Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ------->PIF5                                                                                       <-------MYC2                                                                                       <-------MYC3                                                                                       ------->MYC2                                                                                       <-------PIF5                                                                                      <---------ANAC58                                                                                      --------->ALFIN1                                                                                      ===============                                                                                 --------->ATERF1(1)                                                                                 ===============MYC_MYB                                                                                 ---------->CDC5                                                                                 <------NtERF2                                                                                <---------ATERF1(1)                                                                                ------>NtERF2                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                     --------->HSFB2a(2)                                                                     <---------HSFB2a(2)--------->ALFIN1                              <---------HSFC1(1)                     <---------HSFC1(1)------->MYC3                              --------->HSFB2a(2)                 --------->ARR11(3)  --------->TGA1a                              <---------HSFB2a(2)                <---------CCA1(2)    <---------ANAC46                           --------->ARR11(3)                   --------->AHL20(1)    <---------TGA1a                          <---------CCA1(2)                     <---------AHL20(1)    <---------ANAC58                         <---------AHL20(2)                     <---------AHL20(2) --------->LBD16                        --------->YAB1                          <---------ARR11(3) <---------LBD16                       <---------YAB1                    --------->LBD16      --------->ATERF1(1)                     <---------ICU4                     <---------ANAC55(1)  <---------RAP2.3(1)                     --------->YAB1                     <---------ANAC58     <---------ATERF1(1)                    --------->ICU4                      <---------ANAC55(2) <---------RAP2.3(3)                    <---------YAB1                      --------->ANAC55(2) <---------RAP2.3(2)                  <--------HAHB4                        <---------ANAC58    <---------DEAR3(1)                 <---------YAB1                 <-----------GT1 --------->ARR11(3) ------>NtERF2    --------->YAB1--------->YAB1     --------->ALFIN1   <---------ANAC46   --------->RAP2.6(3)   aaccattcatatatgaagtattattattatatctagaaggtgttgattttaaactattccgtataatatatctagaagacggctccgcgcgtggggaatg  24119800                                   --------->bZIP60(1)                                   <---------bZIP60(1)                                   --------->O2                                   <---------O2                                                     -                                  ----------->STF1                                                ---                                  <-----------STF1                                              -----                                 <---------DOF5.7(2)                                       --------->TOE2(3)                                ----------->HVH21                                          <---------                                --------->WRKY12                                           ----------                               <---------WOX13(1)                                          <---------                              <-------GAMYB                                             <---------AHL20(1)                      <----------DOF2 <---------WRKY12                                  --------->ARR11(3)                      <---------------AGL15                                             <---------ARR11(3)                      <---------DAG2 --------->DOF5.7(2)                                --------->AHL20(1)                      --------------->AGL15  ========================================================                     <-----------------AGL2  --------------->AGL15                     --------->CCA1(1)                     <-----------------AGL3  <---------------AGL15                 <---------AHL20(2)                     ========================================MADS_MADS             --------->AHL20(2)           ----------->GT1   <---------MYB46(3) ---------->DOF2     <---------ANAC46   --------->RVE1(1) ================================bZIP_DOF--------->MYB46(3)       <---------ANAC46 --------->AHL20(1)   catcaaactcagagagtttaatagctttttttggttgacgtcaactactcaaaagagtttagtttttgatgtgtatatatccaaataaaatatctttaaa  24119900                                                     --------->MYB46(3)                                                    ------>MYB83                                                    ------>MYB46(1)                                         <---------ARR14(2)          <---------YAB1                 --------->ARR11(3)          --------->ICU4                 <---------GLK1(2)        <---------ICU4                   --------->ARR14(2)        --------->YAB1                   <---------ARR11(3)                                         <       --------->ICU4                   --------->HSFC1(2)                                          -     --------->YAB1                     <---------HSFC1(2)                                         <-   --------->AHL20(2)   --------->HSFB2a(2)         -------->P                                    <-- -------->AHL20(2)      <---------HSFC1(1)         --------->MYB52(1)                            ---- -------->GT1           --------->HSFC1(1)--------->GLK1(2)                                   <------ ----->DOF2--------->YAB1               <---------HSFB2a(1)                                  <------- ------AGL15  <---------AHL20(2)        --------->HSFB2a(1)                               --------->CCA1(2) ----->AGL15 <---------YAB1          <------ZmHOX2a(1)------->GAMYB <---------ANAC58    <---------At4g35610 -DOF2 <---------YAB1   <---------HSFB2a(2)      --------->MYB46(3) <---------ANAC58   --------->ANAC58 ======MADS_MADS       <---------ANAC46----------->ARR10         <----------DOF2       --------->ANAC58   aagaaaataataataataaatggtttcgagaaaacacgaggaagattctcatccaaccgaaacgactctttcgtttttagtagtctcttaagctacgcgg  24120000                                                                           <---------ALFIN1     --------->ARR14(2)                                         --------->TOE2(3)                   -     <---------ARR14(2)                                         --------->TOE1(3)                  <- ---------ANAC46                                       --------->ANAC46   ------>MYB46(1)      ------ -------->ETT(1)                       <---------At5g28300   <-----------GT1       <---------At4g35610 -----NtERF2                          <-----------GT1  --------->ANAC55(2)------>MYB83        <------ ---------HVH21              ---------->ID1            --------->ANAC58   -------->P  ------>NtERF2-- ----->ALFIN1               <-----------GT1  <---------CCA1(2)<---------TOE2(3)    --------->At4g35610 ---DEAR3(1)            <---------MYB52(1) <---------DAG2 ------->TEIL    --------->ZAT14     <------ --LBD16       --------->ANAC46    <----------DOF2     --------->ANAC58 <---------MYB59 <---------ALFIN1   tgtcgcaaatcgtgaccacataacccgttttttccttcttttaccccttatctttccacgtatttacgttaatacctacactcttcgctgccacttcctt  24120100                                    --------->ANAC55(1)                                    --------->TGA1a                                    --------->O2                            ==================bZIP_DOF         ----------------------->TaNAC69(2)      --------->ANAC58      <-----------HVH21----------------------->TaNAC69(2)     --------->ANAC46  <-----------HVH21         --------->ANAC46     --------->bZIP60(2)    <----------DOF2   <---------ZAT18     --------->ANAC58  <-----------TGA1       <---------WRKY38(1)     --------->ANAC58 --------->ANAC46  <----------DOF2 ------>MYB46(1)   --------->KAN4(2)<---------O2 --------->ANAC58              --------->MYB52(1) ------>MYB83     <----------TaMYB80<---------TGA1a                        ----------------->AGL1 -------->ANAC46  --------->KAN4(1) --------->ANAC58              ----------->TBP                 *TSS --------MYB55(2)---------->TaMYB80 --------->ANAC58            <---------------AGL15           <---- >ZmHOX2a(1)     <---------KAN4(2)  ===============bZIP_DOF     --------------->AGL15        -------- ---ANAC58       <---------ARR14(2) --------->ANAC46           ----------------->AGL3      <---------ALFIN1 ------->MYB46(3)--------->ARR14(2) --------->ANAC55(2)        <-----------------AGL3  --------->ANAC58 ---ANAC58    ----------->GT1     <---------ALFIN1             <-----------------AGL2  --------->ANAC58   acccaccaagtcacaagggtatattcgtcactttccacacgtctttggtccacacaaactcggtatctatatatagttcccaaacggacacgaacacatc  24120200                                                                                  --------->YAB1                                                                                  <---------ICU4                  ------>MYB46(1)                                                <---------YAB1                  ------>MYB83                                                 <---------ICU4                <---------MYB46(2)                                             --------->YAB1                --------->AtMYB61             <------ZmHOX2a(2)               <---------YAB1                <---------MYB111(2)          <---------ARR11(3)             --------->YAB1               --------->ANAC58              --------->ARR11(3)    <---------ANAC46               --------->ANAC58             <------ZmHOX2a(1)      <---------ANAC58    --------->At4g35610               --------->ANAC46  --------->ANAC46                  <---------ANAC58 --------->At4g35610 -----ICU4   --------->ANAC46    --------->ANAC58         <---------YAB1   <---------ATHB12      <--- ->ANAC46  --------->YAB1        --------->ANAC58         <---------AHL20(2)<---------ICU4       ----   atcacaactactatcacaccaaactcaaaaaacacaaaccacaagaggatcatttcattttttattgtttcgttttaatcatcatcatcagaagaaaaat  24120300                                        --------->ATERF1(1)                                        --------->RAP2.3(1)                                        <------NtERF2                                       <---------ORA47(2)                                       <---------RAP2.3(1)                                       ------>NtERF2                                       <---------ATERF1(1)                                       <---------DEAR4(2)                                       <---------ERF1                                      <---------RAP2.3(3)                                      <---------ANAC46                                      --------->DEAR3(1)                                      <---------RAP2.3(2)                                      <---------DEAR3(1)                                      <---------RRTF1(3)                                   --------->O2                                   ================================bZIP_DOF                                   <---------O2                                                 <----                                   --------->TGA1a                                        <---------DEAR3(1)                                   <---------TGA1a                                        --------->ALFIN1                                  <---------LBD16                                      <---------DREB2C(2)                           <---------MYB46(3)                                          <---------DEAR3(1)                          --------->ALFIN1                                           <---------DOF5.7(2)                         --------->At5g28300                                        --------->WRKY12                       <---------DEAR3(1)                                           ----------->HVH21              <------ZmHOX2a(2)   <---------At5g28300                               --------->WRKY38(1)            --------->GLK1(1)   ----------->HVH21                          --------->ANAC58 <------NtERF2 ------MYB46(3)     --------->ETT(2) <---------ABI4(1)            <---------ZAT6   --------->DOF5.7(2) ----->ATHB12--------->ARR11(3)<-----------HVH21        <----------DOF2    --------->ANAC58------>NtERF2   ggttgcgatatcggagatcaagtcgacggtggatgtcacggcggcgaattgtttgatgcttttatctagagttggacaagaaaacgttgacggtggcgat  24120400                                                                <---------At5g28300                                                               <---------WRKY38(1)                                                              ----------->HVH21                                                             <-----------HVH21                                                          <------ZmHOX2a(1)                       ------->MYC3               --------->ANAC46    <---------ANAC58            <--                       <-------MYC3               --------->ANAC58    <---------ANAC58       ------->GAMYB --ZmHOX2a(2)  ----------->GT1        <-------TEIL--------->ANAC58 <---------SPL7      --------->MYB52(1)   caaaaacgcgttttcacatgtaaaacgtgtttgaagcagtttcattcgttccaagccttaggaggtcaccgtgcgagtcacaagaagcctaacaacgacg  24120500                                                                  --------->ARR14(2)                                                 <---------------AGL15                                                <-----------------AGL3                        -------                                                ----------------->AGL1                        -------                                              ---------->ID1 <---------ZAT14                  <------           <---------WOX13(1)                <-----------HVH21    <---------ARR14(2)          <------    <---------SPL7                        <---------ANAC58  --------->ALFIN1      <----------DOF2   <---------ANAC58                <------NtERF2----------------->AGL3            ===================   <---------ANAC58               <-----------HVH21       <---------ANAC46     --------->ANAC58  ---------->ID1                 <---------DEAR3(1)       <---------ANAC58     --------->ANAC58     < --------DOF2         ----------->GT1     <---------ANAC58<---------ANAC58<----------ID1  <------ZmHOX2a(1)   ctttgtcgtctggattgatgaagaaggtgaaaacgtcgtcgcatccttgtcccatatgtggagtggagtttccgatgggacaagctttgggaggacacat  24120600                                        <-------GAMYB                                       --------->MYB55(2)                                       <---------MYB46(3)                                       <------MYB46(1)                                      <---------AtMYB61                                     <---------MYB52(1)                                    <-------GAMYB                                 <---------ANAC46                                 <---------ANAC58                     --------->At5g28300                                 <---------ANAC58                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                --------->ATERF1(1)               --------->MYB52(1)                                <------NtERF2                    --------->ZAT18                              <---------DEAR3(1)                --------->ATERF1(1)                              --------->ALFIN1                  --------->DEAR3(2)                              <---------RAP2.3(3)            --------->ATERF1(1)                           <-----------RAV1(1) <-------MYC2  <------NtERF2                         <---------ZAT2<------MYB83  <-----------RAV1(1)                         <---------At4g35610   <-------MYC3 --------->LBD16                         --------->At4g35610   ------->MYC2 <---------ATERF1(1) -->O2                   --------->ZAT2--------->MYB52(2) <---------LBD16 -->TGA1a              <---------DEAR3(1)     --------->ANAC46 <---------ATERF1(1) ---O2                <---------At4g35610     --------->ANAC58 --------->PCF2 ---TGA1a<------ZmHOX2a(1)<---------ANAC46    --------->ANAC58 ------>NtERF2 ===bZIP_DOF         <---------PCF2<------NtERF2   <----------DOF2<---------ALFIN1              ----- ------ZmHOX2a(1) --------->ALFIN1------>NtERF2------->MYC3--------->ETT(1)           --------->GLK1(1)   gaggagacacaggaacgagagtggggctgctggtggcgcgttggttacacgcgctttgttgccggagcccacggtgactacgttgaagaaatctagcagt  24120700  Previous    Next  AGI:  At5g59820.1    Description:  RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G46080.1); similar to C2H2-type zinc finger protein [Brassica napus] (GB:ABB52061.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 24120198    to: 24121013    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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