Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               ----------->GT1                                            --------->DAG2                                     --------->ZAT6                                --------->YAB1                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                     --------->ATHB12                              <---------ARR11(3)          <---------ATHB12                      -----         <---------TOE2(3)    --------->ARR11(3)     --------->MYB52(1)             --------->DAG2      --------->AHL20(2)  <-----------GT1  ---------->DOF2<------ZmHOX2a(2)        ---------->DOF2   agtctaaatttaagaaaaatgaacaatttcacgatcttaactctgaaaagtgaaataccgatcaaggagcaagattggaagttgaaaaagctctgagaca  24531000                               <---------YAB1                          ----------->GT1                      --------->ATHB12                      <---------ICU4                      --------->ATHB51                                                            <--                      <--------ATHB1                                                             ----                     --------->ICU4                ----------->RAV1(2)                     <------ZmHOX2a(2)                     <---------YAB1         ---------->DOF2                               --------->ARR14(2)               --------->At4g35610       --------->YAB1        ---------->DOF2            <---------ARR14(2) ----->DOF2 ---------->DOF2    --------->ICU4    <-----------GT1               <---------ATHB12 -----   aagaaacagaaccaagaagcagaataattggtgataatgggaataagaaagtaacctgtcgaagtaaaagaagatgaagaaatcaagaagacgatccata  24531100         <---------------AGL15        <-----------------AGL3     ------>ZmHOX2a(2)                                           <-----     <---------GLK1(2)           --------->ARR14(2)                                            <-----   --------->ANAC58              <---------ARR14(2)                              --------->TCP20   --------->ANAC58              <---------AGP1                      <---------YAB1           ------- --------ID1                     --------->ARR11(3)                <---------At4g35610       ------->TEIL ----->DAG2                   --------->ALFIN1                     --------->YAB1<---------ARR14(2) ----->DOF2                <---------AtMYB61             --------->AHL20(2)   --------->ALFIN1<------   aggccaagaaactcaatttggagacgatggaggtggatctggagaagaaagactccatttttaatactctgatgatcagagtggaaccagagacgaagct  24531200                                                                            <----------DOF2                                                                           <---------ANAC46                                                                           <---------AtLEC2          <---------MYB52(1)                                               <---------ANAC58       ------>ZmHOX2a(2)                                                   <---------ANAC58      <------ZmHOX2a(2)                                                <----------DOF2     <---------ARR14(2)                                               <---------ANAC58     --------->ARR14(2)                                               <---------ANAC58   <---------ZAT18     <---------ARR11(3)                                           --------->HSFB2a(1)    --------->ZAT18  --------->HSFB2a(2)                                             <------MYB83           <---------ZAT14  <---------HSFB2a(2)                  ------>MYB46(1)            <------MYB46(1)       --------->ALFIN1 ----ANAC58                   --------->YAB1                   <------ZmHOX2a(1)      --------->ALFIN1 ----ANAC58                   --------->TOE1(3)  ----------->GT1  <---------HSFC1(2)  <---------ANAC46 -->HSFC1(2)                  --------->TOE2(3) <------ZmHOX2a(1) <---------HSFB2a(1)<------ZmHOX2a(1) ---HSFC1(2)          ----------->GT1  ------>MYB83   ---------->DOF2<-------TEIL <------ZmHOX2a(1)   tgttccagatcccttagatgggtctggtttaatcttaaaccaatctcagaggagcaaaaagaagaggaaggtgctttgcttgaaggaggagtggacttat  24531300                                                                <---------ANAC58                                                                <---------ANAC58                                                               --------->STY1(2)                                                               <---------STY1(2)                      <---------HSFB2a(2)                   <---------ANAC58                      --------->HSFB2a(2)               ------>ZmHOX2a(2)                 <---------AHL20(2)                    <---------At4g35610               <---------CCA1(1)                       *TSS <---------ANAC58               <---------RVE1(1)                       --------->At4g35610                    <------NtERF2              --------->ARR11(3)                       <------ZmHOX2a(2)                    <--------              <---------GLK1(2)                       --------->ARR14(2)                    <--------              <---------ARR11(3)  --------->ANAC58    --------->ARR11(3)                   <---------LBD16      --------->At4g35610         --------->ANAC58    <---------ARR14(2)      ----------->GT1--------   agagagatagcagcaagattttttttagaacgagagaagcaatgagacatttttgggatctggctggctagtggctgttttagtaaaatttgagccggga  24531400                                                               <---------YAB1                                                               ----------->GT1                                                          --------->YAB1                    <--------      --------->WRKY38(1)    --------->ATHB12       <---------YAB1                          <--------      ----------->HVH21     <---------YAB1         --------->AHL20(1)                   <---------ANAC58  --------->ATHB12          --------->ICU4         <---------AHL20(2)              <---------ANAC58 <---------YAB1           --------->YAB1           <---------AHL20(1)              <---------ANAC58<- -ANAC46        <-----------GT1                    --------->AHL20(2)         --------->AHL20(2)  <-- -LBD16<-----------GT1   <---------ATHB12         --------->YAB1            --------->TOE2(3)     <-- ->LBD16       <-----------GT1                    --------->AHL20(2)  --------->YAB1    <---------ANAC58   acgatgatttgaccattttacccttctatcatgatttgattttgttttccgattatattagcatcatgttaataagaacattaattcttgtcttgcttct  24531500                                                          --------->GLK1(2)                                                         <---------GLK1(2)                                                        <------ZmHOX2a(1)                                                      <---------TOE1(3)                                                   <---------AHL20(2)                                                --------->AHL20(2)                                              <---------ARR11(3)       <---------AHL20(2)                     --------->ARR11(3)                            <--------     --------->ANAC55(2)      --------->CCA1(2) --------->AHL20(1)                    -------->P -ANAC58                     --------->AHL20(1) <---------AHL20(1)                    ------>MYB83 -ANAC58                    --------->AHL20(2)<---------AHL20(1)                    ------->GAMYB --------YAB1             --------->AHL20(2)  --------->AHL20(1)                   --------->MYB46(3) -------TOE1(2)  --------->HSFB2a(2)       --------->AHL20(2)         <-----------GT1 ------>MYB46(1) -------TOE2(2)  <---------HSFB2a(2) ----------->GT1  <---------TOE2(3)          <-----------GT1   tatgtttaagtaattgtttctcgataaaaaatatatgaacagaaaaaaaatattttaaggaatctgtatttttgacttcttaataaccaactctgtaagt  24531600                                                                                    <-----------GT1                                                                                 <---------ICU4                                                                                --------->ARR11(3)                                                                                --------->AHL20(1)                                                                                <---------ARR11(3)                                                                                --------->ICU4                                                                                <---------AHL20(1)                                                    <---------YAB1         --------->LBD16                     --------->YAB1               --------->YAB1          --------->HSFB2a(2)                    <---------YAB1        <---------ANAC46                <---------HSFB2a(2)        --------->YAB1 <---------YAB1  <----------DOF2                  --------->MYB52(1)          <      ------->TEIL--------->YAB1      <---------ANAC58                 <-----------GT1              =   <---------YAB1<---------ATHB12     <---------ANAC58  ------>ZmHOX2a(2)<---------LBD16          <-- -MYB52(1)       <---------YAB1---------->DOF2   --------->ICU4    <---------AHL20(2)        --------   ttgctatgaatcatagcctatgattataaacgagaaaggggcttttgtgtaattgtgatcggaagttagtttattaccggaaaatattaccgaagacgac  24531700                                                ----------->GT1                                           --------->ALFIN1                                          <-------GAMYB                                         <---------DEAR3(2)                                         <---------MYB46(3)                                        <---------DREB2C(2)                             --------->YAB1             --------->ALFIN1           <---------At1g77200                         -------->HAHB4            <-------MYC3                <---------MYB46(3)                         <---------YAB1            --------->TOE1(2)           <---------DEAR3(1)                         --------->ICU4            ------->MYC3             ----------->HVH21                          --------->AHL20(2)            <-------MYC2             <---------MYB46(3)                    <---------RVE1(1)            ------->MYC2             <-----------RAV1(1)                  <---------ARR11(3)           <---------TGA1a         --------->At4g35610              <---------ETT(2)<---------AHL20(2)        <------ZmHOX2a(1) >>>>>>>>>TAC1 <---------DEAR4(1)          --------->ETT(2)<---------ICU4 ----------DOF2 <---------PCF2     <---------At4g35610              --------->ZAT18<---------ATHB51 ====================bZIP_DOF    <---------RAP2.6(2)  --------->AHL20(1)  --------->ARR11(3) -------At4g35610    ----------->HVH21<-----------HVH21      ------>ZmHOX2a(2)  <---------AHL20(2) ->ANAC46  =======================================MYC_MYB<---------YAB1   <---------GLK1(2)     -----   agcttttagaggaacgtgggccattgacagtgttttcggctgtcggtggagagaaatatatgatcgtatgtggacagattttttaattattcatagtttg  24531800                      <---------AHL20(2)                     --------->YAB1                 <---------YAB1         <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ----------->GT1        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     ---------->DOF2             <-------GAMYB        <----------DOF2                    <-----------RAV1(1)----------->GT1        <----------DOF2       <-----------GT1              ----------->GT1----------------->AGL1     <-----------GT1<---------YAB1<---------DAG2      --------->AHL20(2)  ----------------->AG ------>GT1 <-----------RAV1(1)<-----------GT1        <---------AHL20(2)  ===========================   gataatattactttctgttgttataaaaattttaaactttttttttttttttttttttaaatggttaatttttgttgccaaaagagaaaatggttaattt  24531900  Previous    Next  AGI:  At5g60920.1    Description:  COB (COBRA). Identical to Protein COBRA precursor (COB) [Arabidopsis Thaliana] (GB:Q94KT8;GB:O81811;GB:Q8LDZ4); similar to COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT3G02210.1); similar to COBL4/IRX6 (COBRA-LIKE4) [Arabidopsis thaliana] (TAIR:AT5G15630.1); similar to COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT3G29810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62443.1); similar to unknown [Populus trichocarpa] (GB:ABK92936.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49198.1); contains InterPro domain COBRA-like (InterPro:IPR017391); contains InterPro Range:  from: 24528422    to: 24531355    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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