Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->AHL20(2)                                                                                    --------->YAB1                                                                                   <---------AHL20(2)                                                                             ----------->GT1                                            --------->YAB1                  <-------TEIL                                 ---------->DOF2                       --------->AHL20(2)            ------>MYB46(1)   --------->TOE2(3)                        <---------AHL20(2)          <---------MYB59     --------->TOE1(3)          <-----------GT1<---------YAB1   --------->MYB52(1)         ----------->GT1       ----------->GT1   --------->AHL20(2) ------YAB1 ------>MYB83    ------->TEIL ----------->RAV1(1)         XXXXXXXXXXXXXXXXXXXX>MIR1888   <   tgataaaacggaccaaactaattcaaactgaaccgtaaagaaacaacaatagtatggtatcaccatctcaaattaaaattcgtaaataatatttgtttgt  24393800                                --------->HSFB2a(1)                     <---------TGA1a                     <---------ANAC58                     --------->TGA1a                                   <-------TEIL                     <---------bZIP60(2)                               --------->ZAT14                     <---------O2                                   <---------MYB46(3)                     --------->bZIP60(1)                            <---------DEAR3(2)                     <---------ANAC46                              <---------DEAR3(1)                     <---------bZIP60(1)                         --------->LBD16                     <---------ANAC55(2)                        <---------ATERF1(2)                --                     --------->ANAC55(2)                      --------->MYB52(1)             --------                     =========================================MYC_MYB<---------SPL7         <--------                     <---------ANAC58                        --------->CCA1(2)              ---------                     <---------ANAC55(1)                --------->LBD16--------->SPL7      <------ZmHOX2a(2)                   <-----------GT1                    <---------LBD16<------NtERF2         <---------YAB1          --------->GLK1(1)     <---------HSFB2a(1)  -------->P--------->DEAR3(2)         <---------ARR11(3)          <---------GLK1(1)    <---------TOE1(2)     --------->MYB52(1)<---------ZAT14    --------->ARR11(3)     <---------LBD16 --------->O2             --------->YAB1<---------ARR14(2)           --------->YAB1 ---------AHL20(2) <-------------DYT1     <---------AHL20(2)--------->ARR14(2)        ---------->DOF2   ttttatttgtggaaatctatgtaacgtgactcgaacgtttgtatataaacatacttaccggagataccggcggtacagtaaacgagaacaaagatcattc  24393900                                        --------->ANAC58                                        --------->ANAC58                                      <---------ALFIN1                                    ----------->RAV1(1)                                   <------NtERF2                                  ------>NtERF2                                  <---------ATERF1(1)                                  --------->ABI4(1)                                 <---------ATERF1(2)                                 --------->DEAR3(1)                                 --------->ANAC46                                 --------->ATERF1(2)                                 --------->RAP2.3(3)                                 --------->RAP2.3(2)                                --------->ERF1                                --------->RRTF1(1)     --------->MYB55(2)                                --------->RAP2.3(1)    <---------ATERF1(1)                                --------->ORA47(2)     <---------DEAR3(2)                               ------>NtERF2           <---------MYB46(3)                               <---------ATERF1(1)    <---------DEAR3(1)                               <---------RAP2.3(1)   <---------MYB52(1)                              --------->ANAC58      ------------>AtMYB77                      <---------KAN4(1) --------->ANAC46<-------GAMYB                 --------->ANAC58--------->RRTF1(3) --------->LBD16          --------->ANAC55(1) --------->ANAC58    <---------LBD16  ---------->DOF2--------->ANAC46--------->RAP2.6(2)------>NtERF2 ------->ANAC46  --------->ANAC58--------->RRTF1(2)<---------DEAR3(1)                         <------ZmHOX2a(1) ->KAN4(2)--------->ANAC58    --------->ANAC46   ------>ZmHOX2a(1)                           <------- -KAN4(1) --------->ANAC46   --------->SPL7  --------->ANAC46                  <---------At4g35610 >KAN4(1) --------->ANAC58  ------>ZmHOX2a(1)<---------ALFIN1            <----------DOF2     --------   caccgaaagcccacgcaatacccaatattcctacgccgccacaatccactcctccggcggttgcatcggtttgagctttgtagccgattacagtcaggat  24394000                                                                                                    <                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           <---------LBD16                                  <---------At4g35610                    ============================                                  --------->At4g35610   ------>NtERF2    ------>ZmHOX2a(1)<---------ANAC46  <---------ANAC46<-----------RAV1(1) ----------->HVH21--------->RAP2.6(2)      ----------->GT1------ --YAB1           --------->ALFIN1<---------ZAT2   --------->DAG2   <---------At4g35610   --------->ALFIN1 ->ICU4  <------ZmHOX2a(1)        --------->ZAT2  ---------->DOF2------>ZmHOX2a(1)     <-----------RAV1(1)   tgagacgtagaggaacagaagtgttgctacaaactcagctatgaccgctctataaagcggccatttcctaagctcctccatgtcgaaaaatggtgcggga  24394100                               <---------ALFIN1                              <---------ZAT18                              <---------WRKY38(1)                              --------->ZAT18                             --------->PCF5                           <---------MYB46(3)                          --------->ALFIN1                          <---------AtMYB61                       <---------DEAR3(1)                       <---------ATERF1(2)                       --------->ATERF1(2)                      --------->ATERF1(1)    ------>ZmHOX2a(2) <------NtERF2   <------ZmHOX2a(2) --------->ABI4(1)  <---------ARR14(2) ------>NtERF2  --------->ARR14(2)<---------DEAR3(1) --------->ATERF1(1)--------->RAP2.3(2) <------NtERF2      --------->DEAR3(1) ---------ATERF1(1) --------->ATERF1(2) ------>ATERF1(1)   <---------ATERF1(2) ----NtERF2         --------->RAP2.3(3) ------ATERF1(1)   --------->ATERF1(1) ---->ALFIN1       --------->DEAR4(2) -----DEAR3(1)     --------->ERF1 -ANAC58           --------->RAP2.3(1) -ANAC58          <---------ATERF1(1) -ANAC46--------->REM1(2)<---------MYB52(1)                                      --------->CCA1(2) =========HOX2a_HOX2a<---------ATERF1(1)             <----------DOF2      <---------YAB1         <--- --->ATERF1(1)   --------->ANAC46      <-----------HVH21             --------->YAB1         <--------   ggcggatccttgtagtctctcgccgccggtggtccactctcgttcacatccaagtcttttgccatggccaaagatgatgagagagatgagttttaatgtt  24394200                                                            --------------->AtSPL3                                                            <---------------AtSPL8                                                       <------MYB46(1)                                                       <------MYB83                                                       <---------ANAC46                                      --------->AHL20(2)    --------------->AtSPL8                                      <-----------TBP <---------AtMYB61    <---------ARR14(2)      <---------ANAC58          --------->MYB111(1)    --------->ARR14(2)      <---------ANAC46          --------->MYB46(2)                    <--------P    <---------GLK1(2)       <---------ANAC58     <---------TOE2(3)                    <-------TEIL ------MYB46(3)*TSS   --------->MYB52(2)      --------->CCA1(2) <-------TEIL  ----------->GT1 -TOE2(3)    <---------AHL20(2)     <-----------TBP   --------->MYB59     ------------>CBF  <--------   tgttcagatttgtatatttttggtttgtttgtgtgtgcatatatatagatagaggtttggtataagtacattataagacaatgtaatatacatggttgat  24394300                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  <--                      --------->AHL20(2)                             ------->TEIL                 <--                      <---------AHL20(2)    <---------ICU4        <---------HSFB2a(2)           -----                     <---------AHL20(2)     --------->YAB1        --------->HSFB2a(2)           <----               <---------WOX13(1)           -------->HAHB4 <------ZmHOX2a(2)                  <------              <------------CBF             --------->ICU4 --------->ARR11(3)                 <-------            <---------AHL20(2)           <---------ICU4   --------->ARR14(2)                 <-------           <---------MYB52(1)            --------->YAB1   <---------ARR14(2)                ------>NtERF2          --------->At5g28300           --------->AHL20(2)<---------ARR11(3)             --------->At4g35610         ----------->GT1     <---------AHL20(2)           <---------AGP1                --------->ALFIN1     --------->ZAT18 <---------AHL20(1) <---------AHL20(2)--------->AGP1              <---------ZAT2<     --------->ETT(2)--------->AHL20(2) <---------ATHB51  <-----------ARR10           --------->ZAT2-     <---------ETT(2)--------->AHL20(1) --------->ICU4   <---------CCA1(2)            <---------At4g35610 -WOX13(1)<-------GAMYB     <---------AHL20(2)<---------YAB1------>ZmHOX2a(2)         --------->At4g35610   aactatgtggacagttaattgaatttattttttattttggaaataattatgaaggaatcagatctattctggacctgaaaatcaaatgagctggtgcctg  24394400       <---------YAB1     --------->YAB1 ------MYB46(1) ------->MYB55(2) --------MYB46(3) -------ANAC46 -------MYB55(1) ------P                                  <---------MYB46(3) ---->ZAT2                                <------MYB83 -----ZAT2                                <------MYB46(1) ---ANAC46                       <---------AHL20(2) --ANAC58                       --------->YAB1 --ANAC58                      <---------YAB1         <---------TOE2(3) ------MYB83      --------->YAB1--------->AHL20(2)  <---------AHL20(2) ---------->GT1   --------->TOE2(3)   <-----------RAV1(1)   <---------YAB1                        ---   gtgggtattatgagaaacaatctcaatttcgctattatatatgttggtttgcatataatgttttgatttcttagagttttgtttttggttatctatattc  24394500                            <------MYB83                                                            <                            <------MYB46(1)                                                      ----                            <---------ANAC46                                               --------->TOE2(3)                       <-----------RAV1(1)           <---------ZAT14                       --------->TOE1(3)                      --------->ARR11(3)             --------->REM1(2)      ----------->HVH21    ----         --------------->AGL15                       --------->ZAT14      <---------AtLEC2-----------         ============================================================================================   <----------DOF2  ------->TEIL                  <---------ANAC46      <---------YAB1    ----------- ------>DOF5.7(2)<---------YAB1       <---------YAB1--------->ALFIN1 <---------AHL20(2)  <---------ARR11(3)   gtttacttttacccaaaatatgaatatgttgggtttagttttcattccgctcgagtgtagggatgagtcattttatgcatgacaatttgaataccttaat  24394600                                                                   <---------ZAT18                                                                <---------ANAC58 ---------AHL20(2)                                      <---------YAB1 ----->YAB1                                           <---------ICU4 ------->GT1                ----------->GT1           --------->YAB1 ------>AGL1    <----------DOF2 <---------AHL20(2)   --------->ICU4--------->ZAT18 =======MADS_MADS   <---------YAB1        --------->GLK1(2)<---------ANAC46  --------->ZAT6<-------TEIL ------>AG  --------->KAN4(2)  --------->AHL20(2) <-------TEIL  <---------ANAC58    ----------->GT1<-   agtaaatttaagtatattctttttgataaaagattaaatattagaatccaagtccattatgacttagagtgcgatatatacactagtcgtaaattcattt  24394700  Previous    Next  AGI:  At5g60660.1    Description:  PIP2;4/PIP2F (plasma membrane intrinsic protein 2;4); water channel. Identical to Probable aquaporin PIP2-4 (PIP2-4) [Arabidopsis Thaliana] (GB:Q9FF53;GB:Q0WQH7); similar to PIP2B (plasma membrane intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT2G37170.1); similar to MipC [Mesembryanthemum crystallinum] (GB:AAB18227.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 24392683    to: 24394215    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version