Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ICU4                                                                                    ------>NtERF2                                                                                   --------->ANAC46                                                                                   --------->DEAR3(1)                                                                                   --------->RAP2.3(3)                                                                                   --------->RRTF1(2)                                                                                   --------->RAP2.6(2)                                                                                   --------->RAP2.3(2)                                                                                   --------->DREB2C(2)                                                                        <---------AHL20(1)                                                                        --------->AHL20(2)                                                            --------->ANAC55(2)    --------->RRTF1(3)                                                            <---------ANAC55(1)   --------->ERF1                                                            <---------ANAC46      --------->ORA47(2)                                                            <---------ANAC58      --------->RAP2.3(1)                                                            <---------ANAC55(2)   --------->RRTF1(1)                                                            <---------ANAC58     <---------RAP2.3(1)                                                           --------->MYB52(2)   --------->ANAC46                   ------->TEIL                    <---------YAB1       <---------AHL20(2)        <--      <---------TOE2(3)                  <-----------GT1  <-----------GT1     <-----------GT1 -------     --------->MYB52(1)             --------->ARR11(3) <---------MYB46(3)<---------AHL20(2) <--------   <---------MYB52(2)     --------->WOX13(1)     <-----------GT1       --------->ICU4<------NtERF2===   aaacaattaacgaaaatgatgtatcagtaaatcaaaaacatattgaccatattacgcttgttacttgttagtaattttttttacgccgccatttttgttg  24323200                                                                          <---------HSFB2a(2)                                                                   <---------AGP1                                                                   --------->ARR11(3)                                                                   --------->ARR14(2)                                                           ---------->DOF2--------->HSFB2a(2)                             <---------YAB1               <---------AHL20(2)                       --------->AHL20(1)              <---------ICU4 <----------DOF2                     <---------ATHB51                 ===============================================            <---------ARR11(3)                        --------->ICU4 ------>ZmHOX2a(2)            <---------AHL20(1)                        --------------->AGL15            --------->ARR11(3)                  --------->ZAT6     <---------ARR11(3)    <---------AHL20(2)--------->YAB1           <------ZmHOX2a(2)   <---------ARR14(2)    --------->AHL20(2)--------->AHL20(2)      --------->ARR11(3)  <---------CCA1(2)       <---------- -------------AGL15  <---------ATHB12         <---------ARR11(3)--------->ALFIN1        <-------TEIL --->ID1 --------->AHL20(2)<-----------GT1---------->DOF2 --------->AHL20(2)    <---------GLK1(2) ---RAV1(1) --------->AHL20(1)       --------->CCA1(2)<---------------AGL15     <---------ARR14(2) =====================================================================MADS_MADS --------->ARR14(2)   ctatatttaaaaaaaatattccaataatattactattagatatgaaaagatcactactaattaaaggtggatctttctggcagatttggatacattgtac  24323300                                                              <---------YAB1                                         =====================================================MADS_MADS                         --------->AHL20(1)         <---------WOX13(1)                         --------->AHL20(2)        <------------CBF                         <---------AHL20(2)       --------->ATHB12                        --------->AHL20(2)   <---------ARR11(3)                        <---------AHL20(2)--------------->AGL15                   <<<<<<<<<<WRKY63      ----------------->AGL3               <---------------AGL15             <---------YAB1          <---------ANAC58         <---------TOE1(3)            --------->ARR11(3)       <---------ANAC58         <---------TOE2(3)            <---------ARR11(3)   <------------CBF<---------YAB1          ----------->GT1 =========================================================MADS_MADS <---------YAB1   ----------->GT1 --CBF    ----------->GT1<---------AHL20(1)  --------->ARR11(3) --------->ARR11(3)--------->YAB1   aaatgaaatgagaagataatagtcaaataaatttgtattgcataccatatattgattgaatattaagattatgaaatgttacaaaaatagtaaaattcaa  24323400                                                                    ----------->GT1                                                                  <---------ANAC46                 --------->WOX13(1)                             <------MYB83                --------->AHL20(2)                              <------MYB46(1)                <---------AHL20(2)                         --------->ATHB12             --------->YAB1                                <---------AHL20(2)            <---------YAB1                                 <---------ICU4            <---------AHL20(2)                             --------->ATHB51           --------->AHL20(2)                              --------->AHL20(2)           --------->AHL20(1)                             --------->ICU4           <---------AHL20(1)                           <---------ICU4        --------->AHL20(2)                              --------->YAB1      --------->AHL20(2)                               --------->AHL20(2)     --------->YAB1  ---------->DOF2                   <---------AHL20(2)               <-------TEIL    --------->AHL20(2)           <-----------GT1     --------->TOE2(3)             ----------->TBP  <   attcaaataaaaatataataaatcaaagttgaaatttactcatagacaactcaaatattaattatttggtttgtaatattctgctataaatacatgagca  