Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <----------DOF2                            <------NtERF2                           <---------RAP2.6(3)                           ------>NtERF2                   <---------HSFC1(2)                   --------->HSFC1(2)       <---------ARR14(2) --------->DEAR3(1)       --------->GLK1(2)<---------At4g35610       --------->ARR14(2) --------->RAP2.6(2)                         ----------->HVH21      <---------ARR14(1)--------->At4g35610                         --------->LBD16               --- ------ZmHOX2a(1) --------->GLK1(2)          <------MYB46(1)        <---------At4g35610         ----- ----->At4g35610  <-----------ARR10          <---------MYB46(3)   <---------LBD16 <---------At4g35610 ---YAB1   --------->LBD16--------->RAP2.3(2)<------MYB83 --------->MYB46(3)      --------->At4g35610   gaggaagcgaatccagagagaagcttagccgcctttgagagggagattggttcagcactaacaactcttccggtgacagtcttcatcggaagaagctcga  24190200         <------NtERF2        ------>NtERF2       --------->ANAC58    --------->ATERF1(1)                                                                            <-    <------NtERF2                                                                                  <-   <-----------HVH21                              ----------->HVH21                   ---------->DOF2  <---------DEAR3(1)                         ---------->DOF2                        --------->ANAC46 *TSS  --------->ANAC58                 --------------->AGL15    --------->ICU4     --------->ANAC58 ------>DAG2                    <---------ZAT18 <---------At4g35610                 --------->ANAC58 ----->DOF2                     ------------>CBF--------->At4g35610         --------->ANAC46       <-   aaggtcgtcgcgcctctctaactacacaaattagggcaatttcccctaaaagctgacaactttcgaaataagtagaaaacacaactacgaaagtacccct  24190300                                                           --------->AHL20(2)                                                          --------->AHL20(2) --------ANAC46                            ----------->RAV1(1)    ------------------------>ANAC81 --------ANAC58                --------->YAB1           --------->YAB1  --------->MYB52(1) --------ANAC58               <---------YAB1  ---------->DOF2   ---------->DOF2    ---------->DOF2   tgcttgtttttttttttctcacaagtgaacatatcatagatgggccaacaaagcccaaaaataaaaaaaagcccaaacagacaaacaaagcccttccctg  24190400                                                                             --------->AHL20(2)                                                                          ------>MYB46(1)                                                                          ------>MYB83                                                                        <---------MYB59                                                                    ----------->HVH21                                                                  --------->ANAC55(2)                                                                  <---------O2                       <---------AHL20(2)                         <---------ANAC55(2)               -                      --------->AHL20(2)                      --------->ARR11(3)                   <-                  --------->ARR11(3)                         --------->RVE1(1)            --------->AHL20(1)                 <------ZmHOX2a(1)                       --------->AHL20(2)  <---------AHL20(2)    <-               <---------TOE2(3)                 ----------->GT1  --------->O2            --------->ARR11(3)             ---------->DOF2                    <---------YAB1<---------ARR11(3)     <---------TOE2(3)   <----------DOF2<---------ARR11(3)         <---------YAB1  --------->CCA1(1) <---------TOE2(3)   <-   ttttccttttgtttttaaaggatattaaatataaaaaaactcaagagattatagttatataaaatatctcgtgacctaattaatgttaagaatatatagc  24190500                         ------>MYB83                       ------->GAMYB                      --------->MYB46(3)                     -------->P          --------->ZAT18------>MYB46(1)     ---------->DOF2--------->WOX13(1)                                      <----------DOF2 -------->LBD16    <---------WRKY12                               ---------->ID1    <-----------GT1 --------ANAC58  <-----------HVH21                               <------------------------ANAC81 --------ANAC46  --------->TOE2(3)                       <------MYB83 <XXXXXXXXXXXXXXXXXXXXXMIR855 <- --------ANAC58 --------->ANAC46<-----------HVH21        <------MYB46(1) <-----------GT1       <-----   tccgtggcaaagtgttctacgtcaaccagcctaaggtcacgagttcgattaccaaggctaggttttttgtttttttttctttgtttttgctctctccttg  24190600                             *TSS  <---------ZAT2                          <---------ANAC58                       ------>MYB83                          <---------ANAC58                       ------>MYB46(1)                       <---------MYB52(1)                      --------->AtMYB61                   ===========================RAV   --------->TOE1(3)                    --------->At5g28300                   ----------->RAV1(2)<---------At4g35610     --------->ZAT2          <---------At5g28300                  --------->LBD16  --------->At4g35610       ------>MYB83--------->DEAR3(1) ---------                  ------>NtERF2    <---------At4g35610       ------>MYB46(1)         <-----------GT1 -----ZmHOX2a(2) --------->ANAC46  --------->ZAT2   --------->TOE2(3)  <---------At5g28300<---------MYB52(1) ----TOE1(2)    <---------LBD16   <-----------RAV1(1)       <---------ALFIN1    <----------DOF2   gatcatccatctctatctcccgcctgttacttagctctgctgcttcttcttaaaccctaaacccaccttccttcaccgtcgtctttttcaccgtaagttg  24190700                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                       <---------AHL20(2)                                                                                      <---------AHL20(1)                                                                                      <---------AHL20(2)                    <---------At5g28300                                               --------->AHL20(2)       ------>ZmHOX2a(2)                    --------->ANAC46                 <---------LBD16  ------- >MYB52(2)         <-----------GT1         --------->SPL7         <---------MYB52(1) --------->ICU4   attcttcgatcggtctcgattttactgtgttttttttgtttctcttacgccgattcaaaacttaagtcgtttttttttttctgggtaattttttttgtag  24190800                                                                  <------MYB83                                                                  <------MYB46(1)                                                              <-----------RAV1(1) --------DOF2                                                --------->ARR11(3) ------ANAC58                                                <---------ARR11(3) ------ANAC58                                        --------->REM1(1) ------>ZmHOX2a(1)<----------DOF2 --->ID1        <----------ID1                     <---------ALFIN1 ---------->ID1------->TEIL    <--   cttttgtttgtagagatggagacgaagatggaaattgaattcactaagaagccctacatcgaagatgttggtcctcttaaaatgtatgttctttcagttt  24190900                                                                           <---------ICU4                                                              --------->ZAT2                                                              <---------ZAT2                   <---------MYB46(3)                      <---------At4g35610                 <---------MYB52(1)             --------->ANAC58          <---------YAB1            <-----------GT1                     --------->ANAC58    <------ZmHOX2a(2)       ----------->GT1                         --------->ZAT18<---------At4g35610                <---  --------->At4g35610                          --------->ZAT14--------->At4g35610            --------  <---------At4g35610                          <---------ZAT18----------->RAV1(2)     <---------AHL20(2) ---------GT1  --------->ATHB12 <---------AHL20(2)    <----------DOF2--------->YAB1  --------->AHL20(2)   tttctgctcaagttaaaccattggttctattgatataatttttctcaagtacgctccttttagcagctggatcatactcattgtgcataaaatttgtttc  24191000                            --------->ZAT2                <---------AHL20(2)                --------->AHL20(2)             <---------ANAC58               <---------AHL20(2)              <---------ANAC46                        <---------At4g35610               --------->AHL20(2)              <---------ANAC58                        --------->At4g35610               <---------AHL20(1)         --------->ARR14(2)                    --------->ARR14(2)      <---------TOE2(3)     <---------ZAT2<---------ARR14(2)<----------DOF2     <---------GLK1(2) -------DOF2   --------->AHL20(1)    >>>>>>>>>SARD1   --------->ZAT14           <---------ARR14(2) -->ID1    <---------AHL20(2)        >>>>>>>>>CBP60g  <---------ZAT14     ----------->HVH21     <----   tttttgctaatgtataatttatttgttccaagctctgaaatttggatttgggtgtctgaactcttttgtcaactagatgacatattctctgctaaatgct  24191100  Previous    Next  AGI:  At5g60030.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75335.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66187.1) Range:  from: 24189308    to: 24190201    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60040.1    Description:  NRPC1 (nuclear RNA polymerase C 1); DNA binding / DNA-directed RNA polymerase. similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G35800.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ78080.1); similar to hypothetical protein OsI_015892 [Oryza sativa (indica cultivar-group)] (GB:EAY94659.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21755.1); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain R Range:  from: 24190629    to: 24200867    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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