Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------------AGL15                                            --------------->AGL15                                          --------->ZAT2  --------->TOE2(3)                       <---------At4g35610 ------>TEIL                              --------->At4g35610 ------->P                                <---------ZAT2          <-----------GT1 >GT1           <---------YAB1   --------->YAB1       ---------->DOF2   tcaacctcgaaggggattatcaatttgtccaagaatcaaaacccagcttaatagagaaaagactaaattttcaagctcgaattcaattcaatttcagtaa  23995400                        ----------->GT1                        <---------ANAC55(2)                        --------->ANAC55(2)                    <-----------HVH21                    --------->ARR11(3)             <-----------ARR10                               ---------->DOF2 <---------ANAC58 <---------TOE2(3)  --------->DAG2     ----------->GT1        <---------GLK1(1) <---------ANAC58 <---------TOE1(3) ---------->DOF2   ---------->DOF2    <----------DOF2   tttccttgagtttcaaatctaaggtcatgtaacatgaataaagctacttctacagagaaagaaaaaagacagtacctttagatttctcagagtgctacta  23995500                                                      <---------At5g28300        <-------MYC3                                                      <---------DOF5.7(2)        ------->MYC3                    <----------DOF2        --------->ARR11(3)                  --------->LBD16                   <---------ANAC58   --------->TOE1(2)                        ------>NtERF2                   <---------ANAC58 <---------ICU4  --------->DOF5.7(2)      <---------LBD16              --------->YAB1    <---------YAB1      <---------MYB52(1)  --------->MYB46(3)             <---------YAB1   <-----------GT1     --------->ANAC46<------ZmHOX2a(1)                <-        --------->ANAC46   <---------ICU4  <---------ARR11(3)  <------ZmHOX2a(1)<---------ANAC46  ---   atctctctcttcgccattatagctttccaaaattacaataactacgatattcccgttaccgtagaggaggaacaacaactccgcgtgtgttttcgttttt  23995600                                                                       <------------MYB.PH3(1)                                                                     ------>MYB46(1)                                                                     ------>MYB83                                                                    ----------->HVH21                                                                    --------->MYB55(1)                         <---------At4g35610                       --------->AtMYB61                         --------->At4g35610                       <---------MYB111(1)              <-----------GT1                                      <---------MYB52(2)             <-----------GT1                                       <---------MYB46(2)          <---------ARR14(3)                                       <---------MYB111(2)          <---------ARR11(3)                                       <---------MYB59          <---------GLK1(2)                                       --------->ANAC46          <---------ARR14(2)                                    <---------ALFIN1          --------->ARR14(3)                                    --------->REM1(1)          --------->ARR11(3)                          <-----------GT1--------->MYB52(1)          <---          --------->ARR14(2)                    <---------TOE2(3) --------->ANAC58<---------ANAC58  < --------TOE1(2)         <---------ZAT2         <---------TOE2(2) --------->ANAC55(1)     <---------- ------------>AGL15      *TSS--------->DEAR3(1) <---------TOE1(2) --------->ANAC58<---------ANAC58  <   ctaggtttagaagattttccgatttgaagctccgtccaaaaaaacacacttaggtttaactggtctacacctaaccgattcaaaccgtgccaaattgatt  23995700                                                                            ------------>CBF                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                         ------>MYB83         ------>MYB83                                                    ------>MYB46(1)         ------>MYB46(1)                                               ------->GAMYB       <---------MYB59           <---------AHL20(2)                    --------->AtMYB61    <-----------GT1   <------------CBF      <---------AHL20(2)        --------->MYB46(3) ------AHL20(2)  <---------GLK1(2)          --------->AHL20(2)       ------>MYB46(1) ---------YAB1 <---------ATHB12  --------->AHL20(2)                  ------>MYB83          --------->ZAT2 --CBF <---------MYB46(2)    <---------AHL20(2)     <---------ICU4   -------->P            <---------At4g35610 ---------AHL20(2)--------->GLK1(2)       <-----------TBP       --------->GLK1(2)          --------->At4g35610   tttttattaccaaaccaaagattctattggtttaattttttggtatttatttgatcatgtctgaagaatccaaccaaatccaatctgaaaaacagctgaa  23995800                                                                         ------>ZmHOX2a(2)                                                                        --------->GLK1(1)                                                                       <---------ARR14(2)                                                                       <---------AGP1                                                                       <---------ARR11(3)                                                                       --------->ARR14(2)                                                                       --------->ARR11(3)                                                                       <-----------ARR10                                                                      <---------ARR14(1)                                                                      <---------CCA1(2)        ------                                                              --------->ANAC58       --------->At5g28300                                                              --------->ANAC58   --------->MYB52(1)             --------->ANAC58                                <---------LBD16    ----------->HVH21             --------->ANAC58                             --------->ZAT2<---------GLK1(1)    <-------         --------->ANAC58                     =================================HOX2a_HOX2a --------->ARR14(2)         --------->ANAC58               --------->ARR11(3)<---------At4g35610  --------->LBD16 ------       <<<<<<<<<WRKY18               <---------GLK1(2)    <---------ZAT2<------ZmHOX2a(2)  <---------ARR14(2)      --------->WRKY18(1)     ------------>CBF==================================HOX2a_HOX2a--------->GLK1(2)   --------->DAG2            <<<<<<<<<<<<<<<<<LFY         --------->At4g35610 --------->ANAC55(2)  ---------->DOF2       <------ZmHOX2a(1)     <------ZmHOX2a(1)<---------ZAT18--------->ANAC46<------   cataaaaagtcaaggaagcaacttgaggagaaaacaatggattatctaggaatcgacttgagctgcgcaatcggatctctccgtaacggtgagtttccgg  23995900                                                                                   ----------->GT1                                                                                   <---------MYB46(3)                                                                                   <------MYB46(1)                                                     --------->At4g35610           <------MYB83                                                  <---------At4g35610       ------>ZmHOX2a(1)                                               <-----------HVH21      --------->At4g35610   <---------GLK1(2)                          --------->O2  ----------->HVH21<-----------RAV1(2)    - >NtERF2                                      --------->ANAC46    <---------MYB52(1)<-------GAMYB <-- --LBD16                             <---------MYB52(1)<----------DOF2<---------At4g35610       ----- --->LBD16               ---------->DOF2     ------>ZmHOX2a(1)   <-------GAMYB   <--------P   <------ ---LBD16       ------>ZmHOX2a(1)   <-------GAMYB<---------DEAR3(1)  <---------TOE1(3)      ---------   cgaaagattgtcttcttcctctcatttcaaagctactcggttacttcctcgtcgctgcttcaatgaccgttaagcttcctcaggttggttaattcaatca  23996000       --------->YAB1      <---------ATHB12              <---------ZAT14    --------->WOX13(1)        --------->ARR11(3)  <---------ATHB12      ------->GAMYB -------->WOX13(1)      --------->TOE2(3)                            --------->YAB1 -------ATHB12          --------->TOE1(3)                           <---------YAB1 ---->WOX13(1)    <-----------GT1   --------->ZAT14             --------->ARR11(3)            ------- ---ATHB12   --------->YAB1   <---------ARR11(3)           <---------REM1(1)              <---------ZAT6 >WOX13(1)  <---------YAB1   <---------CCA1(2)          <-----------RAV1(1)               -----------   atcaatcaatcactatgattttacaaccctaatatctctaaactgaattgaacttctattgttgtagataatgaaaatcgtggacaacaagagtgtaaaa  23996100                                 <------MYB83                                <---------DAG2                                 ----------->GT1                             <----------DOF2                                 <---------MYB46(3)                       ------>MYB83<----------DOF2                                 <------MYB46(1)                          ------>MYB46(1)        <---------REM1(1)      <---------WOX13(1)                 ---------->DOF2   <---------At4g35610 --->DOF2             <----------DOF2               <---------ANAC58  <---------ARR11(3) >GT1<-----------RAV1(1)     --------->ATHB12       <---------ANAC58  --------->ARR11(3)   ggcctaagtgttgtagcatttgagcttgaagtgattggttacacaatctcacttgcttactgtcttaacaaagaccttcctttttcagcttttggtgaat  23996200                                                                                          <----------DOF2                                         <-----------GT1                          --------->ANAC58                                      ------->TEIL                                --------->ANAC46                                 <---------ANAC46                                 --------->ANAC58                                 <---------ANAC58                               ---------->DOF2                                 <---------ANAC58                              <---------WRKY38(1)             ------>ZmHOX2a(2)  <------NtERF2                                  <---------WRKY45      <----------DOF2         <---------RAP2.6(2)                              <---------WRKY12 <----------DOF2   <----------DOF2   <---------CCA1(2)                       <-----------HVH21   tagcttttcttttgatccaagctttaatcttggtggcttgtatctactatttctcacaacctctctctgtaacaacttgggtcaaagcaattctttattt  23996300  Previous    Next  AGI:  At5g59460.1    Description:  scarecrow-like transcription factor 11 (SCL11). similar to unnamed protein product [Vitis vinifera] (GB:CAO21628.1); contains domain PTHR13582 (PTHR13582) Range:  from: 23993949    to: 23995625    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g59470.1    Description:  PQ-loop repeat family protein / transmembrane family protein. Identical to Mannose-P-dolichol utilization defect 1 protein homolog [Arabidopsis Thaliana] (GB:Q9LTI3); similar to PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana] (TAIR:AT4G07390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61397.1); contains InterPro domain Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); contains InterPro domain Cystinosin/ERS1p repeat (InterPro:IPR006603) Range:  from: 23995837    to: 23996640    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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