MYB59             <---------ATHB12 ----GT1 <---------YAB1<---------TOE1(3)  ---------->DOF2    <---------------AtSPL8   --------------- ------->YAB1   <---------AHL20(2)  <---------AHL20(2)     <-----------RAV1(1)--------->YAB1   aaaataaagttattatattttaattaaagttattatattttaaataaagttgatttggtaaatgttgtactcaaaaactacaatgatacaaataatagca  24544000  Previous    Next  AGI:  At5g60940.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62445.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 24540204    to: 24543038    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g60945.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60964.1) Range:  from: 24543524    to: 24543862    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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