24323500                                                                  ---------->DOF2                                                               --------->ANAC58                                                               --------->ANAC58                                                              --------->DAG2                            <-----------GT1   <---------------AGL15                     ------>ZmHOX2a(1)        --------------->AGL15                 ------>MYB46(1)             <-----------------AGL3                 ------>MYB83  <---------GLK1(2)       ----------->GT1                        -------               --------->AtMYB61           --------->ZAT6    ---------->DOF2  --------->AHL20(2) ---- ---------YAB1------------>CBF<---------At4g35610    ----------->GT1    ----------->GT1  ----------->GT1   ttttcattctacaaacaccaatcctatattttagcttctcaaatatcactaaaaatggtgaaaaaaagcaaaggtcgtcaaaaaatagagatggtcaaaa  24323600                                          ------>ZmHOX2a(2)                                         --------->CCA1(2)                                         <------ZmHOX2a(2)                                        --------->ARR14(2)                                        <---------AGP1                                        <---------ARR11(3)                                      xxxxx                                        --------->ARR11(3)                                    xxxxxxx                                        --------->GLK1(2)                            <---------ANAC46                                        --------->AGP1               <----------DOF2<xxxxxxxxxxxxxxxxsmallRNA(s)                         <---------DAG2 <-----------ARR10--------->DAG2       <----------DOF2--------                         <----------DOF2<---------ARR14(3)         --------->At4g35610--------->ZAT18              --------->TOE2(3)         <---------ARR14(2)         <---------At4g35610<---------ZAT18      ---------->DOF2 <-----------GT1   --------->ARR14(3)       <---------ZAT18  <-----------RAV1(1) -->ICU4   <-----------GT1            ----------->ARR10---------->DOF2    <---------ZAT18  <---------O2 ------->GT1  --------->TOE1(3)  ---------->DOF2<----------DOF2  --------->ZAT18xxxxxxxxxxxxxxxx>smallRNA(s)   tgaaaaatgaaagtaaccttcaagttactttttcaaaaagaagatctggacttttcaaaaaggctagtgagctttgcacactttgtggtgcagaagtggc  24323700                       --------->DAG2             <---------ZAT2                                             --------->YAB1              -             ----------->RAV1(2)          --------->AtLEC2             <-------TEIL             ----- xxxxxxxxxxx>smallRNA(s)    <----------DOF2                        ------>ZmHOX2a(2)     <---------ALFIN1 xxxxxxxxx>smallRNA(s)---------->DOF2  --------->WRKY18(1)    <---------WOX13(1)     ------->GAMYB -- ->ALFIN1    <---------At4g35610 <----------DOF2   <---------YAB1  ==================================   catagttgtgttctcacctggtcgaaaagtcttttcttttggtcatccaaatgttgattctgtaattgatcgattcataaacaataaccctctacctcct  24323800                                                                 --------->At4g35610                                                               <---------ICU4                                                            --------->YAB1                                                      ------>ZmHOX2a(2)             --------->ANAC58                        <------ZmHOX2a(2)             --------->AtLEC2                        --------->At4g35610             --------->ANAC58                       <---------AGP1   --------->ANAC46                                 <---------ARR14(2)  ------>MYB83                                      --------->ARR14(2)  ------>MYB46(1)                                   --------->ARR11(3) ----------->RAV1(1)                                <---------ARR11(3) -------->AtMYB61                                   --------->GLK1(2)     --------->ANAC55(2) ->ZmHOX2a(1)--------->ANAC46               <---------MYB46(3) --------->YAB1             <---------YAB1 ------->MYB46(3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->YAB1 ==HOX2a_HOX2a     --------------------->WRI1      <------ZmHOX2a(1)    <-----------RAV1(2)         <   caccaacacaacaacatgcaacttagagaaactcgtcgaaattcgattgttcaggatctgaataatcatcttactcaggtaatcttactcttatttttaa  24323900                                                                                                  ---                                                                           <---------AHL20(1)     ---                                                                           --------->AHL20(1)     <--                                                   ----------->GT1     <---------AHL20(2)         ---                                                  <---------TOE1(3)   --------->AHL20(2)         <--- ----------->GT1                           <<<<<<<<<SARD1         <---------AHL20(2)             <--- --------->ATHB12            ------->TEIL  <<<<<<<<<CBP60g   <----------DOF2--------->AHL20(2)  <---- ---------YAB1   <---------ZAT6--------->YAB1     <---------TOE2(3)<---------AHL20(2) ---------->DOF2   gtatgattaaaacaaaatagtgttttctatgaatcataaaacccaaatttctatggttaaattctttttttatttaatatatataagtaaaagttttcgc  24324000            <---------AHL20(1)         --------->AHL20(2)        <---------AHL20(2)    --------->AHL20(2) ------>ZAT2--------->AHL20(1) ------>At4g35610 -------At4g35610                                            <---------CCA1(2) -------->GT1                             --------------->AGL15           <---------YAB1 ------TOE1(2)                            <---------------AGL15   <---------YAB1 ------TOE2(2)         --------->TOE2(3) ----------------->AGL2   ------>ZmHOX2a(1) -------RAV1(2)<---------AHL20(2) <----------DOF2          --------->AHL20(2)   aggtgaataaataatatataaaaaacattagacagtctttttctccataactagaatagatttatatcctaatagtatgttagataaaaatgccgatgaa  24324100  Previous    Next  AGI:  At5g60440.1    Description:  MADS-box protein (AGL62). similar to MADS-box protein (AGL40) [Arabidopsis thaliana] (TAIR:AT4G36590.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63001.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 24323555    to: 24324746    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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