Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->TOE2(3)        <---------ICU4        --------->ATHB12        <--------HAHB4       <---------YAB1       --------->ICU4                                    --------->At4g35610     --------->YAB1                                 <---------ANAC58 ----->ZmHOX2a(1)                                   <---------ANAC58                             ==== --->ZmHOX2a(2)                                   <-----------GT1  <-----------GT1               ---- ---->ARR11(3)                                    <---------AHL20(2)                          ------- --WOX13(1)                            <---------ATHB12  <---------At4g35610  --------->ZAT6<--------   tcctgcatcatcattaacaaaacaaaatccaattcataccaataactcaaatttacttgagcttaaaattcacaaattgaacagtagagaacagcttgat  23977700                 ------>ZmHOX2a(1)      -------->ATHB1      --------->AHL20(2)      --------->ATHB51     <---------ATHB51     <---------ATHB12     --------->ICU4   --------->WOX13(1) =======================HOX2a_HOX2a               --------->TOE2(3) <------ZmHOX2a(2)                <------ZmHOX2a(2)        --------->ARR14(2) =======================HOX2a_HOX2a             <-------TEIL      --------->AtLEC2     ---------->DOF2 -->ZmHOX2a(2)   ========================HOX2a_HOX2a      <---------CCA1(2)    ---------->DOF2 -->ATHB12      --------->TOE2(3)--------->ARR11(3)  --------->WOX13(1)   --------->DAG2 --DOF2   <---------ICU4         <---------ARR11(3)  --------->YAB1      ---------->DOF2          ---   cggatcaattattcatttccttactgattcagtaagatcgactacgacgattcattaatcaaatctccatgtaaaaaaagtcaaagactcaaagagattg  23977800                                 <---------ANAC58          <XXXXXXXXXXXXXXXXXXXXMIR417                            <---------ANAC58            ------>ZmHOX2a(2)             --------->TGA1a                            <---------ANAC58  <---------HSFC1(2)                      <---------O2                        <---------ZAT14       --------->HSFC1(2)                      <---------TGA1a            <------ZmHOX2a(1)    <---------ANAC58 <---------LBD16                     --------->O2 ------>LBD16          --------->ALFIN1       <---------HSFB2a(1)                <----------ID1   ccgaaaactagggaggaagaagagagtgttgagtaccttgtcccaagaagcatcgggatcgaacaatttcgctaatttcgatggagacaagtgagcattc  23977900                                                                                                    -                                                                                                    -                            <---------At4g35610                                                     <                            --------->At4g35610                                                    <-                            --------->ZAT2                                                 <---------LBD16                            <---------ZAT2                                                --------->CCA1(2)                   <---------At4g35610                     <----------DOF2               --------->ARR14(2)                   --------->At4g35610                 ------>ZmHOX2a(1)                 --------->ARR11(1)               <---------REM1(1)           <---------GLK1(2)                             <---------ARR14(2)   tggtgattctcttgttgttgtagctgattcagcttggctgatttcgattctttcatcctcgctttcaaacaaaaaacaaaacaaaactttggatacggag  23978000                                                                                --------->ZAT18                                                                           <---------WOX13(1)   <----                                                                         --------->ATHB12       <----                                                                       <---------MYB52(1)       <----                                                                      --------->At5g28300       <---- -------->ARR14(2)                                                   <---------ZAT6       <---------ANAC46 -------->GLK1(2)            <----------DOF2    <---------TOE2(3)    ----------->GT1    <---------MYB46(3) ---------ARR14(2)    <---------GLK1(1)   <---------AHL20(2)  ======================================= --------GLK1(2)  >>>>>>>>>TBF1     <---------ANAC46          ---------->DOF2   <---------ZAT18 <----   agaatctgaaaccttgggaagaagaaaccccctttgtggagtattgaattagggttcttagatttaaagcactgttaattggtgaactagtggctgagtc  23978100      --------->ICU4      <---------YAB1    *TSS   <---------YAB1   --------->ICU4 -----ANAC46 -----ANAC58                                                                                     XXXX -----TGA1a                                                                <-----------GT1  --------- -----ANAC58          <---------ZAT14                                <----------DOF2      --------->AHL20(2) =====bZIP_DOF        --------->ZAT14                             --------->GLK1(2)       <---------AHL20(2) -----O2 <---------YAB1                                      ------>ZmHOX2a(2)     ----------->GT1   gtgagattattattaaactgtgagtgtagttcatgttctgtatcgaagtgattcggactgtgatcgagtttcttttttttcttcttggtaaattaaaaga  23978200                                        <---------AHL20(1)                                        --------->AHL20(1)                                        --------->ARR11(3)                                    <---------YAB1                                   --------->AHL20(2)                                   --------->AHL20(1)                                   <---------AHL20(2)                                  --------->YAB1                   --------->AHL20(1)   <---------ARR11(3)               --------->At4g35610       --                   <---------AHL20(1)   <---------AHL20(2)              ----------->HVH21       -----                   <---------AHL20(2)   --------->AHL20(2)             ------>ZmHOX2a(2)        <----                   --------->AHL20(2)--------->AHL20(2)               <---------At4g35610      <-----            >>>>>>>ZML2      <---------MYB52(1)                      <---------AGP1            ------            <---------HSFB2a(2)   <---------ICU4                     --------->ARR14(2)       -------     <---------MYB52(1)<---------ICU4--------->YAB1          <---------CCA1(1)               <------- XXXXXXXXXXXXXXXX>MIR852    --------->TOE2(3)                <---------RVE1(1)               <------- ->DOF2     --------->HSFB2a(2)  <---------YAB1       <----------DOF2<---------ARR14(2)      --------   taaatccattagttctagtaattaattatcccttaattataatatattgggattagcttttggatattttggatctgatgcctcaaaatactgcaattat  23978300 <---------ANAC58 <---------ANAC58 ----->TEIL ---->ANAC55(2)                                                --------->AHL20(2)                 <-- -----ANAC55(2)                                                <---------AHL20(2)                 <-- ----------AtSPL8                                         <---------AHL20(2)                      <-- --------->AtSPL8                                         <---------AHL20(1)                     <<<< -->YAB1                                                  --------->ARR11(3)                     <<<< --ATHB12                                                 --------->AHL20(1)                     <<<< --ATHB51   ----------->GT1         <---------TOE2(3)     <---------ARR11(3)                <-------- ->ICU4--------->AHL20(2) <-----------GT1                 --------->AHL20(2)   <-----------GT1   ----   gtaccttgtttatatagtgaaacaaaattatctatactgatgttttgtttttgtctgcaatatattaaaaaaaaaaactattttcgagttctgactttgg  23978400                                                                              --------->AHL20(2)                                                                              <---------AHL20(2)                                                                            --------->TOE2(3)                                                                            --------->YAB1                                                                          <---------YAB1         --------------->AGL15                                            <---------TOE2(3)         <---------------AGL15           <-----------HVH21               --------->AHL20(2)         ============================================================================MADS_MADS -------WRKY45                         --------->MYB59                   --------->YAB1 -------WRKY38(1)                   --------->ARR14(2)                   <---------AHL20(2) -------WRKY12                  ------>ZmHOX2a(1)                    --------------->AGL15 <<<<<<WRKY18       --------------->AtSPL3                     <-----------RAV1(1)  <---------TOE2(3) <<<<<<WRKY62       <---------------AtSPL8                    <---------TOE1(3)   <---------AHL20(2) <<<<<<WRKY40       --------------->AtSPL8<---------MYB52(1)  <---------TOE2(3)   --------->AHL20(2) --DOF2  <----------DOF2       --------->TOE2(3)      <----------DOF2<---------------AGL15 ----->WRKY18(1)   ---------->DOF2  <---------ARR14(2)--------->TOE2(3)<---------YAB1   tcaaagtttgacttttatttgtaaagtactcttcctcaaattcggtcagtttaaaactttagttaatgttgctattaatattaattaatgtagtcatata  23978500                                     --------->AHL20(2)                                   <---------YAB1                                           ---------                                <---------AHL20(2)                                     --------->AHL20(2)                                <---------YAB1                                         <---------AHL20(2)                                --------->AHL20(2)                                     <---------AHL20(1)                             --------->AHL20(1)                                    --------->AHL20(2)                       <---------ICU4<---------AHL20(2)                            <---------AHL20(2)                      --------->ICU4--------->AHL20(2)                            --------->AHL20(2)               <---------YAB1<---------AHL20(1)                                   <---------AHL20(2)        --------->MYB52(1)<---------AHL20(2)                                 --------->At5g28300      <---------MYB52(2)  --------->AHL20(2)    --------->YAB1              ----------->GT1 <--------   gtttttaaactaacaatatgagtaatatttatatattattaaaaaaacaatattagtaatagcctaatatttgtcatactgtaatttaaaaaatttatat  23978600  Previous    Next  AGI:  At5g59410.1    Description:  similar to Rab5-interacting family protein [Arabidopsis thaliana] (TAIR:AT2G29020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21636.1); contains InterPro domain Rab5-interacting (InterPro:IPR010742) Range:  from: 23976799    to: 23978104    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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