Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                             --------->GLK1(1)                                             <---------GLK1(1)                                            <---------ARR14(2)                                            --------->ARR14(3)                           --------->LBD16                                            <---------AGP1                           --------->GLK1(2)                                            --------->AGP1                           --------->ARR14(2)                                            --------->ARR14(2)                    --------->DEAR3(1)                                            <---------ARR11(3)                 ------->GAMYB                                    --------->LBD16                            --------->DEAR3(1)                                   <---------HSFC1(1)                         --------->MYB46(3)                                   --------->HSFC1(1)                         --------->DEAR3(2)                                   --------->HSFB2a(2)                    <---------WOX13(1)                                   <---------HSFB2a(2)    --------->ARR14(2) <---------At5g28300         ------>MYB83             ----------------->AGL3  <---------ARR14(2)--------->MYB52(1)       <---------MYB59            ----------------->AGL2  --------->GLK1(2) <-----------GT1         - >REM1(1)------>MYB46(1)<---------CCA1(2)   --------->ARR11(3)         <---------YAB1<---------ARR14(2)   actaaaatacctacattgaaattctcaaatctaatttccagaaacagatctccaaacacaaatctgaaaaaccctgattaaccgccgaatccgtagagag  24163600                                                                <---------ANAC46                 <---                                                               <---------DEAR3(1)                ----                                       ----------->HVH21    <---------ZAT2                <---------ANAC55(2)                                      <-----------HVH21     --------->ZAT2                <---------ANAC58                                     <---------MYB46(3)   <---------ZAT18                 --------->ANAC55(2)                                    <---------DREB2C(2)   --------->ZAT18               <-----------GT1                                    <---------ANAC58     <---------ANAC58          --------->ANAC58 -                                    <---------RAP2.6(2)  <---------ANAC46          --------->ANAC58 =   <---------ANAC58                 <---------ANAC58     <---------ANAC58  <---------bZIP60(1) <-----   <---------ANAC58           <-------TEIL         ------>ZmHOX2a(1)       --------->bZIP60(1) ------ ----->ZmHOX2a(1) <---------ANAC46  <---------ANAC46  ------>ZmHOX2a(1) ----------->HVH21 <---------ANAC58   tccttccttgcctcttgagagcgtagacaacatccatggcggtcacagtcttcctcctagcgtgctcggtgtaagtgacagcatcacgaattacgttctc  24163700                    <-------MYC2                    ------->MYC2                    <-------MYC4                    ------->MYC4                    <-------MYC3                    ------->MYC3                    ------->PIF5                    <-------PIF5                   <<<<<<<<<<HY5                   <xxxxxxxxxxxxxxxxsmallRNA(s)                   --------->TGA1a                   <---------TGA1a                   --------->O2                   <---------O2                   <--------ABF1                   --------->bZIP60(2)                   <---------ANAC55(2)               <-----------------PIF3(1)              --------->ANAC58              --------->ANAC46              --------->RAP2.6(2)              --------->ANAC58             --------->SPL7            <------ZmHOX2a(1)      =============HOX2a_HOX2a      =============================HOX2a_HOX2a      ------>ZmHOX2a(2)     <------ZmHOX2a(2)     ==============HOX2a_HOX2a     ==============================HOX2a_HOX2a    --------->ARR11(3)    <---------ARR14(3)    --------->ARR14(3)    <---------ARR11(3)    --------->AGP1 <<<<<<<<<<AtMYC2    --------->ARR14(2)    <---------AGP1 <<<<<<<<<<ABI5    <---------ARR14(2)       --------->TOE1(1)  ----------->ARR10--------->ANAC55(2) ------HSFB2a(2)  ------>NtERF2 ----->HSFB2a(2) <---------ALFIN1                                    --------->ANAC46     <---------ANAC58 --------->DOF2------>NtERF2------>ZmHOX2a(1)                 --------->AtMYB61           <---------ANAC58 ============================bZIP_DOF                 <---------WRKY18(1) --------->ARR14(2) ----HSFB2a(2)--------->bZIP60(1)       --------->ZAT18    <---------ALFIN1<---------ATHB12  <------MYB83 --->HSFB2a(2)<---------bZIP60(1)       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ARR14(2) <------MYB46(1)   gagaaagatcttgaggacgccacgtgtctcctcgtagatgagaccactaatacgcttgactccacctctacgagccaatcttcgaatggcaggcttggtg  24163800                              ----------->HVH21                              ----------->TGA1            <---------DAG2                            ------>ZmHOX2a(1)          --------->ANAC58                         ------>MYB46(1)               --------->ANAC58                         ------>MYB83              --------->ANAC46                      <---------HSFC1(2)       <---------DAG2              --------->ANAC46                      --------->HSFC1(2)       <----------DOF2       <----------DOF2 <---------ANAC46     --------->HSFB2a(1)   ------>ZmHOX2a(1)       <---------DAG2        --------->HSFB2a(2) <---------ANAC58     <---------HSFB2a(1)  <---------ALFIN1<----------DOF2 --------->MYB46(3) <---------ANAC58   <---------GLK1(2)    <---------ATERF1(1)     ------>ZmHOX2a(1)        <---------HSFB2a(2)   attccttggatgttgtctctcagaaccttcctgtgacgcttggctcctcctttacccaagccttttcctccctttccacgaccagacattttctcgagag  24163900                                                                  --------->ALFIN1                                                    --------->ARR14(2)                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                    *TSS        <---------ANAC58                                          <---------YAB1        <---------ANAC46              ---------->ID1          <---------ANAC58          <---------ANAC58             <-----------GT1          <---------ANAC58   --------->ATHB12   <-----------TBP        <----------DOF2       >>>>>>>>>TBF1         <---------ARR14(2)    <-----------TBP<----------DOF2    <---------GLK1(1)  <---------ANAC46<----------DOF2<------------CBF    --------->AHL20(2)       <-   aattagatttctttttttcgctactgtgtgaagaagaattgcttttgattttcagatattgactggacgtgtttgtttatatataagagggcttttgttt  24164000                                      ------------>CBF                                    --------->At4g35610                                    <---------At4g35610                                            --           <---------AHL20(2)   <---------MYB52(1)                                                 <-          --------->AHL20(2)   <-------GAMYB                              <------NtERF2        <-----    ------>MYB46(1)       --------->MYB46(3)                             <-----------HVH21    -------    ------>MYB83         --------->RAP2.6(3)                            --------->DEAR3(1)   --------  --------->AtMYB61     --------->MYB52(1)                     --------->bZIP60(1)        --------->MYB52(1)  ------->GAMYB        ----------->HVH21    <---------ANAC58   <---------bZIP60(1)  <---------AHL20(2) --------->MYB46(3)   <---------MYB52(2)    <---------ANAC58----------->HVH21 <---------WOX13(1)  <-- ----------GT1 <-----------GT1<---------MYB46(3)------------>CBF <---------YAB1     --------->AHL20(2)   tcaaccatccgatttaataacccatctaacggctgttaagctcaatccttgtcaatactgatatgacatgatagccgtcgattgattttaatcaacggtt  24164100           --------->LBD16         <---------LBD16   --------->YAB1                                                               <---------DAG2 ------->AHL20(2)                                                               <----------DOF2 --------AHL20(2)                                                          <---------ANAC58    <----- ----MYB52(1)     <---------ICU4                                 <---------AtLEC2              ------ -->At5g28300  --------->YAB1                          <-----------GT1     <---------ANAC58   <------ --->GT1 ------>ZmHOX2a(2)                     <----------DOF2   <---------ANAC58           <-------- -------YAB1  <---------YAB1           <-----------ARR10         <---------ANAC58   <---------AHL20(2)   attaattgtgatccgcatgataactacataagtgttcttcagagcttcgctttgtagttactagtttgcatgggctggcttactttttaatgggccggtt  24164200                                                                  <---------DEAR3(2)                                                                  --------->MYB55(2)                                                                  --------->MYB52(2)             <---                                                                  <---------MYB46(3)         <-------                                                                 <---------DEAR3(1)         <--------                                                               <-----------HVH21       <---------AHL20(2)                                                              <---------DEAR3(1)      <---------AHL20(2)                                                  ------->GAMYB------------>AtMYB77   --------->AHL20(2)                                             --------->At5g28300<------NtERF2         --------->AHL20(1)                                      <---------ANAC58      <-----------HVH21         <---------AHL20(1)                                      <---------ANAC58     --------->ANAC46       <---------AHL20(1)           ------>MYB46(1)        <-----------RAV1(2)     --------->SPL7          <---------AHL20(2)   ------>ZmHOX2a(2)            --------->ANAC58 <------------AtMYB77             --------->AHL20(2) ----ARR14(2)                   --------->ANAC46 <------------MYB.PH3(1)         --------->AHL20(2) --->ARR14(2)                   --------->ANAC58--------->At4g35610       ----------->GT1 <---------- -GAMYB  <---------MYB59     --------->ARR14(2) <---------At4g35610<-------GAMYB <---------AHL20(2) -DEAR3(1) ------>MYB83      <---------ARR14(2)--------->ARR14(2)<---------TOE2(2)--------->AHL20(1)   atggatcgaaaccaaacttctcttattttcgaatacgcaggcgtttcggtaactgcctcatacgtcgtcggttgcatagtaaaataaatttatttctttt  24164300                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                     --------->TOE1(3)                                                                                     <---------------AGL15                                                                                     --------->TOE2(3)                                                                                    -----------------                                                                                    -----------------                          <---------AHL20(2)           --------->GLK1(2)            <----------------    <----------DOF2       --------->AHL20(2)      --------->ZAT14        <---------AHL20(2)      ---- ---------------------ANAC81              ---------->DOF2               --------->AHL20(2)       <--- ---DOF2           ---------->ID1       <---------------AGL15       <---------MYB52(1)      --------- ----------------ANAC81 <-----------TBP =============================================================MADS_MADS -GT1           <---------AtMYB61       ------>ZmHOX2a(1)         ----------->GT1   <----------------   tcttctctttttttttttttggtcgtatttatatttcttctcctaaaatcggtgaagtatctaaaaacccgttatttaatgcttaaaccctaatcggaaa  24164400                                                                    <------NtERF2                                                                   <---------RAP2.6(3)                                                                   ------>NtERF2                                                                  >>>>>>>>>AtERF-5                                                                  --------->ANAC58                                                                  --------->ANAC46                                                                  --------->RAP2.6(2)                                                                  <---------ATERF1(2)                                                                  >>>>>>>>>>AtTINY2                                                                  >>>>>>>>>AtERF-2                                                                  --------->ATERF1(2)                                                                  >>>>>>>>>AtERF-4                                                                  --------->ANAC58                                                                  --------->DEAR3(1)                                                                  >>>>>>>>>AtERF-3                 <-                                                                  >>>>>>>>>AtERF-7                ---                                                                  --------->RAP2.3(2)             ---                                                                  --------->RRTF1(3)             <---                                                                  --------->RAP2.3(3)           <----                                                                  >>>>>>>>>AtERF-1              -----                                                                  --------->RRTF1(2)            <----                                                                 --------->ERF1                <-----                                                                 --------->RRTF1(1)            <-----                                                                 --------->DEAR3(2)            <-----     ------>NtERF2                                               --------->RAP2.3(1)           ------     --------->LBD16                                             --------->ATERF1(1)          <------    --------->ANAC58                                     >>>>>>>>>SPL1                        <------    --------->ANAC46                                     >>>>>>>>>SPL5                        -------   <---------LBD16                                       --------->SPL7                 <---------GLK1(1) ------>RVE1(1)                                          >>>>>>>>>SPL4            <--------P  ------- ------ARR11(3)                                       <---------ANAC58         --------->ALFIN1<----- ----->ARR11(3)                                       <---------ANAC55(2) ===================HOX2a_HOX2a >AGL1                                                <---------ANAC46    <------ZmHOX2a(2)  <------- >AGL2     --------->ZAT14                  ------>ZmHOX2a(2)   --------->At4g35610     --------->GLK1(1) -AG--------->ANAC58                      --------->ARR11(3)    <---------At4g35610   <------ZmHOX2a(1) ----->GLK1(2)                            <---------ARR11(3)    <---------ATERF1(1) --------->ANAC58 --------ARR10      ------>NtERF2   <---------HSFB2a(1)--------->LBD16   <-----------HVH21   -------- -->GT1    <---------ZAT14          <---------HSFC1(2)<---------ANAC58------>NtERF2 --------->ANAC58 -AGL1 <---------ALFIN1           <---------GLK1(2)  --------------->AtSPL3<-----------RAV1(2)<------   atctctccgccactgttctctccgactcactaatgggattcttcgatcttagcattccgtacaatgagccgccacgatcaggtggtaaggaaatcgccgg  24164500  Previous    Next  AGI:  At5g59970.1    Description:  histone H4. Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G53730.1); similar to hypothetical protein OsJ_028319 [Oryza sativa (japonica cultivar-group)] (GB:EAZ44836.1); similar to histone 4 [Elaeis guineensis] (GB:ABD62753.1); similar to histone H4 [Hyacinthus orientalis] (GB:AAT08725.1); contains InterPro domain Histone H4; (InterPro:IPR001951); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histon Range:  from: 24163401    to: 24163952    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g59980.1    Description:  RNase P subunit p30 family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO21745.1); contains InterPro domain RNase P subunit p30; (InterPro:IPR002738); contains InterPro domain Polymerase and histidinol phosphatase-like; (InterPro:IPR016195) Range:  from: 24164433    to: 24166953    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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