Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->DAG2                                                 ---------->DOF2                                             ------>ZmHOX2a(1)                                            --------->TOE2(3)                                        --------->KAN4(2)                                       --------->HSFB2a(1)            --------->ANAC58                                       --------->KAN4(1)              --------->ANAC58                    <---------ARR11(3) <---------KAN4(1)           <----------ID1               -----            --------->MYB46(3)         <---------HSFB2a(1)  <---------AHL20(2)                  -----            <---------MYB55(2)         <---------HSFC1(2)  <---------AHL20(2)                <-------          --------->ANAC58             --------->HSFC1(2)  --------->AHL20(2)   <---------GLK1(2)          --------->ANAC46            <---------KAN4(2) --------->ARR14(2)      <---------ARR14(2) --->DOF2 --------->ANAC58            <---------TOE1(2) <---------ARR14(2)      --------->ARR14(2)   gctactgaatgcaaaccaccaagagctatacatcgaatcgaatgttcctcaaaaagcggatttaaattggggacgaaaaccgaattctcttggccaaacc  24504600                                    ------>ZmHOX2a(2)                                   --------->GLK1(1)            <---------ALFIN1       <---------GLK1(1)           <---------MYB52(1)      <------ZmHOX2a(2)          <-----------HVH21       <---------ARR11(3)          <-----------TGA1        --------->ARR11(3)       ====================================HOX2a_HOX2a       ===================================HOX2a_HOX2a       ------>ZmHOX2a(1)          <---------AGP1                      --------->LBD16    ------>MYB46(1)       <---------ARR14(2)                         --------->ANAC46    ------>MYB83       <---------ALFIN1                              --------->RAP2.6(2)            < --------->HSFB2a(1)  --------->LBD16                             --------->ANAC58                  - ---->TOE1(3)   <----------DOF2   <---------ARR14(2)              --------->ANAC46                  < ---->TOE2(3)  <---------DAG2     --------->ARR14(2)              --------->ANAC58                  - --ALFIN1--------->ANAC46 --------->ARR14(2)  ----------->GT1<----------ID1   --------->GLK1(2)    <-   ctaaccttcctccgtcacctttcccccaaatccatagatctccgtctatagttaaaccagaatggaacaagccgcaagagattccaattcgaaaactgga  24504700                                                                                            ---------                                                                                            ---------                                                                                           <---------ARR11(1)                                                                                           --------->ARR14(2)                 <---------LBD16                                                           <---------ARR14(2)            --------->HSFB2a(1)                                                            ------->TEIL            --------->HSFC1(2)                                                             <---------          <---------GLK1(2)                                                               <---------CCA1(2)     <---------ANAC46                                                                     <---------GLK1(2) ---------ARR14(2)  <------ZmHOX2a(1)                                              <-------TEIL -------->ARR14(2)--------->LBD16                                                --------->ARR14(2) -----------ARR10--------->HSFB2a(2)                  ---------->DOF2            <---------ARR14(2) -------->GLK1(2)<-----------RAV1(2)      <---------WOX13(1)                   ----------->GT1 --------GLK1(2) <---------HSFB2a(2)    <------ZmHOX2a(1)    ----------->ARR10<---------ANAC46   ----   agaatctgcgtcgattcttccaggagtttgagcgagagagaaggattgatcagagcgaaagagaagattagcgactggagacggatacattcgaatctcc  24504800                  <---------At4g35610                  ----------->RAV1(2)                  <---------TGA1a                  --------->At4g35610                 ----------------------->TaNAC69(2)               --------->WRKY12             <---------ZAT2             --------->ZAT2             --------->At4g35610             <---------At4g35610          --------->DEAR3(1)         ===============================MYC_MYB         ===================MYC_MYB         <----------CDC5         --------->ATERF1(1)        ------>NtERF2        --------->ABI4(1)       <---------ATERF1(2)       --------->ATERF1(2)       --------->RAP2.3(3)            --------->ANAC46       <---------DEAR3(1)           <---------ALFIN1       --------->RRTF1(2)      <-------PIF5       --------->RAP2.6(2)     <-----------HVH21       --------->DEAR3(1)      ------->PIF5       --------->RAP2.3(2)    --------->ANAC58       --------->RRTF1(3)     <---------TGA1a      --------->DEAR4(2)      --------->ANAC46      --------->RRTF1(1)      --------->bZIP60(2)      --------->RAP2.6(1)     --------->TGA1a      --------->ATERF1(1)     --------->O2      --------->RAP2.3(1)     --------->ANAC58      --------->ERF1          <---------O2      --------->ORA47(2)     ------>NtERF2     --------->At4g35610    <---------ALFIN1     <---------At4g35610  <-----------HVH21     <---------ATERF1(1)  ------>NtERF2     --------->LBD16     --------->ANAC58                 <---------ANAC55(2)     <---------RAP2.3(1) --------->ANAC58                 <---------ANAC46     ------>NtERF2======================bZIP_bZIP         --------->ANAC55(2)    --------->ANAC46   <---------ANAC58                 --------->MYB52(1) --------->ARR14(2)    <---------ANAC58       --------->ZAT2  <---------ARR14(2)      --------->ZAT14 <---------ARR14(2) ----------->HVH21 --------->O2     ----------->HVH21              --------->REM1(2) >HSFB2a(1)------>NtERF2 --------->ANAC46     --------->At4g35610                     <---------ZAT14 >GLK1(1)<------NtERF2 <---------bZIP60(2)   --------->ARR11(3) ------>ZmHOX2a(2)    <---------ANAC46 --ARR10<---------ATERF1(1)<------NtERF2   ----------->ARR10  --------->ARR14(2) <---------ANAC58 -->ZmHOX2a(1) ----------->HVH21 --------->PCF2        ----------->TGA1          <---------ANAC58   tcgattccgccgccgagctgacctgacgcgccacgtccccacgagaagagctggagagtgacgggatcggagtcgatgtctgggcttgtgtagagaatag  24504900                               <---------ANAC58                           =======================================bZIP_DOF                        ==========================================bZIP_DOF                        <----------DOF2                      <---------At4g35610                 --------->ALFIN1                      ------>NtERF2                     <---------O2                     --------->DEAR3(1)                 <---------ANAC58                     --------->RAP2.3(2)                <---------ANAC58                    --------->RAP2.3(1)                 <---------TGA1a                   --------->LBD16                      --------->TGA1a                   <---------ATERF1(1)                  --------->O2--------->ANAC55(2)                   ------>NtERF2                        <---------ANAC46        <---------ANAC58                  --------->ANAC46           <---------ANAC46       <---------ANAC55(2)                  <---------ALFIN1     --------->LBD16 <------NtERF2--------->ANAC58                  --------->DEAR3(1)  <---------ANAC46 <-----------------------TaNAC69(2)                ------>ZmHOX2a(1)    <---------LBD16 <---------DEAR3(1)         <---------ANAC58                <---------ATERF1(1) --------->PCF5  --------->At4g35610        <------NtERF2               <---------ALFIN1<---------ANAC58<------ZmHOX2a(1)    --------->ANAC58              --------->ATERF1(1)  <---------SPL7=================bZIP_DOF    ------>NtERF2             <---------ATERF1(1) --------->ALFIN1---------->DOF2    --------->ANAC46     ------>NtERF2      <-----------RAV1(1)  <----------DOF2--------->ALFIN1----------->GT1    <---------DEAR3(1)   gtaccttggtgttggctcctccgccgcttctttgagtggtccgggtggaggagaagcggcgtgtgaaactacgtaagcggtggcttaacgctgccattgt  24505000                           -------->P                           --------->MYB52(1)                    --------->ZAT14                             <---------DEAR3(1)                    <---------ZAT14                         --------->DEAR3(2)                <---------ICU4  --------->ALFIN1   <---------ANAC58            <-------TEIL --------->ZAT14      --------->ALFIN1--------->MYB52(1)                  <--          *TSS  --------->ZAT6 <---------MYB52(1)  <---------ANAC58                       --------->YAB1    <---------At4g35610  <---------ZAT14    --------->CCA1(2)----------->HVH21       ----------->GT1   tgtttcatcggagtttcatcactacagtctaccggtgggatttaagatgtgaggcttatcgaaacgacggtgtttttttaagtaagatggaataatagct  24505100                                                                                                   --                                                       <---------YAB1                              --                     <---------ARR14(2)              <---------AHL20(2)            --------->ARR11(3)                     --------->ARR14(2)              --------->AHL20(2)            <---------ARR11(3)                  --------->YAB1                    <---------AHL20(2)       --------->YAB1--------->ANAC55(2)           <---------YAB1                       <---------AHL20(1)           ----------->GT1     <---           <---------AHL20(2)                   <---------AHL20(2)       <---------AHL20(2)--------->ANAC58           --------->AHL20(2)                   --------->AHL20(2)       <---------YAB1    --------->ANAC58 --------DOF2 <---------YAB1          <---------ARR14(2)              <---------ZAT6       --------->ANAC46   ctttggaccttatattattatcgtatttgtcaatagggcctatatgttattttatttattttagaccctctagttttaattgtaaaatctttcaagtaat  24505200                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)             <---------ANAC46                                               <---------AHL20(1)       <---------TOE2(3)                             <----------DOF2 --------->TOE2(3)      ---------->DOF2                             --------->ARR11(3) --------->TOE1(3)     --------->AHL20(2)                     --------->YAB1       --------->YAB1           <---------At5g28300     <---------AHL20(2)                    <---------YAB1       <---------YAB1        --------->ARR14(2) ------->LBD16                       --------->MYB46(3)   <----------DOF2  --------->YAB1<-----------GT1 --------->GT1 ----------->GT1     <-----------GT1<---------ARR11(3)----------->GT1   <---------ARR14(2) ------LBD16--------->ATHB12  <---------TOE2(3)<---------ICU4 --------->YAB1--------->AHL20(1)   cgggaaattaaagttgattgtaaaataagtttaagtttaacgactataataagttcttttctttttataatcgttaaatataatgccagatttactgccc  24505300               --------->AHL20(2)               <---------AHL20(2)           --------->AHL20(2)          --------->AHL20(1)                                                         --------->GLK1(2)          <---------AHL20(1)                                                         <-----------ARR10          <---------AHL20(2)                                              ----------->GT1    <---------ANAC46                 ----------->GT1                <---------HSFB2a(2)    ----------->GT1      --------------->AtSPL8          --------->At4g35610         <---------ARR11(3)  ----------->GT1        <---------------AtSPL8     ---------->DOF2 --------->HSFB2a(2)   aaaattgtgtaaaatatttaaatatgtatagtactaaattagttacaaggtgaagaaagagcagaaagttttagaagggaaactcaaaatctaacttgaa  24505400                                                                                           --------->ANAC58                                                                      <-----------GT1      --------->ANAC58           <-----------GT1      --------->ARR11(3)                   <-------TEIL         --------->DAG2   ----------->GT1              --------->AHL20(1)                 <---------GLK1(2)     ---------->DOF2  <---------TOE2(3)             <---------AHL20(1)           <---------AHL20(2)     <---------TOE2(3)  <---------TOE1(3)      <----------DOF2                    --------->AHL20(2)  <----------DOF2   atttgaggtaattttagtattctattactttgaatattttgaaatttgcataagtttcaaaatttaaaagattcacctcttgttttatggaaaaagcaag  24505500  Previous    Next  AGI:  At5g60870.1    Description:  regulator of chromosome condensation (RCC1) family protein. similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48913.1); contains InterPro domain Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091) Range:  from: 24502881    to: 24505010    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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