Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->ANAC58                                                                   --------->ANAC46                                                                   --------->ANAC58                                          <-----------GT1         <---------LBD16                                       --------->YAB1            <-----------GT1                            *TSS<---------AHL20(2)            <---------GLK1(1)                            <---------RVE1(1)                 --------->GLK1(1)                            <---------CCA1(1)                <---------ARR11(3)  <------------CBF                           <---------ARR11(3)                --------->ARR11(3)<---------YAB1      --                           --------->ARR11(3)     --------->AHL20(2)         <-----------GT1       -- ---------DOF2  --------->GLK1(1)     <---------YAB1     ---------->DOF2     <---------ICU4     ----- -----DOF2      <---------GLK1(1)   --------->YAB1<---------AHL20(2)      --------->YAB1      -------   tctttgcccacgatttggatttctattcagatattttcttataataacatttttaaatataaagatatcacggtattaataactattgtgaacaaattca  24356100                                                                 <---------YAB1                   <---------YAB1                               <---------AHL20(2)    --------->ANAC58                                           --------->YAB1    --------->ANAC58                                          --------->ICU4  ---------->DOF2--------->YAB1                               <---------YAB1 ------->YAB1   <---------ATHB51                 <---------TOE2(3) ------->AHL20(2)<---------ICU4                  <---------TOE1(3)                       --------->YAB1 ---->WOX13(1)  --------->ICU4             --------->ICU4--------->ANAC55(2)      <------ZmHOX2a(1) ----->CBF  ------------>CBF      --------->AHL20(2)<----------DOF2      <---------GLK1(2)   attaaaaagccataaacaattatgctaacaaaacaaaaatatacacttattaagcttttatgtgattataattcaaattctctaggaaaaattgtaatct  24356200                                         --------->ANAC58           <------MYB83                                <---------AHL20(2)                  <------MYB46(1)                               --------->AHL20(2)                  --------->MYB46(2)                          --------->YAB1 --------->ANAC46          --------->MYB59                        --------->AHL20(2)                         --------->MYB111(1)               --------->YAB1--------->AHL20(2)                   <--------P             <---------TOE2(3)<---------YAB1                   <XXXXXXXXXXXXXXXXXXXXMIR426            ---------->DOF2<---------AHL20(2)                  <---------TOE2(3)                  <-- <-----------GT1    <---------YAB1       --------->ANAC58    ---------->DOF2      --------->YAB1  <--   attttacaaaattttaaagatgatgatataatattatatatacacacaaaaaaaaacttatagtaaaggtaggttttcaaaaactcataatgtgtttttt  24356300             <---------YAB1             --------->AHL20(2)             --------->AHL20(1)                                              <---------AHL20(2)             <---------AHL20(2)                                             --------->AHL20(2)            --------->AHL20(2)                                           --------->ATHB12          --      ----------->GT1                                                   <---------YAB1           <--- <---------YAB1            <---------MYB55(2)                   --------->At4g35610          <------- -------YAB1<---------AHL20(2)                                  <---------At4g35610        <--------- -------AHL20(2)           --------->MYB46(3)           ---------->ID1  --------->ICU4     <---------DAG2   tttattagtagtaattttattgttttctaaccactgaatttagtttatagcatgttttgtcacattagctggtgatgatttaatataaaactacttttta  24356400     <------------CBF                                       <---------ARR14(2) -------->DOF2                                              --------->GLK1(2) ------YAB1                                                 --------->ARR14(2)    --------->ARR11(3) ----TBP            --------->AHL20(2)                     <---------GLK1(2)      <---------ARR11(3) -DOF2<---------WOX13(1)                   --------->MYB52(1)      <------ZmHOX2a(2)     <----------DOF2   taaaagtaattgacaaaacaaaaaatataaaccccaaaaaaaaaaaaacagaagggggagagaatctcgatcaaaggcttcgaagctctctctttttttt  24356500                                                                    --------->At4g35610                                                                 <---------At4g35610                                                                 ------>ZmHOX2a(1)                                                    ====================HOX2a_HOX2a                      --------->ANAC46              ------>ZmHOX2a(2)          --------->ARR14(2)                      --------->ANAC58             =====================HOX2a_HOX2a                      ----------->HVH21            <------ZmHOX2a(2)<---------At4g35610                      --------->ANAC58            <---------ARR11(3)<---------ZAT2      ------->GAMYB <---------ANAC58 --------->ANAC46                --------->ARR11(3)--------->ZAT2     --------->MYB46(3) <---------ANAC46 --------->ANAC58          <----------DOF2      =================HOX2a_HOX2a   <---- <---------ANAC58 --------->ANAC58     <----------DOF2  ---------->ID1     <------ZmHOX2a(2)<--------   ttggtgtgtctaaatctctcacgcacgacgttgagagagctctttcctttgcgatcttgttgtcttcctctgctccgatcgaattcacaaccagctttaa  24356600                                    --------->HSFC1(2)                                    <---------HSFC1(2)                                    <---------HSFB2a(1)                                    --------->HSFB2a(1)                                   <---------ARR11(1)                                   ------->TEIL                                   <-----------ARR10                                   <---------ARR14(2)                                   --------->ARR14(2)                                  <-----------GT1   <---------GLK1(2)               --------->GLK1(2)                        <------MYB46(1) <---------YAB1                   <---------GLK1(2)                         <------MYB83 -----TOE2(3)                     <---------ARR14(1)                       <---------TOE2(3) --DOF2                           <---------CCA1(2)                        --------->MYB59   tgtatgattctcgctcttaccttcagtttatgttccgaatcttctcatgaaatttccattgcatccgatttcgaaattaggtttttttttttcaattttc  24356700                                                                    <---------YAB1                  <                                 ------>NtERF2                      <---------AHL20(2)              <                             --------->ANAC58                       --------->AHL20(2)              <                             --------->ANAC58                       --------->AHL20(1)          <----                  --------->ANAC55(2)     <---------ANAC46         --------->AHL20(2)       ---------              <----------DOF2--------->ANAC46            --------->At4g35610            <----------DOF2   aaaattttggtttgtgatttatgtgattttgaagccaccttcttgggggttcttaagtttgctgtagaattttattgttcttctctccgtctttgtttct  24356800          >>>>>>>>>WRKY6        --------->ZAT18        --------->WRKY12        --------->WRKY38(1)                       --------->YAB1     <---------ZAT6                        ----------->RAV1(2) ---------ANAC58                     <----------DOF2 ---------ANAC46                     <---------DAG2 <---------YAB1   <---------WOX13(1) <----------DOF2 ---------ANAC58          --------->DAG2 --------->ANAC46          --------->ATHB12  --------->ANAC58 ------DOF2         <---------WOX13(1)   --------->ANAC58         <---------YAB1     --------->ANAC58 ->ID1  --------->WRKY45 ---------->DOF2 --------->ANAC58  --------->ANAC46      --------->ANAC46   ttgcttagagttgactatttggattgaaaaagtttacacctttacgcctgaatcataatacccacaatgtgattgacttatctacacaagcttttgaatt  24356900                                                                  <---------REM1(1)                                                                <-------GAMYB                                                               --------->MYB52(2)                                                               --------->MYB55(2)                                                               <---------MYB46(3)                                                               --------->MYB111(2)                                                              <--------P                                                              <---------MYB55(1)                                                             <-------GAMYB                                                            <---------MYB46(3)                                                            --------->MYB55(2)                                                           <---------ANAC46                                                           <---------DREB2C(2)                                                           <---------RAP2.6(2)                                                           <---------DEAR3(1)                                                         ------------>AtMYB77                  <----------DOF2                    --------->ATHB12             <----------DOF2                         <---------AHL20(2)            <---------DAG2                          --------->AHL20(2)    --------->ALFIN1          ---------->ID1                            <---------AHL20(1)--------->At4g35610         <-----------GT1                            <---------AHL20(2)<---------At4g35610 --------->ALFIN1     --------->GLK1(2)      --------->At4g35610     --------->AHL20(1)<---------ZAT2<-----------GT1   tgatgagaatttgaccttttcttttttcgcagaagcattgtagttcaacttgaatttattggcggttgttgaagctgtgtagctattaacaattggggct  24357000  Previous    Next  AGI:  At5g60540.1    Description:  ATPDX2/EMB2407/PDX2 (PYRIDOXINE BIOSYNTHESIS 2); glutaminase/ glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ protein heterodimerization. Identical to Pyridoxal biosynthesis protein PDX2 (PDX2) [Arabidopsis Thaliana] (GB:Q8LAD0;GB:Q56ZP9;GB:Q9FKJ3); similar to putative pyridoxine biosynthesis protein [Nicotiana tabacum] (GB:AAS92257.1); contains InterPro domain SNO glutamine amidotransferase (InterPro:IPR002161) Range:  from: 24353849    to: 24356028    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60548.1    Description:  CPuORF62 (Conserved peptide upstream open reading frame 62). similar to CPuORF61 (Conserved peptide upstream open reading frame 61) [Arabidopsis thaliana] (TAIR:AT3G45242.1) Range:  from: 24356455    to: 24359816    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g60550.1    Description:  GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2); kinase. similar to GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G45240.2); similar to GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G45240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21831.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 24356455    to: 24359816    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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