Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ARR11(3)     <---------TOE1(3)     <---------TOE2(3) -------->TOE2(3) -------TOE1(3) ---------------AGL1                                           <----------DOF2 -------TOE2(3)                                          <---------YAB1 ------DOF5.7(2)                                      <----------DOF2   <----------DOF2            -- --->DOF5.7(2)                                     <---------ARR11(3)   <---------DAG2   --------->WOX13(1) --MYB46(3)                 <------ZmHOX2a(1)      --------->ARR11(3)<---------ALFIN1  ------------>CBF   aacgtttaaggtatcttgaagaaccaagtaggaattggaatgagcaaaaccaagagcttttgattcttttcccacttttgtattcaaaaatcaatcgtct  24268400                                                                            --------->YAB1                                                                         --------->WOX13(1)                                                                       ------------>CBF                                                                      --------->ANAC58            ---            ----------->HVH21                                         --------->ANAC58          -----          ----------->GT1           <---------RVE1(1)          <---------WOX13(1)               <----      --------->ARR14(2)            <---------CCA1(1)       <---------YAB1 <---------ATHB12     <----      <---------ARR14(2)           <---------ARR11(3)       <---------AHL20(2)                  -----  --------->At4g35610              --------->ARR11(3)      --------->AHL20(2)                   -----  <---------At4g35610          ---------->DOF2 ----------->GT1<------------CBF               ------>ZmHOX2a(1) -------->DOF2   --------->AtLEC2<---------TOE2(3)         <---------AHL20(2)             ---------->ID1   atgaagcggaaactgtgacattcaaattcacaacaaaggtattttgaaatagtaaacacattttaattgaagaagcaatcacattcagacttgtcctcac  24268500                                                  --------->ICU4                                   --------->ANAC58                                    --------->HSFB2a(2)                                   --------->ANAC46  <---------WOX13(1)                <---------HSFB2a(2) -------->HVH21           <------MYB46(1)       <------------CBF                  <------ZmHOX2a(1) ---->ANAC55(2)           <------MYB83       <---------ANAC58             <---------ARR14(2) -----TGA1a               ----------->GT1    <---------ANAC58             --------->ARR14(2) -----O2               --------->CCA1(2)     <---------ANAC46     --------->MYB52(1)  <---------LBD16 ---->TGA1a         ----------->ARR10   ----------->RAV1(2) ----------->GT1--------->CCA1(2)<-------- ---->O2--------------->AGL15      --------->ANAC58--------->ATHB12      <------ZmHOX2a(1)  ---------   atgacagtaaccatgaagagaagagatttggttaaaaacgaaacctggcgtattgatttatgaagaaaaaacagaggatatgaaggactcgggaagcagg  24268600                                                                           --------->ATHB12                                                                           -------->ATHB1                                                                           <---------ICU4                                                                           --------->ATHB51                                                                          <---------ATHB51                                                                          <---------AHL20(2)                                                                        <---------ICU4                                         --------->CCA1(2)--------->ANAC55(1)                             ------>ZmHOX2a(2)            --------->ANAC58--------->AHL20(1)                            <------ZmHOX2a(2)             --------->ANAC46<---------YAB1                           <---------ARR14(2)             --------->ANAC58--------->ICU4                           --------->ARR14(2)             <---------ANAC55(2)                    ----                          <------ZmHOX2a(1)               --------->ANAC55(2)<---------YAB1     ----- ------------>CBF      --------->HSFB2a(2)         <---------ZAT6      --------->ICU4       <-------- -ZAT2                 <---------HSFB2a(2)         ----------->GT1<---------ANAC55(2)       --------- >ZAT2           <---------YAB1  <---------ATHB12----------->GT1  ----------->GT1      <---------YAB1   gtctacaatggagagagctatgcttcgaggatccaatggagagctatgcggtagtgaaaaacgtaatctcgtaaaaattattgttgatttcgattgcaca  24268700                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                           --------->GLK1(1)                                                                           <---------GLK1(1)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                          <---------ARR14(2)                                                                          <---------AGP1                                                                          --------->ARR14(2)                           --------->GLK1(2)                              <-----------ARR10                          <---------ARR14(2)                          <-------TEIL                          <---------ARR11(3)                         --------->ARR14(1)                          --------->ARR14(2)                         --------->GLK1(2)                          <---------GLK1(2)                         <---------ARR14(2)                          --------->ARR11(3)                        --------->ARR11(1)                         <---------HSFC1(2)                         <---------GLK1(2)   --------->LBD16 ----->At5g28300         <---------HSFB2a(1)         --------->HSFB2a(2) <---------CCA1(2)        <-- ------>GT1              --------->HSFB2a(1)       <------ZmHOX2a(2)--------->ARR14(2) --------->LBD16 -ZAT14                  --------->HSFC1(2) <------ZmHOX2a(1)     ----------->ARR10  ----------->RAV1(2) >ZAT18 ---------->DOF2 ----------->ARR10   ==============HOX2a_HOX2a--------->CCA1(2)<---------LBD16   gtgaaaatagaaaagaaatagccacgaagattcttcgaaatcgagaggaagagatcgagaattgaaacgagattcggatctctctctccctggggaagac  24268800                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                            <---------PCF2                                                          <                          <---------ANAC58                                                         --                          <---------ANAC58                                                        <--               --------->At4g35610                                                               ----               <---------At4g35610                                                 <---------AHL20(2)               <---------ZAT2                                                     --------->AHL20(2)<              ----------->RAV1(1)                                                 --------->AHL20(1)-    ----------->HVH21    <-----------RAV1(1)                                      <---------AHL20(1)-   --------->LBD16       --------->ALFIN1                                         <---------AHL20(2)> <---------LBD16      --------->GLK1(2)*TSS      --------->ZAT14           <---------At4g35610 ------ ---------HVH21--------->ZAT2------>NtERF2       <---------ZAT14           --------->At4g35610 <-----   agtcgcgcgactcgagcagcagagattgtggtgcctactgagtacctcgtgtgaagtctaaaaacagcgtcgttttcagctaaataaaattctacaaaaa  24268900 ---------TGA2(1) ---------O2 ---------bZIP60(1) -------->bZIP60(1) ---------ANAC46 --------->STF1 -------TGA2(2) ------->TGA1                                                                               --------- ---------bZIP60(2)                  <-----------GT1--------->LBD16              <-----------GT1----- -------->O2                       <---------AHL20(2)          --------->ZAT6  --------->AHL20(2) -------->TGA2(1)        --------->At4g35610        <------NtERF2              <---------AHL20(2)   - >>>>>>>>>HY5            <---------At4g35610       --------->ANAC58        --------->AHL20(2)   <---- --->YAB1         <---------YAB1 <-----------TBP   --------->ANAC58        <---------AHL20(2)   ----- ----ICU4   --------->ICU4  ------>NtERF2         <---------LBD16  <---------ZAT14 --------->YAB1  --   tgacgtcgtttggaataattttgtttgggctgcctatttatacatgtctaggcccgcgaattttaagtctacagtatttatttaaacatcatacacaaaa  24269000                                                                                      <---------ICU4                                                                                      <-----------GT1                                                                                   --------->YAB1     ----------->GT1                                                              <---------AHL20(2) >ANAC46   --------->ICU4                                                         --------->AHL20(2) ---->ARR14(2)                         <---------HSFC1(2)           <----------DOF2<---------ICU4 -------->LBD16                 --------->MYB52(1)      ----------->GT1 <---------ANAC58 -----ARR14(2)           ----------->GT1 --------->MYB52(1)  --------->AHL20(2) --------->TOE2(3) ---->GLK1(2) <---------YAB1  <---------MYB52(2)      <------ZmHOX2a(1) <---------ANAC58    --------- ------->ANAC46  <-----------------AGL1--------->HSFC1(2)<------ZmHOX2a(1)    <---------AHL20(2) <---   tccgaaacagataattttgattcaaattggtaactatcggaagtatcggatgagaaggaggaaaaaaatgctttgcttatttcattaattactaccttga  24269100                  <---------AHL20(2)                  --------->AHL20(2)                  --------->ATHB12          <-----------GT1                         --------->MYB52(1)       --------->YAB1                           <---------MYB59    <----------DOF2                            --------->ANAC55(2)                         <---------    --------->TOE2(3)                          <---------ANAC55(2)  ----------->GT1    <---------AHL20(2) --------->ARR11(3)                      <---------DAG2   --------->YAB1           <----------DOF2 >TOE2(3) --------->MYB52(1)<---------YAB1   <-----------GT1      ----------->GT1 <---------DAG2 --------GT1     --------->AHL20(2)      <----------DOF2<---------WOX13(1)     <-----------GT1 ------   tactatctttaataacagatttaatttgatattatagattccactttttacttaactgattgataagatggagataatagtttacctttttatttactgg  24269200                                                                                    <---------DEAR3(2)                                                                                    <------MYB83                                                                                    <------MYB46(1)                                                                                <---------ANAC58                                                                --------->ANAC58<---------bZIP60(2)                                                     <---------ANAC58           <---------ANAC46                                                     <---------ANAC58          <---------TOE2(3)                      --------->WRKY12              <---------HSFC1(2)       ----------->TGA1 --GT1   --------->GLK1(2)                          --------->HSFC1(2)       ----------->HVH21 ----->GT1 <---------AHL20(2)<----------DOF2<---------TOE2(3)   --------->ANAC58<---------ANAC58  <--   ttaaaatcgagaatttatggtccattgacttcttttgaccaagtttaacgaagaagcgtctcatgtaagctattcacaaatgacgttggtaccccttccc  24269300  Previous    Next  AGI:  At5g60230.1    Description:  SEN2 (SPLICING ENDONUCLEASE 2); tRNA-intron endonuclease. Identical to tRNA-splicing endonuclease subunit Sen2-2 (SEN2) [Arabidopsis Thaliana] (GB:Q9LSS3;GB:Q3E887); similar to ATSEN1 (SPLICING ENDONUCLEASE 1), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT3G45590.1); similar to ATSEN1 (SPLICING ENDONUCLEASE 1) [Arabidopsis thaliana] (TAIR:AT3G45590.2); similar to unknown [Populus trichocarpa] (GB:ABK93461.1); contains InterPro domain tRNA-intron endonuclease; (InterPro:IPR006676); contains InterPro domain tRNA intron endonuclease, catalytic C-terminal; (InterPro:IPR006677); contains InterPro domain Endonuclease TnsA, N-terminal/re Range:  from: 24267317    to: 24268839    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60240.1    Description:  unknown protein Range:  from: 24268608    to: 24268854    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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