Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------ANAC58            <---------ANAC46                          <---------At4g35610              --------->ANAC46      <---------YAB1    --------->GLK1(2)             --------->At4g35610      --------->TOE2(3)      <---------AtMYB61 <-----------ARR10         --------->LBD16            ------>MYB46(1)  <------MYB46(1)      <---------GLK1(2)         <---------LBD16             ------>MYB83  <------MYB83<---------ZAT6                     <-----------RAV1(2)        ----------->RAV1(1)    <- --------P  <---------ANAC58         ---------->DOF2<------ZmHOX2a(1)--------------->AtSPL8        <-   tagttggtatggttgagtgttacaagaatctacttgctacaaagtgacaatccaggagctgttcatagtacatagtaccaacattatacaagggactagt  24309900              <----------DOF2                                         --------------->AtSPL8             <---------ANAC58        --------->ANAC55(2)              <---------------AtSPL8             <---------ANAC58   ------>MYB83                     <---------TOE2(3)        --------->ATHB12        ------>MYB46(1)         <------ZmHOX2a(1)   <---------MYB59 --------TOE1(3)               ----------->RAV1(1)  ---------->DOF2   <---------------AtSPL3 --------TOE2(3)        --------------->AtSPL8 <-----------HVH21 <---------TOE1(3) <-----------GT1  <   tatggataagtcattgcttttgagacatagtaccaacatatgtaacatgggtcacaaaggactagttatggataagtaccaaaattttctccactatcta  24310000                                                               --------->ARR14(2)                                                        <---------ZAT14 --------->ANAC46                                                        --------->ZAT14 --------->ANAC58                               <-------TEIL        --------->AHL20(2)   --------->ANAC58      ------->TEIL     --------->REM1(2)   --------->At4g35610 <---------ARR14(2) -------TEIL      --------->At4g35610     <---------ARR11(3)----------->GT1           <---------YAB1   tgttcatgaacatatgtagcatctgtgtatagatgcaaaatcaagagctcaaataaactacagagtatatacacacacaaaaaaacttatcaatgtgaat  24310100                                    --------->TOE2(3)                                    --------->TOE1(3)                                   <---------ANAC46                                >>>>>>>>>ARR2                                  <-----------------------TaNAC69(2)         <---------ICU4                                 <---------TGA2(2)    <---------O2           --------->ATHB12                                ----------->HVH21     <---------TGA1a        <--------HAHB4                                ----------->TGA1      --------->TGA1a       <---------YAB1                       <---------ICU4                 --------->O2        --------->YAB1                       -------->ATHB1--------->DOF5.7(2)              --------->LBD16                       --------->ATHB12           <---------MYB59--------->YAB1  <---------YAB1                      <---------ATHB12 <---------DOF5.7(2)    --------->YAB1--------->ICU4         <---------TOE2(3)    <---------At4g35610<---------bZIP60(1)  ------>ZmHOX2a(1)           ---         <---------TOE1(3)    --------->At4g35610--------->bZIP60(1)  <---------YAB1       ----------   tcttggaaatgaaggtaatgccaaatcattggagatgacgttaacaacatgacctcacttgggataataatcctgataatcatttgattgtagccacata  24310200                                                                                           ----------                                                                                          <---------AHL20(1)                                                                                       <---------AHL20(2)                                                                                       --------->YAB1                                                                                 ----------->GT1                     <---------ICU4                                             <---------TOE1(3)                     --------->YAB1                                     --------->WRKY12  --------->AHL20(1)                    --------->ICU4               <---------ZAT6         --------->WRKY38(1)--------->AHL20(2)    <---------At4g35610 --------->ATHB12         ----------->GT1      <----------DOF2  --------->AHL20(2)    --------->At4g35610<---------YAB1      ----------->HVH21 --------->ZAT18    <---------TOE2(3) ------->DOF2       <---------ATHB51   --------->ARR11(3)    --------->ZAT14--------->TOE2(3)<------- ->RAV1(1)     --------->YAB1         --------->YAB1         <---------ZAT18--------->TOE1(3)--------   gaaagcagcaaactaaatgacaattatgatttaagagcaaagatagtgacagtgtaaattaagtccactcttctttgaccttaaggtaataatatatata  24310300                                                                                        <xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <---------TOE1(2)                                                                                       xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <-----------RAV1(2)                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             --------->ARR14(1)                                                                             --------->CCA1(2)                                                                            --------->ARR14(2)                                                                            --------->ARR11(1)                                                                            <---------ARR11(3)                                                                            <---------GLK1(2)                                                                            --------->ARR11(3)    ----------->GT1                                                         <---------ARR14(2) xxxxxx ->TBP               --------->ATHB12                <---------TOE2(3)  ---------->DOF2xxxxxxxxxxxxxx --AHL20(2)        *TSS                     <---------ANAC58           --------->AHL20(2)<------ZmHOX2a(1) --->TBP          ----------->GT1           <---------ANAC58         XXXXXXXXXXXXXXXXXXXX>MIR399E   tggatgaggtgatactaatagagtgattacacatacaagtggtcttgcttcttctatggttttaaaactgcaaataaagatttgcttcgcaggagagata  24310400                                                           ------>ZmHOX2a(1)                                                           ==================================HOX2a_HOX2a    <---------ALFIN1                                      --------->TOE2(3)  <-----------HVH21                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxsmallRNA(i)                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xx>smallRNA(i)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(l2)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxx>smallRNA(fl3)                --------->At5g28300 --------->ICU4 x>smallRNA(s)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <- xxxxx>smallRNA(i2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                     <---------ARR11(3) xxxxx>smallRNA(l2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <---------TOE2(3) x>smallRNA(i)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <------ZmHOX2a(2) xxxxx>smallRNA(se3)           ----------->HVH21--------->ANAC46             <---------LBD16       <- xxxxxxxxxx>smallRNA(le3)      ----------->TGA1<---------TOE1(2)             <---------------------WRI1 xx>smallRNA(s)             <---------ZAT6    ------>ZmHOX2a(1)      ------->TEIL    --------->ARR11(3)   gcgccatcacctcttctaagaagttaactagtggtgacggtatctctcctacgtagcaatccttatatatgcatcttaatacggagagatcaaggtattt  24310500         <---------ICU4         --------->YAB1        <---------ATHB12                                                                            - <---------MYB46(3)            ------->TEIL                               --------->ZAT6           <- --------At4g35610     ---------->DOF2    --------->YAB1             ----------->GT1       ------->TEIL ------GAMYB<-----------GT1  <-------TEIL<-------TEIL   <----------DOF2 <-----------GT1  --------->YAB1   cagttgttcaataatcaccctctaacaaagatgcatcttaatattcataaactattctctttctacttacatagtaacaccataaaaacaatgaaactgc  24310600                                          <---------------AGL15                                          <---------MYB59                                          --------->TOE2(3)                                          --------->TOE1(3)                                          --------------->AGL15                                         ----------------->AGL1                                         ----------------->AG                             ------>ZmHOX2a(2)                           <---------ARR11(3)                           <---------ANAC58                           --------->ARR11(3)                           <---------ANAC58       --------->ARR11(3)  <---------ARR14(2)                          <-------TEIL      ==============================HOX2a_HOX2a      --------->GLK1(2)--------->ARR11(3)      <------ZmHOX2a(1)    --------->ARR14(2)    --------->YAB1     <------MYB83 -------->LBD16         --------->HSFB2a(2)     <---------YAB1      <------MYB46(1) --------ANAC46         <---------HSFB2a(2)   --------->YAB1       --------->MYB59              <----   tccgtagaggaccttggtttgagcctctagatcgtcttctcttacctaaaatgataatctgttccaagataggttcttgctatttgctcaaatatgtttt  24310700                                          <---------ALFIN1                                         <---------At4g35610                              --------->ANAC55(2)                         --------->ZAT2  --------->At4g35610                                    -----                         <---------At4g35610 --------->ARR14(2)                              <-------                         --------->At4g35610 <---------ARR14(2)                              <-------             <---------At4g35610      --------->At4g35610                          --------->AHL20(2)    <---------YAB1<---------ZAT2 --------->ATHB12        ---------->DOF2  <----------DOF2    <------- <----------DOF2  --------->ZAT2<---------YAB1   ------>ZmHOX2a(1)        <---------DAG2    <-------- -----AtMYB61--------->At4g35610--------->ICU4  --------->TOE2(3)    ---------->DOF2       <---------ANAC46   ggtcttttgaatgttagctcagcaaggagctcacatgattagcagcacatcctcagcctgaaagtttcaagaaaagctttatcaatttaagagttgtgta  24310800  Previous    Next  AGI:  At5g60408.1    Description:  MIR391; miRNA Range:  from: 24310319    to: 24310524    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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