Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             ------->MYC3                                                                           <---------ARR14(2)                                                                           <-------MYC3                                                                           <-------MYC2                                                                           ------->MYC2                                                                  <---------ANAC46                                                                <------MYB83 <---------LBD16 <-------                                      --------->ARR14(2)        <------MYB46(1)             <--------                              --------->ZAT14                   <---------ANAC46            <--------            --------->At4g35610  <-----------HVH21          <---------ARR14(2)       <---------ZAT14          <-----------RAV1(2)--------->ARR14(2)             --------->ARR14(2) --------->LBD16     <---------MYB46(3)      <---------ARR14(2)<---------ETT(2)<---------AtMYB61     --------->ZAT14 -->ZmHOX2a(2)          -------->P<---------MYB52(1)    <-----------------AGL2--------->ANAC46<------   ctctcggtggtaacaggtgaagttgcaaccagttctgtcagttcttctgtcaacatttgctggatttggtgtatgcatatgcggaagttcagtgatggtt  24373800                                                                                    --------->MYB46(3)                                                                                    <---------MYB55(2)                                                                                   -------->P                                                                                <------NtERF2                                                                                --------->LBD16                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                               --------->RRTF1(3)                                                                               --------->RAP2.3(2)                                                                               --------->RAP2.3(3)                                                                               --------->RAP2.6(2)                                                                               --------->DEAR3(1)                                                                               --------->RRTF1(2)                                                                               --------->ANAC46    --                                                                              --------->RRTF1(1)  ---                                               --------->At4g35610          --------->DEAR3(1)   <---                                               ----------->RAV1(2)          ------->GAMYB  --------->ARR14(2)                                               <---------At4g35610          --------->ANAC46<------ZmHOX2a(2)                                               --------->ZAT2--------->WRKY38(1)------>NtERF2    <---                             <-----------RAV1(2)             --------->WRKY45 --------->RAP2.3(1)----                             ==========================RAV <----------DOF2 --------->MYB46(3)    <--- --MYB46(3)             <---------ANAC58     <-----------RAV1(2)           <---------MYB55(2)    <--- -YAB1                  <---------ANAC58     --------->MYB46(3)            --------->DEAR3(2)------>ZmHOX2a(2) -AtMYB61   <----------ID1--------->ANAC58 ----------->RAV1(1)          --------->MYB46(3) <---------ARR14(2) -GAMYB--------->At4g35610--------->ANAC58 ================RAV      <-----------HVH21--------->AtMYB61   gagtttgtgagatggagacgaagatggcgagccagaaggctagagcaacagctgaaccatgctttgactctgtcacaaccgccgcaaccactggatccaa  24373900                                                                                  --------->ICU4                                                                                 <---------TOE2(3)                                                                            <------MYB83 ------>P                                                                   <------MYB46(1)   ------- ---->GAMYB --------->WOX13(1)                         <-----------GT1      ----------->GT1   <------ ------MYB111(1)                               <---------At4g35610         --------->MYB59   <------- ------MYB55(2)                                --------->At4g35610   --------->ZAT14         -------- ----->MYB46(3)                           --------->ZAT18            <---------ZAT18         <------- ------MYB111(2)                          <---------ZAT14            <---------ZAT14    --------->ANAC55(2) ---------MYB.PH3(2)  --------->TOE2(3)  --------->ALFIN1      <-----------GT1   <---------TOE1(3)---   caacctctctgcatcattcaaatacctcatagagagccaagaagtggacagatgattttacatttatacagtgtagtttggttaatgtttatgtaatgat  24374000    ---------->DOF2        --------->ANAC58 -->ATHB12                 --------->ANAC58 --------->KAN4(2) ---ICU4                   --------->ANAC46--------->KAN4(1) --YAB1                 ------>ZmHOX2a(2)<---------GLK1(2) ->ICU4          --------->DAG2      ---------->DOF2                                              --- --ATHB12 ---------->DOF2--------->TOE1(2) <---------KAN4(1)                                   <----- -------->GT1   ---------->DOF2 --------->ICU4   <----------DOF2  <-------TEIL           ----------->GT1   ttgtataaaagaaaaagagaaagtgatccaaggaatgcttaaagattgttccttttgtttgttttacatacacatttgtattgttgtaagtttgtaactt  24374100                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                 <---------AHL20(2)              ----                                                               --------->CCA1(2)      <---------O2---                                                              <---------ARR11(3)   ----------->HVH21                                                              --------->ARR11(3)  <---------PCF2 <---                                                        --------->YAB1            <-----------HVH21                                                        <---------AHL20(2)       <------MYB83    <---                                                        --------->AHL20(2)     --------->ALFIN1  ---- ------>ATHB12                                       ----------->GT1 <------------CBF --------->O2--- -----DOF2              --------->ICU4               --------->YAB1<---------YAB1<------MYB46(1)-----   tgatttgctcaatctctgcaaatgaaatgtttgtagcagtattggtttctctgtataataaaaagatttaaaattgaacaagtgggtcacgaggtaatca  24374200      <---------ARR14(2)      --------->ARR14(2) ---->MYC4 -----PIF5 -----MYC2 ---->PIF4 -----PIF4 ---->MYC3 -----MYC3 -----MYC4 ------ANAC58 ----->O2 ------ANAC55(2) ------O2 ------bZIP60(2) ----->TGA1a                                                                  <-----------HVH21 ---->PIF5--------->LBD16                                                 <---------DEAR3(1) ------ANAC58                                                           ------>NtERF2 ------TGA1a                                                           ----------->HVH21 ----->ANAC55(2)                                                       --------->DEAR3(1) ---->MYC2------>ZmHOX2a(1)                                        <---------HSFB2a(2) ------->OsbHLH66                              *TSS                --------->HSFB2a(2)      ------->TEIL   cgtgccaagttcctgaaaactcttcttctctgtttctgacttattaggcttaagtctttgttcttccttctcgacgacggtgtcacttgcgatgaatctc  24374300                                        --------->RRTF1(3)                                        --------->DEAR3(1)                                        --------->RAP2.3(3)                                        <---------ANAC46                                        --------->RAP2.3(2)                                       --------->DEAR4(2)                                       --------->ORA47(2)                                       --------->ATERF1(1)                                       --------->RAP2.3(1)                                      <---------ATERF1(1)                                      ------>NtERF2                                      <---------RAP2.3(1)                                     --------->RAP2.3(2)                                     <---------DEAR3(1)                                    --------->ERF1                                    --------->RRTF1(1)                                    --------->ATERF1(1)                                    --------->RAP2.6(1)                                    --------->RAP2.3(1)                                   <---------RAP2.3(1)                                   <---------ATERF1(1)                                  --------->ATERF1(2)                                  <---------ATERF1(2)                           <-----------ARR10                       <------MYB46(1)                           --------->GLK1(2)                       <------MYB83                          <---------GLK1(2)                        <---------DEAR3(2)                        --------->LBD16<------NtERF2              <---------AtMYB61                       <---------HSFB2a(2)                        --------->MYB59                       --------->HSFB2a(2)                       <--------P                       --------->ANAC46--------->RRTF1(1)     <---------TOE1(3)                       --------->LBD16--------->ABI4(2)       <---------TOE2(3)   <-----------GT1                      <---------LBD16--------->DEAR3(1)     ---------->DOF2     --------->YAB1         --------->At4g35610    --------->MYB52(1)       <---------ANAC46    <-----------GT1 --------->O2         --------->HSFB2a(2)         ------>ZmHOX2a(1)<---------MYB46(3) <---------O2   <-----------ARR10--------->DEAR3(2)  ----------->RAV1(2)    <---------AHL20(2) --------->ANAC46     <---------HSFB2a(2)------>NtERF2 ------>ZmHOX2a(1)<----------DOF2  <----------DOF2   tccacgaggctcgctgaaaaacttcccggaatcttaccggcgccgtcttctcctctcctgcgtaaaggttggttctttttaatcttactgtctttttgga  24374400                                                                                            <--------                                                                                            <--------                                                                                     <---------ARR14(2)                                             <---------GLK1(1)                       --------->ARR14(2)         <------MYB46(1)            <----------DOF2                                 <------ZmHOX2a(1)         <------MYB83            --------->ARR11(3)                               <---------TOE2(3)     --------->ATHB12            <---------ARR11(3)                        <---------WOX13(1)  <---------ANAC58              --------->GLK1(1)                        --------->ATHB12   <--------  <---------ANAC46              <---------GLK1(1)                       <---------YAB1   <----------DOF2  <---------ANAC58       ---------->DOF2<---------LBD16       --------->ATHB12 <---------REM1(1)    <   aattgcttgtttggtttggattcaattcaaagggaaatcttttctgggtttctcttcgtctgtttgatttgtctctgattgatgaaggatactttcgtgc  24374500                                         <------MYB83 --------->ARR14(2)                        <----                                         <------MYB46(1)                                        =====                                        --------->MYB59                                         ----- <---------ARR11(3)                     --------->MYB111(1)                            <-----------GT1 --------->ARR11(3)                     --------->MYB52(2)                          --------->ATHB51 -ANAC58                 <---------TOE1(2)  <-------TEIL                            --------->AHL20(2) -ANAC46           <----------DOF2      --------->MYB46(2)   --------->ANAC58       <---------ICU4 -ANAC58       <---------CCA1(2)       <---------MYB55(1)    --------->ANAC58       <---------AHL20(2) ---------CCA1(2)<---------YAB1       <---------MYB52(1) <-----------GT1           --------->ICU4 <--   tcatatctctctacctcttatctttactaggttttaagtcgttaggttcaatctcgaattcacaagctaatgagggtttttgttaattatttctactcat  24374600                            <----------DOF2        <------ZmHOX2a(1)  <---------ANAC58 -----TGA1a                <---------ANAC58                                                         < ======================================bZIP_DOF                                                     - ---->TGA1a--------->ATERF1(1)              ---------->DOF2             ---------->DOF2             < -------ANAC46  --------->LBD16           --------->MYB46(3) --------->ALFIN1      <---------ANAC46 -   gtgtgtattaggagtctccgagttaagatgcttttcaattgctaaccaaagtagaagattgagatggggattacaaaagaagatggtttggagtttggag  24374700  Previous    Next  AGI:  At5g60580.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G09760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18146.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, variant RING-type; (InterPro:IPR011016) Range:  from: 24371283    to: 24374176    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g60590.1    Description:  yrdC protein-related. similar to hypothetical protein [Vitis vinifera] (GB:CAN77236.1); contains InterPro domain SUA5/yciO/yrdC, N-terminal (InterPro:IPR006070) Range:  from: 24374247    to: 24375976    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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