Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ARR14(2)                                 ------->TEIL                                 --------->ARR14(2)                              <---------MYB52(2)                      <------------ATHB5                      --------->YAB1                      -------->ATHB1--------->ANAC55(1)                      <--------ATHB1--------->ANAC46              <----------DOF2         <---------TOE1(1)                      --------->ATHB12     --------->TOE2(3)     --------->TOE2(3)        <---------TOE2(1)                      <---------ICU4--------->ANAC58      <------ZmHOX2a(1)  --------->GLK1(1)                     <---------YAB1 --------->ANAC58  --------->MYB52(1)     <---------GLK1(1)     <----------DOF2 --------->ICU4<---------LBD16 <---------ANAC55(2)      --------->ARR14(2)     <---------DAG2  <---------ATHB12    --------->ICU4  <----------ID1     <---------ARR14(2) ------->YAB1        <---------ATHB51--------->LBD16  ---------->DOF2      <------ZmHOX2a(1)   atcaaaactttatgtcaatttcaatgattgtgacgaacccgcaattcttaaaaacgtaaaggacaaacctttgatgaggatttgctcatggaacgaggta  24431900                                                                             =================HOX2a_HOX2a                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            ==================HOX2a_HOX2a                                                                            --------->HSFB2a(1)                                                                            --------->GLK1(1)                                                                           <---------ARR11(3)                                                                           <-----------ARR10                                                                           --------->ARR11(3)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                                                                           <---------ARR11(1)                                                                          <---------ARR14(1)                                                                          <---------CCA1(2)                                                                         <---------DEAR3(2)                                                                        <---------TOE1(2)                                                                      <-----------HVH21                          <-------GAMYB                              <---------O2                         <---------ANAC46                           --------->ATERF1(1)                         <---------DEAR3(1)                         <------NtERF2                        <------NtERF2                              <---------ATERF1(1)                       <---------ORA47(2)                          ------>NtERF2                      <---------RAP2.3(3)               ----------->GT1<------NtERF2          -------                      <---------DEAR3(1)               --------->DAG2<---------DEAR3(1)       <------                     --------->ATERF1(1)          --------->LBD16  <-----------HVH21          -------                  <------ZmHOX2a(1)             <---------LBD16   <---------ANAC46            -------              <------ZmHOX2a(1)                --------->MYB52(1) --------->DEAR3(1)          <------           <------ZmHOX2a(1)               --------->YAB1         <---------DEAR3(1)         <-------     ----------------->AGL1         <----------DOF2   ---------->DOF2--------->O2      <------ZmHOX2a(1)   atcggagaccagaggaggaaggagtcggcgttgatggtctttgaacaataaccggagaaagtgaaacggcgtcgtcggatcttcttggaggagaagaatc  24432000                                                   <---------DAG2                                                   <----------DOF2                                                  <---------ANAC58                                                 <------------------------ANAC81                                              <----------DOF2 -->ARR11(3)                                 <---------DAG2     <---------ANAC58 ---ARR14(2)                           --------->ANAC58<-----------GT1                      --------- -->GLK1(2)                            --------->ANAC58--------->ANAC46                     <-------- -->ARR14(2)                         ---------->DOF2  ---------->ID1       <---------YAB1  <---------ATHB12 ---ARR11(3)                       <---------MYB59<---------ANAC58     <---------CCA1(2)   --------->ICU4 --GLK1(2)               --------->AHL20(2)------>NtERF2        <---------ANAC58       <---------ATHB12   ttcaagcgttttgggaacgtagagacataaattgagacctaaagccacctttgcttttcgccatttgcttcccatttcttattgaacaaatcaatgatga  24432100                                                                                        --------->At4g35610                      <---------YAB1                --------->YAB1                      <---------At4g35610                   --------->GLK1(2)              <---------ARR14(2)           --------->CCA1(2)                   ------->TEIL                   <-----------ARR10           <---------ARR11(3)                   --------->ARR14(2)             <---------ARR11(3)          --------->ARR11(3)                   <---------ARR14(2)             --------->ARR14(2)          <---------ARR14(2)        <XXXXXXXXXXXXXXXXXXXXMIR403               --------->GLK1(2)           --------->ARR14(2)        <----------DOF2                          <---------ARR14(1)         ----------->ARR10 >YAB1 <---------ANAC58                 <---------ANAC46       <---------CCA1(2) <---------YAB1 -ICU4 <---------ANAC58        <---------YAB1    <---------GLK1(2)       <---------ANAC46  ----------   aatttgatggctttgtttgtgaatctgataactatttttgttttgtggagagaatcttaagcttcttatcttcttgtgtagatatgtttgagctaaagaa  24432200                                                    <------ZmHOX2a(1)                       ---------                                          --------->LBD16                      <---------MYB46(3)                <-----------RAV1(1)       --------->ZAT14                     --------->ALFIN1<------                --------->ALFIN1          <---------ZAT14                     <---------DEAR3(1)             ------->TEIL               <---------ZAT14                       <---------AtMYB61<-----          <---------YAB1                <---------LBD16                    <---------DEAR3(1) *TSS >DOF2   <---------TOE2(3)              --------->ZAT14        <------ZmHOX2a(1)           <---------   gagattgggttaatgaatgtgttgcaaattgcaaagtttctctgcgcagagagaggaagagagaaggagagagagagacggtggtgaagtttttgacctt  24432300                         <------MYB46(1)                         <------MYB83             --------->TOE1(2)                 ----------->GT1           <---------YAB1    <---------TOE2(3)    ----------->GT1 <---------ICU4 ->ID1         <---------ANAC46          --------->YAB1           ----------->GT1 ---DAG2     <---------ZAT14            --------->ICU4          ---------->DOF2           <----------DOF2 -----DOF2  ----------->HVH21        <---------AHL20(2)     <-----------GT1     <----------DOF2 --GT1<------ZmHOX2a(1) --------->MYB59 <---------ATHB12<-----------TBP     <-----------GT1   tttttttaggatgagtgaagggtaatttggtaaatgtgtttaatcatgaaaacttgggatttataccaaagttaaatttgacctttgattttctttggtt  24432400                                                                                    --------------->AGL15                                                                           --------------->AtSPL8----                                                              --------->TOE1(3)     <---------------AGL15                   <-----------HVH21              <---------ICU4    <---------AHL20(2)          <----                <---------WOX13(1)   <----------DOF2<---------YAB1  --------->AHL20(2)     <------MYB83              --------->ATHB12       <---------DAG2<---------AHL20(1)  --------->ZAT6      <------MYB46(1)             <---------YAB1       <-----------GT1<---------YAB1     <---------ICU4 <-----------------AGL2             <---------AHL20(2)<----------DOF2   --------->ICU4------>ZmHOX2a(1)   <-----------------AG        <----------DOF2 --------->TOE1(2) <-----------GT1     --------->TOE2(3)    ==================   tttgagtttccttttttaattggtcacatacgacttttactttttttcttcattatttttgtttccttaattaatactaagtacttctcaatttggtttt  24432500                                      --------->ANAC58                                <---------AHL20(2)            <----------DOF2 --------->YAB1            <---------DAG2  --------->AHL20(2)         --------->DEAR3(1) <---------AHL20(2)<---------MYB52(1)<---------AHL20(2)      --------->ANAC58     --------->ICU4 ------>NtERF2 --------->AHL20(2)      --------->ANAC58   --------->YAB1  <---------ALFIN1   --------->ATHB12                       <-      --------->ANAC46----------->GT1 --------->ANAC46  <---------AHL20(2)                         -- ----------->ARR10   --------->ZAT6   --------->ANAC58 --------->ICU4             <---------ICU4  <-- ----->ATHB12    <----------DOF2--------->AHL20(2)----------->GT1              --------->YAB1<------- -----YAB1------>NtERF2--------->At5g28300<-----------------AG --------->AHL20(2) <-----------GT1 --- ===========================================================MADS_MADS--------->ARR11(3)      --------   gatttgatacgccgctttactttacagtaattatataaatacgacaccgttttggtaataaatgatttaatggtcttgacataataactatagtttccaa  24432600    <---------TGA2(1)    --------->bZIP60(1)    --------->TGA2(1)    <---------bZIP60(1)                                       --------------->AtSPL8    ------------- <---------YAB1                                               <---------------AtSPL8    ============= --------ICU4                                          <----------DOF2                  <------------ ------->YAB1              --------->MYB52(1)       <---------AHL20(2)                 -------------- -------ATHB51            ----------->HVH21         <-----------GT1                <---------ANAC58 ----------AGL1          <---------MYB59        --------->AHL20(2)                 <---------ANAC58 ------>ICU4         <---------AHL20(2)         --------->ATHB51            <---------AHL20(2) --------->AGL1<-----------GT1------->GAMYB     <---------AHL20(2)     <---------AHL20(2)        ----   attatgacatcatattttgacaatttatctaaccgagaattcatagagaattatttacttttattttgtacattttatattttttgtttgccatcttaag  24432700                 --------->ANAC58                                   ---------->DOF2        ------>ZmHOX2a(1)                                    <---------AHL20(2)       <---------MYB59                                       --------->AHL20(2)   <---------GLK1(1)                                       <---------------AGL15   --------->GLK1(1)   <---------ICU4                      <----------DOF2  --------->ARR14(2)  --------->ICU4                       --------------->AGL15 <------ZmHOX2a(1)    <---------ATHB12                    =========================================== -->AGL15        --------->ANAC58                         <-----------------AGL3   --------->YAB1 ===========================================================================MADS_MADS         <------ ---AGL15        --------->ANAC46          <---------At4g35610   --------->YAB1   <---------YAB1   <- --->AGL1<---------ICU4--------->YAB1     ------->TEIL    ----------------->AGL2 --------->AHL20(2)<- ------>DOF2    <---------LBD16         <-------TEIL      --------->TOE2(3) <---------MYB59   <------   aaaggatttcctaatttctacgcaataatctcattccatggatgcatctaatatttgtttcctttaattagaaagttgcctaatattatagtaaatgctt  24432800  Previous    Next  AGI:  At5g60710.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G54780.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G38970.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70517.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61381.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21866.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Zin Range:  from: 24427944    to: 24432294    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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