Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------ANAC46                                                              --------             --------->MYB52(1)                                                   ------>NtERF2            ----------->HVH21                                                    <---------bZIP60(1)        --------->GLK1(2)           --------->ARR14(2)                           --------->bZIP60(1)       <---------GLK1(2)            <---------ARR14(2)                           --------->ANAC58     ----------->ARR10            <---------HSFC1(2)          <---------YAB1     --------->ANAC58 --------->At4g35610              --------->HSFC1(2)        --------->YAB1       --------->ANAC46   < <---------At4g35610  ---------->DOF2 <---------DEAR3(1)   <---------YAB1     ----------->HVH21   ---   cggagatgagattcttgacggagaaaaagagagagaagggtctgcgataaacccttgtttgatcatcgttgatacttctcttgacgccattgaagaagta  24202500                                                                <<<<<<<<<<E2Fa                                                                <<<<<<<<<<E2Ff                                                                <<<<<<<<<<E2Fc                                                                <<<<<<<<<<E2Fe                                                                <<<<<<<<<<E2Fd                                                                <<<<<<<<<<E2Fb                                                               --------->LBD16                                                              <---------LBD16                                                             --------->LBD16                  -------                                                             <---------LBD16                  <------                                            >>>>>>>>>ARR1--------->ARR14(2)               --------->HSFB2a(2)                                           --------->ATHB12<---------LBD16                <---------HSFB2a(2)               <---------HSFB2a(2)        <---------YAB1<---------GLK1(1)     <---------HSFC1(2) --->GT1   <----------DOF2            <---------DAG2   <-----------ARR10      <---------HSFB2a(1) ---------GLK1(2)            ---------->DOF2>>>>>>>>>ARR2<---------ARR14(2)   --------->HSFB2a(1) ------>ICU4   --------->HSFB2a(2)    <----------DOF2 <---------GLK1(2)       --------->HSFC1(2) ----   aaaattctcaaaactttctcgagagcaaaaaaaaagaaaactttatgattgtaagagaatttccgcgggaaaattagcgaagtttcttcttactggaaat  24202600                                                                          <---------ANAC58                                                                       <----------DOF2---------->DOF2                                                                       <---------------AGL15                                                                      <---------------AGL15                                                                      --------------->AGL15                               --------->ARR11(3)                    ----------------->AGL1        --                               <---------ARR11(3)                    <-----------------AG      ------ -->GLK1(1)        --------->REM1(1)            --------->ANAC58     <-----------------AGL1    <----- ---GLK1(1)    --------->HSFC1(2)               --------->ANAC58   <-----------GT1   --------->AHL20(2) ----->TOE2(3) <---------HSFC1(2) <----------DOF2       <---------ANAC46  <---------ANAC58     <-----   ctcaaaaacagacaagaagcttcaacttaagaagaactttaagagaagacaagaaattgtgggaatttgtttcctttcttgggaaaataaaagagagtgg  24202700                  --------->ANAC46                  --------->ANAC58                <---------ALFIN1         --------->ARR14(2)         <---------GLK1(2)                                                    ------>ZmHOX2a(2)         <---------ARR14(2)                             --------->ANAC58    <---------ARR14(2)         <-----------ARR10                         --------->ARR14(2)  <----------DOF2     <-------TEIL --------->ANAC58                 --------->GLK1(2)<------ZmHOX2a(1) -------->DOF2  ----------->RAV1(1)            --------->YAB1       =================HOX2a_HOX2a --->ZAT18     --------->ANAC46       --------->ALFIN1  --------->ANAC58    --------->ARR14(2) ----ZAT18<---------GLK1(1)         <-----------RAV1(1) --------->ANAC46    <---------AGP1 ----ZAT14--------->GLK1(1)      ------->TEIL--------->GLK1(2)  ---------->DOF2----------->GT1 <-----   acaaagatgcagatttccccacacaagaagaaatgaaactgtgggagaatcagaatccaagaaaatgaaaggactttggatctgtgaatataaaactaca  24202800                                                                       <----------DOF2                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                 <------------CBF                                                       *TSS<---------WOX13(1)                                               ------>ZmHOX2a(1)<---------ICU4                                               <----------DOF2  --------->ATHB12                                              --------->TOE2(3)<---------YAB1       <---------GLK1(2) ----YAB1                             --------->AHL20(2)  <------------CBF   ------>NtERF2   attgcaatggacagtgagagaaaaatgaagacttgtttttttatatatcctttacagatagattgatcattgcctttgcctccataggttctctaaactt  24202900                                                                            --------->MYB52(1)                                                            --------->WRKY18(1)----------->GT1                            --------->LBD16             <---------ZAT18    <---------ARR14(2)                          <---------LBD16          <------ZmHOX2a(2)       --------->ARR14(2)                        ==============================HOX2a_HOX2a         --------->MYB46(3)                        ==================================HOX2a_HOX2a    --------->ANAC58                        ------>ZmHOX2a(1)         <---------ARR14(2)     --------->ANAC58               --------->ATHB12                   --------->ARR14(2) --------->ANAC58       <-------- ---------->DOF2<------------CBF               ------>ZmHOX2a(2)     --------->ANAC58---------->DOF2   tcacaaagaaattagacttattggtccttccggtttgattttttgttgatcggatcagtccggtctagcccgagcaagaaccggtttaaaagtatttcca  24203000                                                                   --------->ZAT14                                                                   <---------ZAT14                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                             --------->ANAC46                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------->MYC3                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <-------MYC3                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <-------TEIL                               --------->ARR11(3)     <---------SPL7      <---------ANAC46                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ANAC58                       --------->AHL20(2)    xxxxxxxxxxxxxxxx>smallRNA(s)     <      <---------ANAC58                  --------->AHL20(2)  <---------LBD16----------->HVH21  -------    --------->ZAT18                    --------->AHL20(1)   ------->GAMYB --------->LBD16    <-------   --------->ALFIN1                    <---------AHL20(1)<-----------GT1--------->LBD16<---------AHL20(2) <---------ANAC46             <---------WOX13(1)    <---------ARR11(3)  <---------LBD16--------->AHL20(2) <---------ANAC58        <---------At4g35610<---------AHL20(2)<---------LBD16      <---------AHL20(2) <---------ANAC58        --------->At4g35610--------->AHL20(2)--------->LBD16     --------->AHL20(2)- ---GT1<---------SPL7 ---------->DOF2 --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)---------   tttgagtggggtacacatggatttgaaagctgatggacaaatatatataaattagattttaacccgcggtataccgcgggacgatttatttttttaaagt  24203100                                                                                             xxxxxxxx                                                                                            <xxxxxxxx                                                                                          <xxxxxxxxxx                                                                                     ------->TEIL                                                                                     --------->GLK1(2)                                                        --------->YAB1               --------->ARR14(2)                                   --------->AHL20(2)   -------->HAHB4              xxxxxxxxxxxxxxxxx                                  <---------AHL20(1)    <---------ICU4              xxxxxxxxxxxxxxxx>smallRNA(i)                                  <---------AHL20(2)    <--------ATHB1              <xxxxxxxxxxxxxxxxsmallRNA(i)                                  --------->AHL20(1)    --------->ATHB51          --------->ANAC58                           <---------YAB1              <---------YAB1             --------->ANAC46                        <---------YAB1                 --------->ICU4   --------->ANAC58 <xxxxxxxxxxx       --------->AHL20(2) <---------AHL20(2)           <---------AHL20(2)         --------->ANAC58 --  <---------AHL20(1) <---------AHL20(1)                <---------ATHB51 --------->ZAT6   <xxxxxxxxxxx  --------->AHL20(1) --------->AHL20(1)          <---------ZAT6         --------->ANAC58<xxxxxxxxxxxx ---------AHL20(1)   --------->AHL20(2)        <---------At5g28300    --------->MYB52(1)<xxxxxxxxxxxx ---->GT1            <---------AHL20(2)--------->AHL20(2)             <-----------GT1<---------ARR14(2) --TOE2(3)   <-----------GT1   --------->AHL20(2)----------->GT1   --------->ANAC55(2) <xxxxxxxxxxxxx -------->AHL20(1)  --------->AHL20(2) <---------AHL20(2)          <---------ANAC55(2)<xxxxxxxxxxxxxx ->DOF2<---------AHL20(2) --------->AHL20(2)  <-----------GT1<---------YAB1     --------->ZAT6  xxxxx   aatatatattaaaatttacaaattttatttttataaaatatttatattttacagttaataattgttattaagtaacgctataacacgaatccatgagaca  24203200                                                                                         <xxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   --------->MYB46(3)                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <-------TEIL <--------                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            <XXXXXXXXXXXXXXXXXXXXMIR862-3P                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i2)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(i)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(i)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxx>smallRNA(si3)                               <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxsmallRNA(i)                               <---------AHL20(1)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->GT1                                  --------->AHL20(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxsmallRNA(s)            --------->AHL20(2) --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxsmallRNA(i)             <---------AHL20(2) <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxsmallRNA(s)            --------->YAB1   --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxsmallRNA(i)    <-----------GT1           --------->YAB1   <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxsmallRNA(i)  <---------REM1(1)         --------->YAB1   <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->AHL20(2)--------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   attgttaaaaaactgaagttgtaacccctattaaaacagcatattaataatattttaaaattttataaatattgattcaaatacatccaccatataaccc  24203300   ------>ZmHOX2a(1)  --------->TOE2(3) xxxxxxsmallRNA(si3) xxxxxxxsmallRNA(s2) xxxxxxxxxsmallRNA(i2) xxxxxxsmallRNA(se3) xxxxxxsmallRNA(le3) xxxxxxsmallRNA(si3) xxxxxxsmallRNA(fl3) xxxxxxsmallRNA(si3) xxxxxxsmallRNA(le3) xxxxx>smallRNA(fl3) xxxxx>smallRNA(le3) xxxxx>smallRNA(se3)                     <---------MYB52(1) xxxxxxsmallRNA(se3)                    --------->LBD16 xxxxsmallRNA(si3)                     --------->ANAC55(2) xxx>smallRNA(s2)                      <---------ANAC55(2) xxxxsmallRNA(se3)                     <---------ANAC46 xxxsmallRNA(si3)                      --------->O2 xxxsmallRNA(le3)                      <---------O2                                     --------->AHL20(2) xxxsmallRNA(se3)                    ------------->DYT1                            <---------YAB1 ---GT1 --------->AHL20(2)           --------->SPL7                              --------->AHL20(2) x>smallRNA(fl3)                   <-----------HVH21  <---------TOE2(3)          --------->ATHB51 xsmallRNA(se3)                   --------->ANAC46   ---------->DOF2             <---------AHL20(2) xsmallRNA(si3)               xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ICU4 <---------ICU4 xsmallRNA(se3)              xxxxxxxxxxxxxxxx>smallRNA(i) ----------->GT1   <---------TOE2(3)   ----- xsmallRNA(fl3)             <----------DOF2   <---------AHL20(2)         --------->AHL20(2)   <------   aattcctaaataaaacatgttctataatttctttatccgtcccgtgatttttttttaaagtagtaatttttaaaatttaagaattattttttatatataa  24203400  Previous    Next  AGI:  At5g60050.1    Description:  PRLI-interacting factor-related. similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT1G63850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21757.1); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 24200793    to: 24202855    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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