Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------MYB52(1)            <-------GAMYB           <---------MYB46(3)           <---------DEAR3(2)          <---------DEAR3(1)        <-----------HVH21                            --------->ANAC58        ------------>AtMYB77                         --------->ANAC46      <------NtERF2                                  --------->ANAC58      <---------At4g35610                  <---------ZAT2      --------->At4g35610                  --------->ZAT2  <-----------HVH21                       --------->ALFIN1           --------->ALFIN1 ------>ZmHOX2a(2)    --------->ATHB12  <---------ANAC58           <---------ANAC58 ------->ARR11(3)    <---------YAB1     <---------ANAC58     --------->ETT(2) --------ARR14(2)  --------->bZIP60(1)------>NtERF2<---------ALFIN1<---------ANAC46 ------->ARR14(2)  <---------bZIP60(1)<---------At4g35610 <------MYB46(1)       <---------ZAT18 --------ARR11(3)--------->YAB1       --------->At4g35610 <------MYB83          --------->ZAT18 <---- ----ZmHOX2a(1) <---------YAB1--------->ZAT18  <-----------HVH21   <---------ANAC58     --------->SPL7   ggatcgtcagcgtcggttatgatatcattgagcgcgatgcagccgtgctggtcacacgctaggtcgagagcgtggtagagaatgcgctcgtacaatgcct  24250800                                                <---------ANAC58                                                <---------ANAC58                                                <---------ANAC55(1)                      --------->At4g35610                                                <---------ANAC55(2)                      --------->RAP2.6(3)                                          <---------TOE2(2)                         --------->ANAC58                                        --------->TOE1(2)                        ------>NtERF2                                       <---------ANAC55(2)                     --------->RRTF1(1)                                       --------->TGA1a                         --------->RAP2.3(1)                                       <---------TGA1a                         <------NtERF2                                       --------->ANAC55(2)        <---------ANAC46<------NtERF2                                       <---------O2          <---------ANAC58 <---------ORA47(2)                                       ============================MYC_MYB    <---------DEAR4(2)                                       <---------ANAC46   <---------DEAR3(2)  <---------ATERF1(1)                                       --------->O2      <---------DREB2C(2)  <---------RAP2.3(1)                                   <-----------TGA1      <---------At1g77200 <---------RAP2.3(2)                                   <-----------HVH21  <-----------RAV1(1)   <---------At4g35610                                --------->ARR14(2) --------->ARR14(2)       --------->ATERF1(1)                                <---------ARR14(2) <---------ARR14(2)       --------->At4g35610                               <---------CCA1(2)<---------ANAC46  <---------bZIP60(2)   --------->MYB52(1)                           <---------ANAC58     --------->ANAC55(2) --------->ALFIN1--------->ANAC58 --------->YAB1            <---------ANAC46    <-------TEIL<-------GAMYB <------ZmHOX2a(1)  <------NtERF2 ------DOF2                <---------ANAC58 <------ZmHOX2a(1)<---------ANAC58<---------DEAR3(1)   ttttcatcaccttgtcgaaaacgaccatggctcgtatcgtcacgtaggatgcgtatttgtcggtcgtgatgtggaggaagcggcgcaagatagcggcaca  24250900                --------->At4g35610                <---------At4g35610             --------->TGA2(2)            <-----------TGA1              <-------MYC3            <-----------HVH21             ------->MYC3           --------->ANAC46               <-------MYC2           --------->bZIP60(2)            ------->MYC2           --------->ANAC58              --------->ANAC46                                           -           <---------O2                  --------->ANAC58                                           -           --------->ANAC58            <---------ALFIN1                 <---------ETT(2)            -           --------->TGA1a            --------->ZAT14            ----------->HVH21                ---           --------->O2               <---------ZAT18          <---------MYB46(3)               -----          <-----------bZIP911(1)   --------->At4g35610       <---------ANAC58                   -----          <-----------STF1      <---------HSFC1(2)           <---------ANAC58                   -----         <---------ALFIN1       --------->HSFC1(2)           <-------GAMYB                      -----       <------NtERF2            <---------HSFB2a(1)    <---------ARR14(2)<---------DDF1         <----       --------->ATERF1(1)      --------->HSFB2a(1)  --------->DEAR3(1) --------->ETT(2)        -----     <---------ANAC58         <------ZmHOX2a(1)--------->HSFB2a(2)     <------ZmHOX2a(2)  <----------     <---------ANAC58      ------>NtERF2 --------->ANAC58    ========================================   