Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ------>ZmHOX2a(1)               ------->GAMYB                                       --------->TOE2(3)              ------>MYB46(1)                                    --------->ARR11(3)                ------>MYB83                                    --------->ARR14(2)               --------->MYB52(1)                                    <---------ARR11(3)               ----------->RAV1(1)                                    <---------ARR14(2)              --------->AtMYB61                   <---------MYB52(1) ------>ZmHOX2a(2)             ------->GAMYB                 <---------ZAT6     <---------ARR14(3)             <---------MYB55(2)              <---------ALFIN1 ==============HOX2a_HOX2a           --------->MYB46(3)            >>>>>>>>>>>>>>>>>LFY    --------->ARR14(3)             <---------MYB52(2)             <--           <-----------GT1     =============HOX2a_HOX2a           --------->ANAC58               ----         <-----------HVH21     --------->LBD16    <-----------GT1 --------->ANAC46         --------->ARR11(3)    <---------YAB1--------->At5g28300<------ZmHOX2a(2)            --------->ANAC58         <---------ARR11(3) -----ZmHOX2a(1) ----------->GT1  ----------->ARR10            <---------ZAT18         ------>ZmHOX2a(1) ----MYB52(1)--------->MYB46(3)------>ZmHOX2a(1)<----------DOF2--------->ZAT14     <---------ARR11(3)   aggaatatcaatgtcaccactgttaatttcttcctgaagatccttagggtctttaccatcaacagtgcaaccaacagagacacaagttcctaaaatctcc  24398400                                            --------->TOE2(3)                                           <---------YAB1                               --------->HSFB2a(2)                               <---------HSFB2a(2)                              ------>ZmHOX2a(2)                             --------->CCA1(2)                             <------ZmHOX2a(2)                  ==================HOX2a_HOX2a                  ------>ZmHOX2a(1) --------->ANAC58       --------->YAB1                  ===================HOX2a_HOX2a          <---------ATHB12          <---------ATHB12  --------->ARR11(3)          --------->WOX13(1)  <-----------RAV1(1)         --------->ANAC58   <---------AGP1<---------ARR11(3) --------->bZIP60(1)    --------->ICU4         --------->ANAC46   --------->AGP1--------->ARR11(3) <---------bZIP60(1)    <---------MYB52(1)         --------->ANAC58   <---------ARR11(3)    --------->WOX13(1)   --------->ANAC58 -------ZAT14    --------->TOE1(3)  --------->ANAC58 --------->YAB1    --------->ANAC46 -->ZmHOX2a(1)   --------->TOE2(3)<------ZmHOX2a(1)  --------->TOE2(3) --------->ANAC58<---------YAB1   ttcactgttccactcaattccttagcgatagatctaggacgcattatcttagcaatctcaatcacatcatcaaacgaaatgttgccattatgtttgatgt  24398500                                                                   <---------ALFIN1                                                                  --------->MYB46(3)                                                         <---------ANAC46                                                        <---------LBD16                                                        <---------At4g35610                        <-                                                        ------>NtERF2                   <---------ARR14(2)                                                      <---------DEAR3(1)         <---------ANAC58 <--                                                     <---------At4g35610         <---------ANAC58<---              <---------CCA1(2)                      --------->At4g35610    --------->TOE2(3)  ------            <---------CCA1(2)                  ----------->ARR10 >>>>>>>>>>>>>>>>>LFY   <---------GLK1(2)            ------>ZmHOX2a(1)           --------->YAB1--------->ATERF1(1)   --------->TOE1(3)<-------    <----------DOF2                  <----------DOF2--------->DEAR3(1)  ----------->HVH21--------->GLK1(2)   tcttcactttcttcctatctctctctggctccttgagggctttgatgactagagccgctgcggatggaaccactgtgaccttagcttgacgattctgtac  24398600                                                                                                 <---                                                                                                -----                                                                             <------NtERF2     <-----                                                                            ------>NtERF2     -------                                                                         <---------ANAC58     <------                                                                         <---------ANAC58     -------  --------->At4g35610                                                 <----------DOF2         <------  <---------At4g35610                                             ------>ZmHOX2a(2)     <---------ZAT14 --------MYB52(1)       <----------DOF2                          <------ZmHOX2a(2)      --------->WRKY38(1) -------SPL7         --------->ARR11(3)                         <---------ARR11(3)      --------->ZAT18 ------ANAC46        <---------ARR11(3)      <----------DOF2    --------->ARR11(3)      --------->WRKY12 ->TEIL   <-----------HVH21          <---------At4g35610        --------->ARR14(2)      --------->ZAT14 --ZAT14  --------->At5g28300    <----------DOF2                <---------ARR14(2)     --------->ALFIN1   cgtaagcttcacggtgactcgaagacctttccattctttcgctgtctctttggcgatgtcttctccgatcttctttggtgccagaccgagtggaccgatc  24398700                                                                                     <------NtERF2                                    <---------MYB52(1)                              --------->RAP2.6(2)                                   --------->LBD16                                  ------>NtERF2                                   --------->At4g35610                             <---------ATERF1(2)                               --------->DEAR3(1)                                  --------->ATERF1(2)                       ------>NtERF2<-----------HVH21                             <---------LBD16         <---------ZAT14    <---------ALFIN1           <---------DEAR3(1)        <---------RAP2.3(1)         --------->ZAT14  --------->AtMYB61         --------->O2                <---------DEAR3(1) -------DOF2          ----------->HVH21       <---------ANAC46                  <---------RAP2.6(2) ->ZmHOX2a(2)         --------->DEAR3(1)     --------->SPL7              ----------------->AGL3 -ZmHOX2a(2)          <---------ETT(1)  <---------ANAC46                <------ZmHOX2a(2) -->ARR14(2)      --------->ZAT2   <---------At4g35610 --------->DEAR3(1)------>ZmHOX2a(2) ---ARR11(3)      --------->At4g35610--------->WRKY38(1)               <---------ARR14(2) -->ARR11(3)      <---------At4g35610----------->HVH21 <---------ETT(2)--------->ARR14(2)        <--- ---ARR14(2)      <---------ZAT2 <---------LBD16    <---------O2       ------->TEIL<---------DEAR3(1)   tttggagcgagtgaagacgctgctccgacctcacctccggtgactcggacgtagacgtcgacgatttgagatggatccaatttcggcggcattttctctg  24398800                                                   <---------ANAC58                                                   <---------ANAC46                                                   <---------ANAC58                      <---------LBD16                                    <---------ANAC46                                    ----------->RAV1(2)                                    <---------ANAC58                              ------->TEIL <-----                                    <---------ANAC58                           --------->ANAC55(2)                         <----------DOF2<----------DOF2           --------->AHL20(2)  <---------At5g28300                       <---------At4g35610  --------->YAB1        <---------AHL20(2) <-----------GT1                       <---------ZAT2 ---------->ID1          ----------->GT1<-----------GT1<-------- ------GLK1(2)     *TSS--------->At4g35610<-----------TBP    <---------TOE2(3) <---------ANAC55(2)   attcttctctcactcactcactctcagcttctagggtttcgtctttttataatgcgtttaactagggtttaaatgcaaattacgaatttaccctggaccg  24398900                                                                        <---------ANAC46                          --------->ICU4                                --------->HSFB2a(2)                        --------->AHL20(2)               <---------WOX13(1)                       <---------AHL20(2)                <--------P     <---------HSFB2a(2)                       --------->AHL20(2)       --------->ANAC58       <---------LBD16              < --------->YAB1    --------->AHL20(2)           --------->ANAC46     <---------ARR14(2)       <------ ----MYB59     ---------->DOF2                  --------->ANAC58<-----------GT1     <-----------GT1-- -WRKY18(1)  <---------AHL20(2)        <----------ID1  <---------MYB46(3)--------->LBD16 <---------MYB52(1)   aaatcaaaaccatatttaaaagaaaataatttttagcaaataagacaaacacacaattggttgatttcgccattccggatgttttgtttcggttcgcttc  24399000                                                       --------->ANAC58                                                       --------->ANAC58                                              --------->AHL20(1)               <---------ZAT2                 <---------AHL20(2)                   <---------ZAT18        --------->ALFIN1                      <---------AHL20(1)           <---------TOE1(3) ---------WRKY18(1)                  ----------->GT1 ---------->DOF2       <---------TOE2(3) ----DOF2    <---------ZAT14 --------->YAB1   --------->AHL20(2)          ---------->DOF2 --------->HVH21             ----------->GT1 --------->AHL20(2)          <---------AHL20(2) <--------   aatgaccgaggtgtctgtgctggtttttcaagggtaatttgggaaaattttatttgaaagcaaatgggtttggatttaaagttaatggactcttgtgtta  24399100                              ---------->DOF2                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                          --------->CCA1(2)                         --------->ARR11(3)                         <---------ARR14(2)                         <---------ARR11(3)                         --------->ARR14(2)                         <---------AGP1                                                  --------->HSFB2a(2)                         --------->AGP1                                           ---------->ID1<----    <---------YAB1     ----------->ARR10      ------>NtERF2           <----------DOF2    <---------HSFB2a(2) -ZAT6            <------NtERF2             <---------RAP2.6(2)  <-----------GT1<-----------RAV1(1)   tatgttttgataaatagggcctcataagatctgaaagcccaagttttcggcctatgcgttgaaaatttcactctttagtattttgttgtttctcgaggct  24399200                   <---------WOX13(1)             --------->CCA1(2)            <---------ARR11(3)            --------->ARR11(1)            --------->ARR14(2)            <---------ARR14(2)                                  <----------ID1          ----------->ARR10             --------->YAB1        --------->ANAC58     <---------TOE2(3)            <---------------AGL15       --------->ANAC58     <---------TOE1(2)   <---------AHL20(2)                  --------->DAG2     --------->MYB59 --------->ATHB12--------->YAB1         ---------->DOF2     <---------TOE2(2)  --------->AHL20(2)       ----------->RAV1(1) ------DOF2 --------->ARR11(3)    --------------->AGL15 <---------HSFB2a(2)   tttttcttaggtaagatatggattgatttaatattccattaatgagaaatgccacagtctcgaaaagccacaagttagaaaacgtttagaagttcaaaga  24399300  Previous    Next  AGI:  At5g60670.1    Description:  60S ribosomal protein L12 (RPL12C). Identical to 60S ribosomal protein L12-3 (RPL12C) [Arabidopsis Thaliana] (GB:Q9FF52); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66258.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) Range:  from: 24398136    to: 24398819    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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