Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->TOE2(3)                                                                         --------->YAB1                                                                    ------>ZmHOX2a(2)                                                                  <---------ARR14(3)                                                                  --------->ARR14(2)                                --------->ATHB12                  <---------ARR11(3)                               <---------YAB1                     <-----------ARR10                             <---------ANAC55(2)                  --------->ARR14(3) -------->ANAC58             --------->ANAC55(2)                  --------->ARR11(3) -------->ANAC58        <------MYB46(1)                           <---------ARR14(2) ---------->GT1     <------ZmHOX2a(1)                             <---------AGP1 ---->ANAC58    --------->TOE1(2)                --------->MYB46(3)<------ZmHOX2a(2) ---->ANAC58    --------->TOE2(2) <---------WOX13(1)             --------->RVE1(1) --->DOF2 --------->YAB1<------MYB83     --------->GLK1(2)    ---------->DOF2             ---------->DOF2   gcaagaaaaaaatcagaacataggataggttatgtgattggagaatcaagaacaaacaatagcataaagatcttaacataaaaacaagagtctaaagaag  24234800                                                                                             <-------                                                                                          --------->ARR11(3)                                               ---------->DOF2                            <---------ARR11(3)                                             <---------ZAT6                           ---------->DOF2                               --------->TOE2(3)                                  ----------->GT1                       <----------DOF2 <----------DOF2                           --------->DAG2              <---------ICU4   --------->TOE1(3)       ----------->GT1          ---------->DOF2------   aaacctctgttcatcatcttcacctctttgaaaccctaactcttttagtgaaagtgaaggtgaaaatggttcttgaaaatagaaaagtaaaagagctttg  24234900                 *TSS              <----------DOF2             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           <---------ARR14(2)                                                           ----------->TBP           <---------ARR11(3)          ==============================================================      ------>ZmHOX2a(2)                <---------DAG2                                 <--------------     <------ZmHOX2a(2)                 <---------------AGL15                          ---------------     <---------GLK1(1)                 --------------->AGL15                         ----------------     --------->GLK1(1)                 ==============================================================    <---------AGP1                  <-----------GT1                                  ----------------    --------->ARR14(2)          --------->ARR11(3)                                   <---------------    --------->ARR11(3)   <----------DOF2        --------->YAB1                       <---------------    <---------ARR14(2)  <---------ANAC58 <-----------TBP                             <---------------    <---------ARR11(3)  <---------ANAC58<----------DOF2                   --------->HSFB2a(2)-------- ---DOF2   --------->ARR14(2)   <---------ARR11(3)               <------------CBF    <--------------- ----->GT1 --------->ARR11(3)   <---------GLK1(2)              <---------ZAT14   <------------CBF   ttaatagatctccgatcttttggtttgctttagagattttgccttttgtagcataacacagagactgtattgtcttctaggcttattgctacaaatggaa  24235000 --------->AHL20(2)                                                                             ----- =MADS_MADS                                                                                     ===== -AGL15                                                                                  ------>MYB83 >AGL15            <----------DOF2               --------->ARR14(2)                    --------->AtMYB61 ->AGL2            <---------DAG2                <---------ARR14(2)                    <---------MYB59 ==MADS_MADS   <---------MYB111(1)            --------->MYB46(3)                      --------->MYB46(3) ->AGL3   --------->At4g35610               ------>MYB83 <---------AHL20(2)     <---------YAB1------>MYB46(1) --AGL2 ------->MYC4                        --------->MYB52(1)            --------->AHL20(1)<-------- --AGL3 <-------MYC3                        ------>MYB46(1)               <---------AHL20(1)--------- --AG   <-------MYC2                      <---------MYB59--------->AHL20(2)    <-----------GT1------>MYB83 --->GT1------->MYC2                     --------->DEAR3(2)            --------->AHL20(2)------>MYB46(1) --AGL1 ------->MYC3                    ------->TEIL<---------YAB1 ----------->GT1 ------>ZmHOX2a(1)<   aaataaaacatgtgctaactacttttacttcaatgctccatgaaccgaaccgatatgattttaatcaaaccgaaaaaatattatcctaaccaaaccaaac  24235100                                                                                    --------->TOE1(2)                                                                                    --------->TOE1(3)                                                                                    --------->TOE2(2)                                                                                   ----------->RAV1(2)                                                                              <---------ICU4                                                                              --------->YAB1                               <---------AHL20(2)   ------------>CBF         <---------ATHB51 ---------->DOF2              <---------AHL20(2)  ------>NtERF2          ------------>CBF ------------>AGL3 <---------AHL20(2)          <---------LBD16   <---------------AGL15 ================================================================================MADS_MADS -MYB59 <---------WRKY38(1)   --------->AHL20(2)<---------RAP2.6(2)--------->AHL20(2) >AtMYB61         --------->AHL20(2)      ---------->DOF2        <----------DOF2 <-----------GT1    < ---------ATHB12--------->GLK1(2)      <----------DOF2  <---------ATHB12--------->YAB1    <---------YAB1   caataaagggtgaacgagaatttaaaattcaaataaatgggctttaaagtccggcccaatcgatttgctttaaatgacaataataacctgagattataga  24235200                                                                --------->GLK1(2)                                                               --------->KAN4(2)                                                              --------->GLK1(1)                                                              --------->KAN4(1)                                                              <---------KAN4(1)                                                              --------->HSFB2a(1)                                                              <---------HSFB2a(1)                                                              <----------TaMYB80                                                              <---------GLK1(1)           <------ZmHOX2a(2)                                 --------->ARR11(3)          <---------ARR11(3)                                 <---------ARR14(2)          --------->ARR11(3)                                 <---------ARR11(3)          <---------ARR14(2)                                 ---------->TaMYB80          --------->ARR14(2)                                 --------->ARR14(2)        *TSS------>ZmHOX2a(2)                                <---------KAN4(2)    <------MYB46(1)                                        <------NtERF2    <---------MYB46(3)                                    --------->LBD16    <---------DEAR3(2)                                    <------NtERF2                       <------NtERF2    <------MYB83<----------DOF2                          <---------LBD16       <---------CCA1(2)  <---------MYB52(1)               <-----------GT1      <---------LBD16   ------->GAMYB  --------->MYB46(3) ---------HSFB2a(1)             <-----------GT1        ------>NtERF2     --------->MYB46(3)  --------   gaacgttggtccgatcttctttcaatttcaagtttttcaacctcttcccgcttacgaggccgggatattctatcaacagtcgtctcttccatcggccgaa  24235300                                                                                                =====                                                                                                -----                                                                                                =====                                                                                               <-----                                                                                           <---------GLK1(1)                                                                                           --------->GLK1(1)                                                                                          <---------ARR14(2)                     <---------GLK1(1)                                                  --------->LBD16                    <---------ARR14(2)                                                 <---------ANAC55(2)                    --------->ARR14(2)                                                 --------->ANAC55(2)                    --------->ARR11(3)                                                 <---------ANAC46                    <---------GLK1(2)                                              <---------GLK1(1)                   <------ZmHOX2a(1)         --------->ARR11(3)                    <---------ARR14(2)              ------>MYB46(1)                <---------ARR11(3)                    --------->ARR14(2)           --------->DEAR3(2)                <---------GLK1(2)                    ===================          <---------At5g28300               <---------RVE1(1)                     ===================         <-----------GT1                   ----------->ARR10              ------>MYB46(1) --------->ARR14(2)       <----------DOF2                 --------->LBD16         ----------->GT1    <------ZmHOX2a(1) - ->RAP2.6(2)  ------>MYB83     --------->REM1(1)       <---------ZAT6     ------>MYB83<---------LBD16   caatttccgatttaccgactaggattttcgcctacaacttccgaagagattttctcagtgtaagtttgaaaaaacctagctataggattccggatttcct  24235400        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      --------->ARR14(3)      --------->AGP1      <---------ARR14(3)                              --------->ARR11(3)      <---------AGP1                                  <---------ARR11(3)      <-----------ARR10                              --------->RVE1(1)      --------->ARR14(2)                             --------->GLK1(1)      --------->ARR11(3)                             --------->CCA1(1)      <---------ARR11(3)                             <---------GLK1(1)      <---------ARR14(2)                            <---------ARR11(3)     <---------CCA1(2)                              --------->ARR11(3)     <---------At4g35610                     ------>ZmHOX2a(2)                        <---------At4g35610    ----------->ARR10                       --------->GLK1(1)                         --------->At4g35610 <-----------HVH21                          <---------GLK1(1)                       <---------ANAC58 =============HOX2a_HOX2a                   <------ZmHOX2a(2)                   <---------WOX13(1) ->ZmHOX2a(1)     ---------->DOF2          --------->ARR14(2)                 --------->ATHB12     <- ==============HOX2a_HOX2a                 <---------ARR14(2)                <---------YAB1      <--- ----MYB59      --------->ANAC58           <---------ARR11(3)               --------->ARR11(3)   ---- =============HOX2a_HOX2a--------->GLK1(2) --------->ARR11(3)               <---------ARR11(3)<------ ==============HOX2a_HOX2a                <------ZmHOX2a(1)         <----------ID1  <---------ANAC58- -------->YAB1  --------->ANAC58        <---------TOE2(3) <---------LBD16  --------->YAB1     -------   aatcgtcagatcttgggctcgaaagagaagctagaaatggataaggatctcttagatatctctggagaagacgacgaagataattggcttctgaagaata  24235500                                                                         <---------CCA1(2)          -                                                                  =======================HOX2a_HOX2a-                                                                  ------>ZmHOX2a(2)                 -                                                                 ========================HOX2a_HOX2a<                                                                 <------ZmHOX2a(2)                 --                                                                --------->ARR11(3)                 <-                                                                <---------ARR14(2)                 <-                                                                --------->ARR14(2)                 <- --------------------WRI1                                       --------->AGP1                     -- -------ID1                  ----------->GT1                    <---------ARR11(3)                 -- ----->ANAC46            ---------->DOF2                        <---------AGP1          ------>NtERF2 ---ARR14(2)            <------ZmHOX2a(1)                      <---------CCA1(2)  ------>ZmHOX2a(1)<- -------->DEAR3(1)   --------->LBD16                    <---------ARR14(2)  <---------ANAC58  <------ -->ARR14(2)        --------->DEAR3(1)                  --------->ARR14(2)  <---------ANAC58  <------   cgccgaagaaaactaattcgagccgaggaaagagttatttgaaatgctcacctctccaaatccctagatctagtcgtatcgttcctactcggcctccttt  24235600 --------->LBD16 ---------------->AGL1 ---------------->AG -------------->AGL15 ---------------AGL15                            <---------YAB1 --------------->AG                        <-------TEIL ----------------AGL3                   --------->ZAT2 ----------------AG                     <---------ZAT2 ----------------AGL2               ------>ZmHOX2a(2) --------------->AGL1              <------ZmHOX2a(2)                                                - --------------->AGL2             <---------ARR14(2)                                            <---- ----------------AGL1             --------->ARR14(2)      <-----------GT1              --------->At4g35610 ----DOF2                      <---------HSFB2a(2)   <---------ICU4<---------MYB52(1)  <---------At4g35610 ---DAG2        <----------DOF2--------->HSFB2a(2)--------->YAB1   <----------DOF2    --------->GLK1(2)   ttccccaattggtaagcgcttcaatttctcgttctcgatccgagcttcgttctgataatttctctctccctttgttagagtgtttaagcatctgaattag  24235700  Previous    Next  AGI:  At5g60142.1    Description:  DNA binding. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT5G60130.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76392.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 24233406    to: 24234917    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60150.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO21780.1) Range:  from: 24235208    to: 24240592    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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