gaagaaggcgtccacgtcatctgatttgccgaggagcttctgcacgcgtctcgagccgaacttggttgtgacgatcgacatgaagtaatcggagtcagac  24251000                                                                                  <---------ATHB12                                                                                --------->WOX13(1)                                                                              <------NtERF2                                                                              <---------MYB52(1)                                                                             ------>NtERF2                                                                             <-----------HVH21 -------->ANAC46                                                             <-----------TGA1 -------->ANAC58                                         <---------TOE2(3)   <---------RAP2.6(3) -------->ANAC58                                   --------------->AGL15    --------->RAP2.3(3) ------>TGA2(2)                                    <---------------AGL15    --------->ATERF1(2) ---->ANAC58                                     <---------CCA1(2)          --------->DEAR3(1)     <- ---->ANAC46                                 <---------ARR11(3)             <---------ATERF1(2)    <- ---->ANAC55(1)                              --------->ARR11(3)            --------->RAP2.3(1)     -- ---->TGA1a     =====================================HOX2a_HOX2a   --------->ANAC58     <------MYB46(1) -----TGA1a     ----------->RAV1(2)    <----------DOF2  ---------->DOF2  --------->DEAR3(1)      <--- ---->ANAC58    ------>ZmHOX2a(1)      --------------------->WRI1  --------->ANAC58     <------MYB83 -HVH21  ------>NtERF2      <---------MYB52(1)<------ZmHOX2a(2)    --------->ANAC46--------->ATHB12-- =====MYC_MYB   --------->At4g35610----------->HVH21 <----------DOF2  --------->AtMYB61--------->MYB59   gtaagcaacgaggccatcctctgaagctctgttttgtctgactttgagatcatctctttaaagtaagacacaccatcgccgtcagtcattaggttgaaca  24251100                           ------->PIF5                           <-------PIF5                           ------->MYC2                           <-------MYC2                           <-------MYC3                           ------->MYC3                          --------->ALFIN1                          --------->TGA1a                          <---------TGA1a                          <------NtERF2                          <---------ANAC58                          <---------ANAC58                          <---------ANAC46                         ------>NtERF2                        <---------ANAC58                        <---------ANAC46                        <---------ANAC58                       --------->ATERF1(1)                      <---------ATERF1(1)                      <---------DEAR4(2)                     <---------DEAR3(1)                  <---------ANAC58                  <---------ANAC58                 <------NtERF2                 <---------LBD16               --------->ATERF1(1)               <---------DEAR3(1)               <------NtERF2--------->ALFIN1               ----------->HVH21             <---------ANAC58             <---------ANAC58             <---------ANAC46   <---------ANAC58  --------->ALFIN1   <---------ANAC46 <------NtERF2   <---------ANAC58 --------->ATERF1(1)<---------HSFB2a(2)  <-------TEIL --------->ALFIN1<---------PCF2<------ZmHOX2a(1)                  ---------->DOF2 --------ZAT2<---------bZIP60(2)       --------->HSFB2a(2)                   ----------->GT1 --------At4g35610<---------ANAC46  <---------ARR14(2)    --------->LBD16    <------MYB83 ------->ZAT2--------->ALFIN1  <---------ANAC46 <------ZmHOX2a(1)            <------MYB46(1)      <-- ------------------WRI1<------NtERF2--------->ARR14(2)  <---------LBD16     --------->MYB59      ---- ------->At4g35610<---------DEAR3(1)--------->GLK1(2) <-----------GT1       --------->MYB46(2)   <---   gagctgcgtgcaagggcgtggcggaggcgcgtggggcgaatccagaaggaggaatgtaaccggaggtttctgtagggtttggtaaagcattgaacatggt  24251200                                                             <---------HSFC1(1)                                                             --------->HSFB2a(2)                                                      --------->HSFC1(2)                                                      --------->HSFB2a(1)         ----------->GT1                      ------>ZmHOX2a(2)      ----------->GT1        --------->DAG2                      <---------ARR11(3)   ---------->DOF2      ---------->DOF2                   <---------ANAC58     <---------HSFB2a(2) -------DDF1                            <---------ANAC58     --------->HSFC1(1) ----->ETT(2)                       ------->TEIL      <---------HSFB2a(1) ------ETT(2)<---------YAB1     <---------TOE2(3)     <---------HSFC1(2)   cgacattgaaaaggtattatcggagactgccattgatgtatttcttgatctacagaaatttctctagaaaagggtttaatcagtttgtgtgattttggag  24251300                                    <---------ANAC46                                    <---------ANAC58                                    <---------ANAC58                                  <---------ANAC46                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                        --------->CCA1(2)                       --------->ARR14(2)                       <---------ARR11(3)             --------->DAG2                              ---                       <---------ARR14(2)            ---------->DOF2                             <---                       --------->AGP1            <---------HSFB2a(2)                     --------->ANAC46                       --------->ARR11(3)        --------->HSFB2a(2)             <---------YAB1  ----                      --------->GLK1(1)        <---------AHL20(2)       <-----------GT1--------->ANAC46  <---------YAB1      <---------GLK1(1)      <-----------TBP    <----------DOF2 ------------>CBF <---   aagtatgagagatttgtgaatgagagatctgtggtgatgcgtagagtatttatagaaaagttagggcttttgtttttctagttacaattacacaactcgg  24251400           --------->DAG2          ---------->DOF2        <------ZmHOX2a(1)            ------>ZmHOX2a(1)          --------->GLK1(2)     --------------->AGL15       --------->ARR14(2)         <---------ICU4   ------>MYB83                  <---------ARR14(2)         --------->YAB1   -------->P----------->GT1  <---------ANAC58             --------->ICU4   ------>MYB46(1)            <---------ANAC46           --------->YAB1  ------>ZmHOX2a(1)           <---------ANAC58        --------->YAB1 ------>GLK1(1)          <------MYB46(1)            <---------AHL20(2)                  ----------->GT1 ------ARR14(2)          <---------ANAC46<-----------GT1 <---------ICU4                --------->DAG2 ----->ARR14(2)          <------MYB83<----------DOF2--------->AHL20(2)                ---------->DOF2 ------GLK1(2)          --------->MYB111(1) <----------DOF2<---------YAB1        ----------->GT1   attcctaccaggaaaaggaaacttatttggtggagtatccttttttctttgtgttttaataataataatctatctgagaaaaatggaaaaaagtagaatt  24251500                                                              ----------->GT1--------->LBD16                                                            <---------ARR11(3)                                                            --------->ARR11(3)                                                     ================HOX2a_HOX2a                                                     ===============HOX2a_HOX2a                                                     ============================HOX2a_HOX2a                                                     <------ZmHOX2a(1)      --------->ANAC55(2)                                               --------->DAG2 ------>ZmHOX2a(2)                                              ---------->DOF2<------ZmHOX2a(2)<---------MYB52(1)                                    <---------AHL20(2)     <---------GLK1(1)<---------ANAC55(2)                        --------->ANAC58   <----------ID1  --------->GLK1(1)----------->GT1                   --------->MYB59  --------->AHL20(2)   <------ZmHOX2a(1)------>ZmHOX2a(2)        <----------ID1  --------->ANAC58---------->DOF2  ========================HOX2a_HOX2a        -   tttctgtaaaacgacaatatttaggcacgaaaatcaaattaaaaaaggaaaagtaggaaggagatcgtaaatttgatcccgtaaattcgaagggtattag  24251600                                                                                               ------                                                                                               ------                                                                                               <-----             <---------At4g35610                                                               <-----             --------->At4g35610                                                           --------->ANAC58             ----------->RAV1(2)                     >>>>>>>>>WRKY18          <---------ARR14(2)         <-----------HVH21            <---------WRKY38(1)          --------->At5g28300     --------->ANAC58         <-----------TGA1             <---------WRKY12<---------TOE2(3)       --------->ARR14(2)        --------->YAB1               --------->WRKY18(1)   ----------->HVH21  <---------ARR11(3)   <---------KAN4(2)       <----------DOF2         <---------WOX13(1)         --------->ARR11(3)    < ---------->GT1            <---------DAG2        --------->ATHB12 ----------->GT1       --------->TOE1(2)   aagggtataatcgtcatctgccattgcctctttttcgaggtcaacatcggctcattgacgaatgacgactgtgaatagaagatactgatacgaacgaaac  24251700  Previous    Next  AGI:  At5g60180.1    Description:  APUM19 (ARABIDOPSIS PUMILIO 19); RNA binding. similar to APUM18 (ARABIDOPSIS PUMILIO 18), RNA binding [Arabidopsis thaliana] (TAIR:AT5G60110.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67257.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Pumilio RNA-binding region; (InterPro:IPR001313); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 24250250    to: 24251233    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version