Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <<<<<<<<<TBF1         xxxxxxxxxxxxxxxx>smallRNA(i)       ---------->ID1  <<<<<<<<<TBF1      <------------------------ANAC81     <-----------RAV1(1)   <----------DOF2  <<<<<<<<<TBF1 <----------DOF2                  <---------At4g35610             == ---ARR11(3)   <------------------------ANAC81                     --------->At4g35610             -- -->ARR11(3)  <<<<<<<<<TBF1    ------>ZmHOX2a(1)           <----------DOF2             <---------DAG2   ttcgtctttgttgttcttcttcttcttcttctccttctttctctcccttcgctcttcgctcctttgctctgcttccaacttctcgttcaccttctcatca  24189800                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                             ------->TEIL                                                                                             --------                                                                                             <-------                                                                                        <---------DOF5.7(2)                                                                                        --------->MYB52(1)                                                                                      --------->DOF5.7(2)           <----------DOF2                       --------->YAB1                      --------->LBD16   ----------->RAV1(2)                           --------->TOE2(3)           <-----------------AGL1--   --------->At4g35610                         -------->P               --------->ZAT2<---------MYB52(1)  <---------ARR11(3)                           ------>MYB46(1)          --------->At4g35610  <------- ==============RAV                     <---------ANAC55(2)              <---------At4g35610 <-------- --------->RAV1(1)         <----------DOF2     ------>MYB83     <---------ALFIN1   <---------LBD16 <-   acaacatctgcgtctttgctcttcttcatctttttctcatcacgttccctaccataaactgattccacactcacagcttcactattccggtaacgaatct  24189900         <---------ARR14(2)         --------->ARR14(2)  --------->MYB46(3)  --------->SPL7  --------->DEAR3(2) ---HSFC1(2) ---HSFB2a(1) -->HSFC1(2) -->HSFB2a(1) --ARR11(1) ->GLK1(2) ->ARR14(2)                                                                           <---------ANAC58 ----ARR10                 --------->At4g35610                                        <---------ANAC58 --------->HVH21           <---------At4g35610      <---------ANAC58                 --------->ZAT2 --ARR14(2)        --------->YAB1        <---------At4g35610  <-------GAMYB    --------->MYB52(1) -ARR14(1)   --------->TOE2(3)     <----------DOF2  <---------ANAC58           <-----------HVH21----- --------ETT(1)<<<<<<<<<WRKY18   <---------DAG2 <----------DOF2<---------MYB52(1)    <---------ZAT2   tccgaccgtcgaattcgtcaatgacattccgctcactctttgcatcggagctttgcttcgtctccgttgatttagtctccctatcggagcttggcttcgt  24190000                                                                   --------->ZAT18                                                                  --------->ANAC58                                                               <---------SPL7                    ----                                                            <------NtERF2                     <------                                                            <---------------------WRI1 ------>NtERF2<                                                          --------->DEAR3(1)          --------->ANAC58                                                         <---------LBD16              --------->RAP2.3(2)         <-----------GT1               --------->ZAT14 <---------DEAR3(1)             --------->ANAC58        <---------AHL20(2)    --------->AHL20(2)    --------->ATERF1(1) --------->MYB52(1) --------->ICU4       --------->AHL20(2)     <---------AHL20(2)  <---------DEAR3(1)  <---------MYB52(2)<------NtERF2 <----------DOF2      <---------ARR14(2)      --------->At4g35610 --------->ANAC58   --------->ATERF1(1) --------------------->WRI1 <----------DOF2   <---------At4g35610<-------TEIL        --------->RAP2.3(1) ----->ID1            --------->ARR14(2)      <------NtERF2--------->LBD16          <---------ATERF1(1)   ctcctttgatttaatctccctgtggaaactctttaattcagtgaaggcagcggaggctcgccggaggtacgcactaacgtcttgagaggcgccattatca  24190100                              <----------DOF2                            <------NtERF2                           ------>NtERF2                           <---------RAP2.6(3)                   --------->HSFC1(2)                   <---------HSFC1(2)       <---------ARR14(2) --------->RAP2.3(2)       --------->GLK1(2)<---------At4g35610       --------->ARR14(2) --------->RAP2.6(2)                         ----------->HVH21      <---------ARR14(1)--------->At4g35610                         <---------At4g35610           --- ----->At4g35610  <-----------ARR10          <------MYB83 --------->MYB46(3)      <---------At4g35610 ---YAB1   --------->LBD16--------->DEAR3(1) <------MYB46(1)        --------->LBD16             ----- ------ZmHOX2a(1) --------->GLK1(2)          <---------MYB46(3)   <---------LBD16 --------->At4g35610   gaggaagcgaatccagagagaagcttagccgcctttgagagggagattggttcagcactaacaactcttccggtgacagtcttcatcggaagaagctcga  24190200         <------NtERF2        ------>NtERF2       --------->ANAC58    --------->ATERF1(1)                                                                            <-    <------NtERF2                                                                                  <-   <-----------HVH21                              ----------->HVH21                   ---------->DOF2  <---------DEAR3(1)                         ---------->DOF2                        --------->ANAC58 *TSS  --------->ANAC58                 --------------->AGL15    --------->ICU4     --------->ANAC46 ------>DAG2                    <---------ZAT18 --------->At4g35610                 --------->ANAC58 ----->DOF2                     ------------>CBF<---------At4g35610         --------->ANAC46       <-   aaggtcgtcgcgcctctctaactacacaaattagggcaatttcccctaaaagctgacaactttcgaaataagtagaaaacacaactacgaaagtacccct  24190300                                                           --------->AHL20(2)                                                          --------->AHL20(2) --------ANAC58                            ----------->RAV1(1)    ------------------------>ANAC81 --------ANAC46                --------->YAB1           --------->YAB1  --------->MYB52(1) --------ANAC58               <---------YAB1  ---------->DOF2   ---------->DOF2    ---------->DOF2   tgcttgtttttttttttctcacaagtgaacatatcatagatgggccaacaaagcccaaaaataaaaaaaagcccaaacagacaaacaaagcccttccctg  24190400                                                                             <---------AHL20(2)                                                                          ------>MYB46(1)                                                                          ------>MYB83                                                                        <---------MYB59                                                                    ----------->HVH21                                                                  --------->O2                                                                  <---------O2                       <---------AHL20(2)                         --------->ANAC55(2)               -                      --------->AHL20(2)                      <---------ARR11(3)                   <-                  --------->ARR11(3)                         --------->CCA1(1)            --------->AHL20(1)                 <------ZmHOX2a(1)                       --------->AHL20(2)  --------->AHL20(2)    <-               <---------TOE2(3)                 ----------->GT1  <---------ANAC55(2)     --------->ARR11(3)             ---------->DOF2                    <---------YAB1--------->ARR11(3)     <---------TOE2(3)   <----------DOF2<---------ARR11(3)         <---------YAB1  --------->RVE1(1) <---------TOE2(3)   <-   ttttccttttgtttttaaaggatattaaatataaaaaaactcaagagattatagttatataaaatatctcgtgacctaattaatgttaagaatatatagc  24190500                         ------>MYB83                       ------->GAMYB                      --------->MYB46(3)                     -------->P          --------->ZAT18------>MYB46(1)     ---------->DOF2--------->WOX13(1)                                      <----------DOF2 -------->LBD16    <---------WRKY12                               ---------->ID1    <-----------GT1 --------ANAC58  --------->TOE2(3)                               <------------------------ANAC81 --------ANAC58  <-----------HVH21                       <------MYB83 <XXXXXXXXXXXXXXXXXXXXXMIR855 <- --------ANAC46 --------->ANAC46<-----------HVH21        <------MYB46(1) <-----------GT1       <-----   tccgtggcaaagtgttctacgtcaaccagcctaaggtcacgagttcgattaccaaggctaggttttttgtttttttttctttgtttttgctctctccttg  24190600                             *TSS  --------->ZAT2                          <---------ANAC58                       ------>MYB46(1)                          <---------ANAC58                       ------>MYB83                       <---------MYB52(1)                      --------->AtMYB61                   ===========================RAV   --------->TOE2(3)                    --------->At5g28300                   ----------->RAV1(2)<---------At4g35610     --------->ZAT2          <---------At5g28300                  --------->LBD16  <---------ZAT2   --------->TOE1(3)  <---------At5g28300<---------MYB52(1)                  ------>NtERF2    <---------At4g35610       ------>MYB46(1)         <-----------GT1 -----ZmHOX2a(2) --------->ANAC46  --------->At4g35610       ------>MYB83--------->DEAR3(1) --------- ----TOE1(2)    <---------LBD16   <-----------RAV1(1)       <---------ALFIN1    <----------DOF2   gatcatccatctctatctcccgcctgttacttagctctgctgcttcttcttaaaccctaaacccaccttccttcaccgtcgtctttttcaccgtaagttg  24190700  Previous    Next  AGI:  At5g60030.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75335.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66187.1) Range:  from: 24189308    to: 24190201    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60040.1    Description:  NRPC1 (nuclear RNA polymerase C 1); DNA binding / DNA-directed RNA polymerase. similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G35800.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ78080.1); similar to hypothetical protein OsI_015892 [Oryza sativa (indica cultivar-group)] (GB:EAY94659.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21755.1); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain R Range:  from: 24190629    to: 24200867    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version