Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------AtMYB61          <----------DOF2                                     <---------ZAT14         <---------ANAC58                       <---------YAB1<---------ZAT18         <---------ANAC58                     --------->CCA1(2)    --------->ARR14(2)                       --------->ARR11(3)    <---------ARR14(2)                       <---------ARR11(3)      <---------HSFB2a(2) <---------TOE1(3)                         ----------->ARR10  --------->ZAT18           <---------ANAC46 <---------TOE2(3)                         <---------TOE2(3)  --------->ZAT14      <---------ZAT6   tttgaggttttgctttggttcttactaaatttttgatattgggttaagatatgtttgtttttagtgcaatacgagaagattgttagtgttgagggggtat  24375800                                                                                            <--------                                                                                            ---------                                                                      <-----------GT1      <---------                              ------->MYC2                         <---------ICU4          <---------                              <-------MYC2                        --------->ICU4           <---------                              ------->MYC3                   <---------ANAC58              <---------                              <-------MYC3                   ----------->GT1          <---------ICU4                            ------->TEIL                     --------->ANAC55(2)      --------->ATHB12                         --------->ANAC58                    <---------ANAC58         --------->ATHB51          ------>MYB83<---------SPL7                         <---------ANAC55(2)     <---------YAB1          ------>MYB46(1)--------->ANAC58                    <---------ANAC46     <---------YAB1   gctaatgctacctcccattcccatggtacgcatgtgtaatttgaagaaacttggtggaccatttcgtaatttttacttaagtttcttattattgctccat  24375900          <----------DOF2     <---------AHL20(2)       <---------AHL20(2)     --------->AHL20(2)    --------->AHL20(2) -------AGL15              <---------AHL20(2) ------>AGL15             --------->AHL20(2)                ------>ZmHOX2a(1)                       < --------AGL2            <---------YAB1                  <-----------GT1                       <----- --------AGL3        --------->TOE2(3)         <---------ZAT6                              <---------GLK1(2) --------AGL1        --------->YAB1        <---------YAB1---------->ID1              <-----------GT1- --------AG   ---------->ID1  --------->AHL20(2)        <-----------GT1             <---------CCA1(2)   ttggaaattaaactttgttgtaatcttattaaaaaattatcaaatattagtggaaatttttcctatttttaagaacaatatttgttgtatccatattctt  24376000                                        <---------AHL20(2)                                       <---------AHL20(2)                 <----------ID1                                       --------->AHL20(2)              ---------->DOF2                                --------->GLK1(2)           ---------->DOF2    ---------->DOF2             <---------ARR11(3)         <---------WRKY45<------ZmHOX2a(1) ---------------AGL15           --------->ARR11(3)         <---------WRKY12----------->GT1 -----DOF2                      <-----------ARR10          <---------WRKY38(1)        <------ZmHOX2a(1) -------------->AGL15       <------ZmHOX2a(1)            <-----------HVH21----------->GT1   ttcttataaaggtgtcaatttttcaatagaggaaaatctcattaatttttgtatataggggtcaaagttgaagaaaaggataaatagaggacctcaaaat  24376100                   <----------DOF2                 <---------ZAT18                 <------------------------ANAC81                 --------->ZAT14                 <---------ZAT14               --------->LBD16              <---------ANAC58              <---------ANAC58           --------->ARR14(2)           <---------ARR14(2)           ------->TEIL                                               <------MYB46(1)          <---------CCA1(2)            <---------At4g35610            <------MYB83        --------->ANAC58  --------->AHL20(2)                         <---------MYB46(3)        --------->O2      <---------AHL20(2)                         <---------AtMYB61      <--------        --------->ANAC46 --------->AHL20(2)                         <--------P              *TSS        --------->ANAC55(2)            --------->At4g35610         <---------MYB52(1)     -----------        --------->ANAC58 <---------AHL20(2)              ----------->TBP         <---------MYB52(1)        --------->ANAC55(1)  <-----------GT1             <---------YAB1        <---------MYB46(3)   ttcattttccacgtatccgtgctctaattttattccacttctgctaaaacatttggactataaatgtctggttggtcttggctgtttgtttgcaacactt  24376200                                    <---------At4g35610                                    <---------ZAT2                                ------>MYB46(1)                           <-----------GT1                        <----------DOF2 --------->ATHB12                                         ----                     --------->GLK1(2) <-------TEIL                                              <---                ------>ZmHOX2a(1)   --------->At4g35610                                         <---- -ALFIN1        --------->LBD16 ------>MYB83              --------->WOX13(1)     --------->ZAT6------ >RAV1(1)     ----------->RAV1(2)   --------->ZAT2     --------->TOE2(3)        --------->MYB46(3)   gtgctaaaacgttttatcctgagtttctttcaccatccagcttcatttgtgaaaaatcgtcaatccctctcaaactcttctcaccactaatttcttcctc  24376300   --------->KAN4(2)  <---------KAN4(1)  --------->KAN4(1)  <---------HSFB2a(1)  --------->HSFB2a(1)                                               <---------ANAC58  <---------HSFC1(2)                                                <---------ANAC58  --------->HSFC1(2)                    <---------ALFIN1       ------>ZmHOX2a(2)                ----- <---------KAN4(2)                      --------->ZAT6       <---------ARR11(3)              <------- ----->HSFB2a(2)                       --------->ZAT14       --------->ARR11(3)      <---------MYB52(1) ------HSFB2a(2)      <---------YAB1   <---------ZAT14   <---------ANAC58          <-----------RAV1(1) -----LBD16       <---------AHL20(2)<------NtERF2        <---------ANAC58   <-----------RAV1(2) ----- >ZmHOX2a(1)    <---------YAB1<---------MYB52(1)         <---------AtLEC2   ===================RAV   tggaacattctcttctctattattttgattcccttggcctcaacactggtttctcaattgcatgatcttggctcgtcttcaggtactgttgtttcatacc  24376400                                                                                      <---------LBD16                                                                                    --------->ICU4    --------->GLK1(2)                                                          ----------->GT1   <---------GLK1(2)                                                       <---------ZAT2 ---->TOE1(3)                   --------->ATHB12                           --------->ZAT2        ---- --CCA1(2)        <---------ANAC58                                         <---------At4g35610  ----- ---->TOE2(3)     <---------ANAC58                                         --------->At4g35610 <-----   ttagagaatctcaaattggttcttgggtctggtttgattagtttctgtgttatttcaagggggaacgaagacaatttagctgggtaattctgggttttgc  24376500       <--------P       <---------WOX13(1)     --------->GLK1(2)      <-------GAMYB          <---------GLK1(2)                                            --------->TOE2(3)     <---------MYB46(3)   --------->YAB1                                           --------->ZAT6    <---------TOE2(3)   --------->GLK1(2)                                     <----------DOF2    <---------YAB1<-----------TGA1                      <---------YAB1       ------>ZmHOX2a(2) ----->LBD16     <---------ANAC46                     <----------DOF2      <---------ARR11(3) ---->ANAC55(2)  <---------ANAC58              <---------GLK1(1)           --------->ARR11(3) ----LBD16       <---------ANAC58         ---------->DOF2                --------->ICU4  --------->MYB46(3)   ggaattttggttgatttttgcgtcagaatcagaatttgaagctaaaaagagttctgctttgattatccaattgccatgatctttcacagtaaccaaaatg  24376600                                                                                                    <                                                                                                    <                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                          --------->At4g35610                                                                                          --------->ZAT2                                                                                          <---------ZAT2                                                     <---------YAB1                       <---------At4g35610                                                   <----------DOF2            <---------ZAT14  ------                     --------->At4g35610       <---------MYB52(1)         ------>NtERF2  ------>NtERF2                     <---------At4g35610     ----------->GT1             <---------RAP2.6(2) <-------   gatttatgaagaatatcaaattcagctaattttgctctgtgcctatgcagttactttgattcactgagaaaaatggcgactggagtattgccagctccgg  24376700  Previous    Next  AGI:  At5g60590.1    Description:  yrdC protein-related. similar to hypothetical protein [Vitis vinifera] (GB:CAN77236.1); contains InterPro domain SUA5/yciO/yrdC, N-terminal (InterPro:IPR006070) Range:  from: 24374247    to: 24375976    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g60600.1    Description:  GcpE (CHLOROPLAST BIOGENESIS 4); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase. similar to 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis] (GB:BAF98296.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72185.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21841.1); contains InterPro domain 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178); contains InterPro domain Dihydropteroate synthase-like; (InterPro:IPR011005); contains InterPro domain 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; (InterPro:IPR004588) Range:  from: 24376192    to: 24380711    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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